BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_10_C14.seq
(649 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS011CF11F.B mgns011cF11f.b LENGTH:393bp ; DIRECTION:0 ; CLONE... 28 0.96
MGNS008BA05F.B mgns008bA05f.b LENGTH:431bp ; DIRECTION:0 ; CLONE... 28 0.96
MGNS013DA09F.B mgns013dA09f.b LENGTH:446bp ; DIRECTION:0 ; CLONE... 26 3.8
MGNS012CG08F.B mgns012cG08f.b LENGTH:372bp ; DIRECTION:0 ; CLONE... 26 3.8
MGNS012AF09F.B mgns012aF09f.b LENGTH:429bp ; DIRECTION:0 ; CLONE... 26 3.8
MGNS011BB12F.B mgns011bB12f.b LENGTH:355bp ; DIRECTION:0 ; CLONE... 26 3.8
MGNS010BA07F.B mgns010bA07f.b LENGTH:491bp ; DIRECTION:0 ; CLONE... 26 3.8
MGNS009AG01F.B mgns009aG01f.b LENGTH:403bp ; DIRECTION:0 ; CLONE... 26 3.8
MGNS007BB09F.B mgns007bB09f.b LENGTH:474bp ; DIRECTION:0 ; CLONE... 26 3.8
MGNS001AF09F.B mgns001aF09f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 26 3.8
CL63CT71CN74 cl63ct71cn74 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2... 26 3.8
CL215CT226CN232 cl215ct226cn232 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 3.8
>MGNS011CF11F.B mgns011cF11f.b LENGTH:393bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 393
Score = 28.2 bits (14), Expect = 0.96
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 ctgctggaatctct 164
||||||||||||||
Sbjct: 193 ctgctggaatctct 206
>MGNS008BA05F.B mgns008bA05f.b LENGTH:431bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 431
Score = 28.2 bits (14), Expect = 0.96
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 451 agggtggtctcaag 464
||||||||||||||
Sbjct: 129 agggtggtctcaag 142
>MGNS013DA09F.B mgns013dA09f.b LENGTH:446bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 446
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 356 cttctccatcgcc 368
|||||||||||||
Sbjct: 218 cttctccatcgcc 230
>MGNS012CG08F.B mgns012cG08f.b LENGTH:372bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 372
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 391 gtctccacctcga 403
|||||||||||||
Sbjct: 79 gtctccacctcga 67
>MGNS012AF09F.B mgns012aF09f.b LENGTH:429bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 429
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 406 gcttgagcatcgc 418
|||||||||||||
Sbjct: 283 gcttgagcatcgc 295
>MGNS011BB12F.B mgns011bB12f.b LENGTH:355bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 355
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 128 gaacatctccaag 140
|||||||||||||
Sbjct: 314 gaacatctccaag 302
>MGNS010BA07F.B mgns010bA07f.b LENGTH:491bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 491
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 524 cgacgccggcaag 536
|||||||||||||
Sbjct: 465 cgacgccggcaag 453
>MGNS009AG01F.B mgns009aG01f.b LENGTH:403bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 403
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 357 ttctccatcgcct 369
|||||||||||||
Sbjct: 161 ttctccatcgcct 173
>MGNS007BB09F.B mgns007bB09f.b LENGTH:474bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 474
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 215 cggccaccagatc 227
|||||||||||||
Sbjct: 242 cggccaccagatc 254
>MGNS001AF09F.B mgns001aF09f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 309 gcctggaaccgta 321
|||||||||||||
Sbjct: 378 gcctggaaccgta 366
>CL63CT71CN74 cl63ct71cn74 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001cA06f.b,mgns010
Length = 425
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 527 cgccggcaagggt 539
|||||||||||||
Sbjct: 302 cgccggcaagggt 314
>CL215CT226CN232 cl215ct226cn232 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007cG11f.b,mgns0
Length = 851
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 142 gtgctctggctgc 154
|||||||||||||
Sbjct: 344 gtgctctggctgc 332
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 181
Number of Sequences: 1206
Number of extensions: 181
Number of successful extensions: 46
Number of sequences better than 10.0: 12
length of query: 649
length of database: 496,015
effective HSP length: 14
effective length of query: 635
effective length of database: 479,131
effective search space: 304248185
effective search space used: 304248185
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)