The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_C15.seq Fgr_10_C15 LENGTH:278bp ; DIRECTION:5
; CLONE:Fgr_10_C15 ; CLONELIB: n/a ; TISSU
(278 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_043449.1| (NC_001694) minor capsid protein L2 [Human... 33 0.64
emb|CAA24302.1| (V01109) large T antigen [BK polyomavirus] 31 2.4
ref|NP_072073.1| (NC_001538) large T antigen [BK polyomavir... 31 2.4
gb|AAH16941.1|AAH16941 (BC016941) Unknown (protein for MGC:... 30 7.1
ref|NP_037349.1| (NM_013217) afadin [Rattus norvegicus] >gi... 30 7.1
pir||T42092 s-afadin - rat >gi|2555013|gb|AAC53391.1| (U832... 30 7.1
gb|AAC31979.1| (L39897) ORF1 [Pectobacterium chrysanthemi] 30 7.1
gb|AAF25206.1| (AF200187) EBNA2-like protein [cercopithicin... 30 7.1
ref|XP_102849.1| (XM_102849) hypothetical protein XP_102849... 29 9.2
pir||JC4238 HMG-box transcription factor - mouse 29 9.2
gb|AAF56853.1| (AE003768) CG11873 gene product [Drosophila ... 29 9.2
emb|CAB63130.1| (AL133468) hypothetical protein L3238.03 [L... 29 9.2
>ref|NP_043449.1| (NC_001694) minor capsid protein L2 [Human papillomavirus type 61]
sp|Q80953|VL2_HPV61 MINOR CAPSID PROTEIN L2
gb|AAA79497.1| (U31793) minor capsid protein L2 [Human papillomavirus type 61]
Length = 459
Score = 33.1 bits (74), Expect = 0.64
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 1/73 (1%)
Frame = -2
Query: 247 ASHNRRWLVVSRPPQRHADCSTQITFLTAPIELFL-TPDPSDPSLHGTGDFSLVPRPHPP 71
A H + L V P A ST++ +T P+ L TP S P + DF+ P P P
Sbjct: 357 AQHTQPTLTVQGPSLSAASASTKVHNVTVPLATGLDTPVTSGPDV----DFAHAPAPVPA 412
Query: 70 DPQ*NSQHPQNAW 32
P + HP + +
Sbjct: 413 VPYVPATHPHSIY 425
>emb|CAA24302.1| (V01109) large T antigen [BK polyomavirus]
Length = 694
Score = 31.2 bits (69), Expect = 2.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 205 QRHADCSTQITFLTAPIELFLTPDPSDPSLHGTGDFSLVPRPHPPDPQ 62
+ + CS+Q++ +AP E DP LH F RP P P+
Sbjct: 647 ESQSQCSSQVSDTSAPAEDSQRSDPHSQELHLCKGFQCFKRPKTPPPK 694
>ref|NP_072073.1| (NC_001538) large T antigen [BK polyomavirus]
sp|P03071|TALA_POVBK Large T antigen
pir||TVVPTB large T antigen - polyomavirus BK
emb|CAA24300.1| (V01108) large T antigen [BK polyomavirus]
Length = 695
Score = 31.2 bits (69), Expect = 2.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 205 QRHADCSTQITFLTAPIELFLTPDPSDPSLHGTGDFSLVPRPHPPDPQ 62
+ + CS+Q++ +AP E DP LH F RP P P+
Sbjct: 648 ESQSQCSSQVSDTSAPAEDSQRSDPHSQELHLCKGFQCFKRPKTPPPK 695
>gb|AAH16941.1|AAH16941 (BC016941) Unknown (protein for MGC:21452) [Homo sapiens]
Length = 389
Score = 29.6 bits (65), Expect = 7.1
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 91 PKRNRRCHEEKDQ---RGLESRKVLLELLRK*SACCNQHAAGEVWKQQASGD 237
PKR ++ E K + RGLE++ + +L+ + A +HA E ++ GD
Sbjct: 186 PKRRKKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAEEEANEEDVLGD 237
>ref|NP_037349.1| (NM_013217) afadin [Rattus norvegicus]
pir||T41751 l-afadin - rat
gb|AAC53390.1| (U83230) l-Afadin [Rattus norvegicus]
Length = 1829
Score = 29.6 bits (65), Expect = 7.1
Identities = 17/46 (36%), Positives = 21/46 (44%), Gaps = 1/46 (2%)
Frame = -2
