The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_C16.seq Fgr_10_C16 LENGTH:623bp ; DIRECTION:5
; CLONE:Fgr_10_C16 ; CLONELIB: n/a ; TISSU
(623 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_596227.1| (NC_003423) l4p-like ribosomal protein; mi... 109 2e-23
ref|NP_488254.1| (NC_003272) 50S ribosomal protein L4 [Nost... 91 1e-17
ref|NP_229299.1| (NC_000853) ribosomal protein L4 [Thermoto... 89 2e-17
pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 89 2e-17
ref|NP_602460.1| (NC_003454) LSU ribosomal protein L1E [Fus... 89 3e-17
ref|NP_013687.1| (NC_001145) Protein required for cell viab... 88 7e-17
sp|O24690|RL4_SYNP6 50S ribosomal protein L4 >gi|2446891|db... 87 9e-17
sp|P28601|RL4_BACST 50S RIBOSOMAL PROTEIN L4 >gi|421474|pir... 87 2e-16
ref|NP_440668.1| (NC_000911) 50S ribosomal protein L4 [Syne... 86 3e-16
ref|NP_218629.1| (NC_000919) ribosomal protein L4 (rplD) [T... 85 4e-16
pir||S40189 ribosomal protein L4 - Thermotoga maritima >gi|... 85 6e-16
ref|NP_053923.1| (NC_000925) 50S ribosomal protein L4 [Porp... 82 3e-15
ref|NP_212613.1| (NC_001318) ribosomal protein L4 (rplD) [B... 82 4e-15
gb|AAG27265.1| (AF114845) L4 ribosomal protein [Brachyspira... 82 4e-15
ref|NP_241001.1| (NC_002570) 50S ribosomal protein L4; ribo... 82 4e-15
emb|CAC21224.1| (AJ224857) ribosomal protein L4 [Thermus th... 81 6e-15
gb|AAB36823.1| (U78193) ribosomal protein L4 [Borrelia burg... 80 1e-14
sp|P49665|RL4_THETH 50S ribosomal protein L4 >gi|1033073|gb... 79 3e-14
ref|NP_403861.1| (NC_003143) 50S ribosomal protein L4 [Yers... 78 7e-14
ref|NP_289880.1| (NC_002655) 50S ribosomal subunit protein ... 77 9e-14
ref|NP_240330.1| (NC_002528) 50S ribosomal protein L4 [Buch... 77 2e-13
sp|P49226|RL4_MORMO 50S RIBOSOMAL PROTEIN L4 >gi|1037107|gb... 76 2e-13
ref|NP_438937.1| (NC_000907) ribosomal protein L4 (rpL4) [H... 76 2e-13
ref|NP_232223.1| (NC_002505) ribosomal protein L4 [Vibrio c... 76 3e-13
ref|NP_387998.1| (NC_000964) ribosomal protein L4 [Bacillus... 76 3e-13
sp|P10135|RL4_MYCCA 50S RIBOSOMAL PROTEIN L4 >gi|71094|pir|... 75 3e-13
ref|NP_212990.1| (NC_000918) ribosomal protein L04 [Aquifex... 75 3e-13
ref|NP_252952.1| (NC_002516) 50S ribosomal protein L4 [Pseu... 75 5e-13
pir||T09171 ribosomal protein L4 - spinach >gi|2792020|emb|... 75 5e-13
sp|O49937|RK4_SPIOL 50S RIBOSOMAL PROTEIN L4, CHLOROPLAST P... 75 5e-13
ref|NP_246353.1| (NC_002663) RpL4 [Pasteurella multocida] >... 75 6e-13
sp|Q9ZI49|RL4_AQUPY 50S RIBOSOMAL PROTEIN L4 >gi|4165866|gb... 75 6e-13
ref|NP_215216.1| (NC_000962) rplD [Mycobacterium tuberculos... 74 8e-13
sp|O06045|RL4_MYCBO 50S RIBOSOMAL PROTEIN L4 >gi|2113867|em... 74 8e-13
gb|AAB41511.1| (U37797) ribosomal protein L4 [Haemophilus i... 74 1e-12
sp|P55836|RL4_ACTAC 50S RIBOSOMAL PROTEIN L4 >gi|1841323|db... 73 2e-12
ref|NP_043616.1| (NC_001713) 50S ribosomal protein L4 [Odon... 73 2e-12
sp|O80361|RK4_TOBAC 50S RIBOSOMAL PROTEIN L4, CHLOROPLAST P... 73 2e-12
gb|AAF79563.1|AC022464_21 (AC022464) F22G5.34 [Arabidopsis ... 72 3e-12
ref|NP_294035.1| (NC_001263) ribosomal protein L4 [Deinococ... 72 3e-12
sp|O50061|RK4_ARATH 50S RIBOSOMAL PROTEIN L4, CHLOROPLAST P... 72 3e-12
ref|NP_563786.1| (NM_100606) expressed protein [Arabidopsis... 72 3e-12
pdb|1KPJ|C Chain C, Crystal Structure Of The Large Ribosoma... 72 3e-12
ref|NP_472109.1| (NC_003212) ribosomal protein L4 [Listeria... 72 3e-12
ref|NP_050770.1| (NC_000926) ribosomal protein L4 [Guillard... 72 3e-12
ref|NP_268255.1| (NC_002662) 50S ribosomal protein L4 [Lact... 72 4e-12
ref|NP_372773.1| (NC_002758) 50S ribosomal protein L4 [Stap... 72 4e-12
ref|NP_302264.1| (NC_002677) 50S ribosomal protein L4 [Myco... 72 5e-12
ref|NP_268461.1| (NC_002737) 50S ribosomal protein L4 [Stre... 71 9e-12
ref|NP_385463.1| (NC_003047) PROBABLE 50S RIBOSOMAL PROTEIN... 70 1e-11
gb|AAD24390.1|AC006081_12 (AC006081) 50S ribosomal protein ... 70 1e-11
ref|NP_565463.1| (NM_127564) 50S ribosomal protein L4 [Arab... 70 1e-11
ref|NP_354922.1| (NC_003062) AGR_C_3553p [Agrobacterium tum... 70 2e-11
sp|O06114|RL4_MYCSM 50S RIBOSOMAL PROTEIN L4 >gi|2113890|em... 70 2e-11
ref|NP_599749.1| (NC_003450) COG0088:Ribosomal protein L4 [... 70 2e-11
ref|NP_078066.1| (NC_002162) ribosomal protein L4 [Ureaplas... 69 4e-11
emb|CAB82071.1| (AL161803) 50S ribosomal protein L4 [Strept... 68 6e-11
ref|NP_344750.1| (NC_003028) ribosomal protein L4 [Streptoc... 68 7e-11
ref|NP_045186.1| (NC_001840) unknown; 50S ribosomal protein... 67 9e-11
ref|NP_072815.1| (NC_000908) ribosomal protein L4 (rpL4) [M... 66 3e-10
gb|AAH00756.1|AAH00756 (BC000756) Similar to CGI-28 protein... 64 1e-09
gb|AAG02005.1| (AY007152) similar to Homo sapiens CGI-28 pr... 64 1e-09
ref|XP_049502.1| (XM_049502) mitochondrial ribosomal protei... 64 1e-09
ref|NP_563320.1| (NC_003366) 50S ribosomal protein L4 [Clos... 64 1e-09
ref|NP_349731.1| (NC_003030) Ribosomal protein L4 [Clostrid... 63 2e-09
ref|NP_224842.1| (NC_000922) L4 Ribosomal Protein [Chlamydo... 62 3e-09
ref|NP_273201.1| (NC_003112) 50S ribosomal protein L4 [Neis... 62 3e-09
ref|NP_297187.1| (NC_002620) ribosomal protein L4 [Chlamydi... 62 3e-09
ref|NP_220042.1| (NC_000117) L4 Ribosomal Protein [Chlamydi... 62 4e-09
sp|Q9XD35|RL4_LEPIN 50S RIBOSOMAL PROTEIN L4 >gi|5163205|gb... 62 5e-09
ref|NP_539675.1| (NC_003317) LSU ribosomal protein L1E (= L... 61 7e-09
ref|NP_521139.1| (NC_003295) PROBABLE 50S RIBOSOMAL PROTEIN... 60 1e-08
ref|NP_109854.1| (NC_000912) ribosomal protein L4 [Mycoplas... 60 2e-08
dbj|BAB22118.1| (AK002464) data source:MGD, source key:MGI:... 60 2e-08
ref|NP_326418.1| (NC_002771) 50S RIBOSOMAL PROTEIN L4 [Myco... 59 3e-08
ref|NP_298443.1| (NC_002488) 50S ribosomal protein L4 [Xyle... 59 3e-08