Query: 169 LTAPIELFLTPDPSDPSLHGTGDFSLVPRPHP-PDPQ*NSQHPQNA 35
++ PI L P P P H T DF + P P P N PQ+A
Sbjct: 1363 VSQPIRTDLPPPPPPPPAHYTSDFDGISMDLPLPPPPANQAAPQSA 1408
>pir||T42092 s-afadin - rat
gb|AAC53391.1| (U83231) s-Afadin [Rattus norvegicus]
Length = 1663
Score = 29.6 bits (65), Expect = 7.1
Identities = 17/46 (36%), Positives = 21/46 (44%), Gaps = 1/46 (2%)
Frame = -2
Query: 169 LTAPIELFLTPDPSDPSLHGTGDFSLVPRPHP-PDPQ*NSQHPQNA 35
++ PI L P P P H T DF + P P P N PQ+A
Sbjct: 1356 VSQPIRTDLPPPPPPPPAHYTSDFDGISMDLPLPPPPANQAAPQSA 1401
>gb|AAC31979.1| (L39897) ORF1 [Pectobacterium chrysanthemi]
Length = 132
Score = 29.6 bits (65), Expect = 7.1
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = -2
Query: 208 PQRHADCSTQITFLTAPIELFLTPDPSDPSLHGTGDFSLVPR--PHPP 71
P H D T I L IE D S LH G+F +P PH P
Sbjct: 52 PHYHVDYETAIYLLKGRIETRYGTDLSQTCLHLAGEFLYIPPGVPHQP 99
>gb|AAF25206.1| (AF200187) EBNA2-like protein [cercopithicine herpesvirus 15]
gb|AAK95414.1| (AY037858) EBNA-2 [cercopithicine herpesvirus 15]
Length = 605
Score = 29.6 bits (65), Expect = 7.1
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = -2
Query: 244 SHNRRWLVVSRPPQRH----ADCSTQITFLTAPIELFLTPDPSDPSLHGTGDFSLVPRPH 77
+H R L+ + PQR ++ IT + TP PS P L P
Sbjct: 138 AHGVRGLLATLGPQRRNPTPPPMASPITLSPGSENVSPTPPPSTPPRAAPSYLQLPQEPQ 197
Query: 76 PPDPQ*NSQHPQNAW 32
+P ++ HPQ W
Sbjct: 198 TLNPGNHTAHPQTPW 212
>ref|XP_102849.1| (XM_102849) hypothetical protein XP_102849 [Homo sapiens]
Length = 917
Score = 29.3 bits (64), Expect = 9.2
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -2
Query: 142 TPDPSDPSLHGTGDFSLVPRPHPPDPQ*NSQHPQ 41
TP P DP L T P P PQ N QHPQ
Sbjct: 812 TPPPGDPPLQET------PPPRRLPPQENPQHPQ 839
>pir||JC4238 HMG-box transcription factor - mouse
Length = 378
Score = 29.3 bits (64), Expect = 9.2
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 259 GGRLASHNRRWLVVS--RPPQRHADCSTQITFLT-APIELFLTPDPSDPSLHGT 107
G R ++ R W+ S R RH+ ST + T P L+P P PSL GT
Sbjct: 250 GTRASATGRPWVKRSGQRRLPRHSQVSTMAPWATPGPFPNPLSPPPESPSLEGT 303
>gb|AAF56853.1| (AE003768) CG11873 gene product [Drosophila melanogaster]
Length = 2977
Score = 29.3 bits (64), Expect = 9.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 142 TPDPSDPSLHGTGDFSLVPRPHPPDPQ*NSQHPQN 38
TP+ P+ +GTG FSL+P+P Q Q Q+
Sbjct: 1857 TPEGMLPTANGTGGFSLMPQPVQQQQQQQQQQLQS 1891
>emb|CAB63130.1| (AL133468) hypothetical protein L3238.03 [Leishmania major]
Length = 96
Score = 29.3 bits (64), Expect = 9.2
Identities = 17/46 (36%), Positives = 26/46 (55%)
Frame = -2
Query: 253 RLASHNRRWLVVSRPPQRHADCSTQITFLTAPIELFLTPDPSDPSL 116
+L +H + +S+P RH +C T+ + P+ FL D SDPSL
Sbjct: 35 KLIAHASQVNHLSKP--RHRNCLTEFIIVETPVVSFLV-DSSDPSL 77
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,518,475
Number of Sequences: 907641
Number of extensions: 2965843
Number of successful extensions: 8598
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8578
length of database: 284,333,007
effective HSP length: 68
effective length of database: 222,613,419
effective search space used: 5342722056
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)