sp|O52333|RL4_MYCGA 50S RIBOSOMAL PROTEIN L4 >gi|2766504|gb... 58 6e-08
ref|NP_360642.1| (NC_003103) 50S ribosomal protein L4 [Rick... 56 3e-07
ref|NP_524939.1| (NM_080200) mitochondrial ribosomal protei... 56 3e-07
ref|NP_102121.1| (NC_002678) 50S ribosomal protein L4 [Meso... 56 3e-07
ref|NP_420062.1| (NC_002696) ribosomal protein L4 [Caulobac... 54 8e-07
ref|NP_221022.1| (NC_000963) 50S RIBOSOMAL PROTEIN L4 (rplD... 54 1e-06
gb|AAF34602.1| (AF211983) Irb4 [Vibrio cholerae] 54 1e-06
ref|NP_223956.1| (NC_000921) 50S RIBOSOMAL PROTEIN L4 [Heli... 52 4e-06
ref|NP_208110.1| (NC_000915) ribosomal protein L4 (rpl4) [H... 52 5e-06
gb|AAK18638.1|AF250389_4 (AF250389) ribosomal protein L4 [C... 47 1e-04
ref|NP_075656.1| (NM_023167) RIKEN cDNA 1110017G11; RIKEN c... 47 1e-04
ref|NP_282832.1| (NC_002163) 50S ribosomal protein L4 [Camp... 47 1e-04
gb|AAK18646.1|AF250390_4 (AF250390) ribosomal protein L4 [C... 45 7e-04
gb|AAK17083.1|AF274444_13 (AF274444) ribosomal protein L4 [... 44 9e-04
ref|NP_044546.1| (NC_001799) ribosomal protein L4 [Toxoplas... 42 0.006
pir||S72287 ribosomal protein L4 - Plasmodium falciparum pl... 40 0.012
ref|NP_505181.1| (NM_072780) ribosomal protein [Caenorhabdi... 37 0.10
ref|NP_563661.1| (NM_100150) expressed protein [Arabidopsis... 36 0.31
ref|XP_087837.1| (XM_087837) hypothetical protein XP_087837... 34 0.89
ref|NP_070040.1| (NC_000917) conserved hypothetical protein... 33 1.5
ref|NP_594636.1| (NC_003424) weak similarity to tubulin-tyr... 33 2.6
gb|AAG09785.1|AF249884_1 (AF249884) hydrophobic ligand bind... 33 2.6
ref|NP_491301.1| (NM_058900) E01A2.4.p [Caenorhabditis eleg... 33 2.6
ref|NP_033412.1| (NM_009386) tight junction protein 1 [Mus ... 33 2.6
gb|AAF54870.1| (AE003697) CG10909 gene product [Drosophila ... 32 3.4
gb|AAK84779.1| (AF234650) gamma-gliadin [Triticum aestivum] 32 4.4
sp|P08453|GDB2_WHEAT GAMMA-GLIADIN PRECURSOR >gi|82595|pir|... 32 4.4
gb|AAF42989.1| (AF175312) gamma-gliadin [Triticum aestivum] 32 4.4
sp|Q9M4G4|PGMU_SOLTU Phosphoglucomutase, cytoplasmic (Gluco... 32 4.4
gb|AAG17134.1|AF190463_7 (AF190463) 2-hydroxymuconic semial... 32 4.4
dbj|BAB78701.1| (AB055503) cytosolic phosphoglucomutase [Ni... 32 5.8
sp|P03291|Y215_ADE02 HYPOTHETICAL PROTEIN F-215 >gi|76760|p... 32 5.8
gb|AAF79854.1|AC000348_7 (AC000348) T7N9.11 [Arabidopsis th... 31 7.5
ref|NP_174025.1| (NM_102467) unknown protein [Arabidopsis t... 31 7.5
dbj|BAA84802.1| (AP000559) hypothetical protein [Oryza sati... 31 7.5
gb|AAL77111.1|AF474373_8 (AF474373) hypothetical protein [H... 31 9.8
ref|XP_091415.1| (XM_091415) hypothetical protein XP_091415... 31 9.8
>ref|NP_596227.1| (NC_003423) l4p-like ribosomal protein; mitochodrial
[Schizosaccharomyces pombe]
pir||T40111 l4p-like ribosomal protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAA21166.1| (AL031788) l4p-like ribosomal protein; mitochodrial
[Schizosaccharomyces pombe]
Length = 261
Score = 109 bits (273), Expect = 2e-23
Identities = 69/192 (35%), Positives = 98/192 (50%), Gaps = 8/192 (4%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
AV+YE DN RQGTAS+K R ++ S RK+ QKGTG AR+G SPI RGG K+ GP PR
Sbjct: 41 AVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDASSPIRRGGAKSHGPKPR 100
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYL 429
DF T L +VY+ A R ALS R+ +L + E+ ++L P
Sbjct: 101 DFSTKLQTQVYNLAMRIALSTRFINNELTILENPINLSQPK------------------- 141
Query: 430 KRYMTGVMSNLGLGRAAGRTLFVTGD--------RREALFDAMEQIPWDGRALGIEDVDV 585
R + V+ LG G+ LFV D + L A Q+ + + + + V
Sbjct: 142 TRILLEVLKQHKLGHEYGKALFVLNDNYFEDESLKNNNLLLASRQLGYHCSFIPVGEFQV 201
Query: 586 KDLLETGKVVLE 621
+D L+ GK+ ++
Sbjct: 202 RDALKFGKLFID 213
>ref|NP_488254.1| (NC_003272) 50S ribosomal protein L4 [Nostoc sp. PCC 7120]
dbj|BAB75913.1| (AP003595) 50S ribosomal protein L4 [Nostoc sp. PCC 7120]
Length = 210
Score = 90.5 bits (223), Expect = 1e-17
Identities = 55/108 (50%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+V + N RQGTASTKTR +V G RK QKGTGRAR G+ +SP+ RGGG FGP PR
Sbjct: 36 ALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPR 95
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCED-GMDLVLPTDYEMVA 390
DF +NRK A RTA + R DLI+ E+ +L P ++VA
Sbjct: 96 DFDLKMNRKERRLALRTA--FVSRIDDLILVEEFSNELSRPKTKDLVA 141
>ref|NP_229299.1| (NC_000853) ribosomal protein L4 [Thermotoga maritima]
sp|P38516|RL4_THEMA 50S ribosomal protein L4
pir||C72250 ribosomal protein L4 - Thermotoga maritima (strain MSB8)
gb|AAD36565.1|AE001798_30 (AE001798) ribosomal protein L4 [Thermotoga maritima]
Length = 235
Score = 89.4 bits (220), Expect = 2e-17
Identities = 47/86 (54%), Positives = 58/86 (66%)
Frame = +1
Query: 91 NTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLN 270
N R GTASTKTR +V G RK PQK TGRAR G+ +SPI R GG GP PRD+ LN
Sbjct: 43 NRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLN 102
Query: 271 RKVYDKAWRTALSYRYRQGDLIVCED 348
+K+ A R+ALS +YR+ L+V +D
Sbjct: 103 KKMKKLALRSALSVKYRENKLLVLDD 128
>pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4
Length = 225
Score = 89.4 bits (220), Expect = 2e-17
Identities = 47/86 (54%), Positives = 58/86 (66%)
Frame = +1
Query: 91 NTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLN 270
N R GTASTKTR +V G RK PQK TGRAR G+ +SPI R GG GP PRD+ LN
Sbjct: 42 NRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLN 101
Query: 271 RKVYDKAWRTALSYRYRQGDLIVCED 348
+K+ A R+ALS +YR+ L+V +D
Sbjct: 102 KKMKKLALRSALSVKYRENKLLVLDD 127
>ref|NP_602460.1| (NC_003454) LSU ribosomal protein L1E [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL93759.1| (AE010470) LSU ribosomal protein L1E [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 209
Score = 89.0 bits (219), Expect = 3e-17
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGTASTKTR V G RK QKGTGRAR GT ++P + GGG TFGPHPR + +N+K
Sbjct: 45 RQGTASTKTRAMVRGGGRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKK 104
Query: 277 VYDKAWRTALSYRYRQGDLIVCE-DGMD 357
V + A R+ALS + G+++V + DG++
Sbjct: 105 VRNLALRSALSAKVAAGNVLVLDYDGIE 132
>ref|NP_013687.1| (NC_001145) Protein required for cell viability; Yml025cp
[Saccharomyces cerevisiae]
sp|P51998|RL4P_YEAST PUTATIVE L4P LIKE RIBOSOMAL PROTEIN
pir||S50887 ribosomal protein L4 precursor, mitochondrial - yeast
(Saccharomyces cerevisiae)
emb|CAA86630.1| (Z46659) putative spliced orf, len: 286, CAI: 0.16, similar to
ribosomal proteins [Saccharomyces cerevisiae]
Length = 286
Score = 87.8 bits (216), Expect = 7e-17
Identities = 63/197 (31%), Positives = 94/197 (46%), Gaps = 13/197 (6%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFG-PHP 246
AVVYE DN R G ++ R + S RK+ PQKG+GRAR+G SP GG+ P
Sbjct: 77 AVVYENDNRRVGASNPPGRSENGFSRRKLMPQKGSGRARVGDANSPTRHNGGRALARTAP 136
Query: 247 RDFGTHLNRKVYDKAWRTALSYRYRQGDL-IVCEDGMDLVLPT-----------DYEMVA 390
D+ T L KVY A+ ALS++Y+ G L ++ + +DL+ PT + V
Sbjct: 137 NDYTTELPSKVYSMAFNNALSHQYKSGKLFVIGGEKVDLISPTPELDLNRLDLVNTNTVE 196
Query: 391 GKYLKDGLKEAYLKRYMTGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGI 570
GK + +G E ++++ R LF+T RE L + + +
Sbjct: 197 GKEIFEG--EVIFRKFLEEFQLK------GKRLLFITDKTREGLIKSSDPYKQKVDVIQK 248
Query: 571 EDVDVKDLLETGKVVLE 621
E V+V D+L V +E
Sbjct: 249 ELVEVNDILRAQAVFIE 265
>sp|O24690|RL4_SYNP6 50S ribosomal protein L4
dbj|BAA22450.1| (AB000111) 50S ribosomal protein L4 [Synechococcus sp.]
Length = 210
Score = 87.4 bits (215), Expect = 9e-17
Identities = 59/182 (32%), Positives = 93/182 (50%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A++ + N RQGT ++KTR +V G RK QKGTGRAR G+ +SP+ RGGG FGP PR
Sbjct: 36 ALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPR 95
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYL 429
D+ +NRK A RTAL R DL+V ++ D + VA + G++
Sbjct: 96 DYSVKMNRKERRLALRTALI--SRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGV- 152
Query: 430 KRYMTGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGK 609
+ L +T DR + + ++ +P + + + ++++ DLL +
Sbjct: 153 ------------------KVLLITADRDQNVELSVRNLP-NVKLITATNLNIFDLLNADR 193
Query: 610 VV 615
+V
Sbjct: 194 IV 195
>sp|P28601|RL4_BACST 50S RIBOSOMAL PROTEIN L4
pir||S24364 ribosomal protein L4 - Bacillus stearothermophilus
emb|CAA47403.1| (X67014) ribosomal protein L4 [Geobacillus stearothermophilus]
Length = 207
Score = 86.7 bits (213), Expect = 2e-16
Identities = 62/183 (33%), Positives = 93/183 (49%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
AV+ + + RQGT TK R +V G RK QKGTGRAR G+ ++P RGGG FGP PR
Sbjct: 36 AVIMQRASMRQGTHKTKNRAEVSGGGRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPR 95
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYL 429
+ L +KV A ++ALS + + D++V D + L P EMV
Sbjct: 96 SYSYKLPKKVRRLAIKSALSSKVLENDIVVL-DQLSLEAPKTKEMVK------------- 141
Query: 430 KRYMTGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGK 609
+++NL + R A L VT + E ++ + IP + + ++V D+L K
Sbjct: 142 ------ILNNLSVDRKA---LIVTDELNENVYLSARNIP-GVKVVPANGINVLDVLNHDK 191
Query: 610 VVL 618
+V+
Sbjct: 192 LVI 194
>ref|NP_440668.1| (NC_000911) 50S ribosomal protein L4 [Synechocystis sp. PCC 6803]
sp|P73319|RL4_SYNY3 50S ribosomal protein L4
pir||S77501 ribosomal protein L4 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17348.1| (D90905) 50S ribosomal protein L4 [Synechocystis sp. PCC 6803]
Length = 210
Score = 85.5 bits (210), Expect = 3e-16
Identities = 44/82 (53%), Positives = 55/82 (66%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+V + +N RQG AS KTR +V G RK QKGTGRAR G+ +SP+ RGGG FGP PR
Sbjct: 36 ALVRQQNNARQGNASAKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPR 95
Query: 250 DFGTHLNRKVYDKAWRTALSYR 315
D+ +NRK A RTA++ R
Sbjct: 96 DYSQKMNRKERRLALRTAIASR 117
>ref|NP_218629.1| (NC_000919) ribosomal protein L4 (rplD) [Treponema pallidum]
sp|O83220|RL4_TREPA 50S ribosomal protein L4
pir||H71354 probable ribosomal protein L4 (rplD) - syphilis spirochete
gb|AAC65175.1| (AE001202) ribosomal protein L4 (rplD) [Treponema pallidum]
Length = 216
Score = 85.1 bits (209), Expect = 4e-16
Identities = 48/93 (51%), Positives = 58/93 (61%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+ E N R GTA TK R +VHGS+ K QKGTGRAR G K+SP+L GGG FGP PR
Sbjct: 35 AINSELSNKRLGTACTKGRSEVHGSNTKPYKQKGTGRARRGDKKSPLLVGGGTIFGPKPR 94
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCED 348
DF L +KV A ++ LS + + L V ED
Sbjct: 95 DFHYALPKKVKRLAMKSLLSLKAQGDALTVIED 127
>pir||S40189 ribosomal protein L4 - Thermotoga maritima
emb|CAA79778.1| (Z21677) ribosomal protein L4 [Thermotoga maritima]
Length = 235
Score = 84.7 bits (208), Expect = 6e-16
Identities = 45/85 (52%), Positives = 56/85 (64%)
Frame = +1
Query: 91 NTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLN 270
N R GTASTKTR +V G RK PQK TGRA G+ +SPI R GG GP PRD+ LN
Sbjct: 43 NRRAGTASTKTRGEVSGGGRKPWPQKHTGRASHGSIRSPIWRHGGVVHGPKPRDWSKKLN 102
Query: 271 RKVYDKAWRTALSYRYRQGDLIVCE 345
+K+ A R+ALS +YR+ L+V +
Sbjct: 103 KKMKKLALRSALSVKYRENKLLVLD 127
>ref|NP_053923.1| (NC_000925) 50S ribosomal protein L4 [Porphyra purpurea]
sp|P51313|RK4_PORPU CHLOROPLAST 50S RIBOSOMAL PROTEIN L4
pir||S73234 ribosomal protein L4, chloroplast - red alga (Porphyra purpurea)
chloroplast
gb|AAC08199.1| (U38804) 50S ribosomal protein L4 [Porphyra purpurea]
Length = 214
Score = 82.4 bits (202), Expect = 3e-15
Identities = 42/80 (52%), Positives = 54/80 (67%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+V + + RQG+A+TKTR +V G RK QKGTGRAR G+ +SP+ RGGG FGP PR
Sbjct: 40 ALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPR 99
Query: 250 DFGTHLNRKVYDKAWRTALS 309
F +N+K A RTAL+
Sbjct: 100 SFAKKMNKKESQLALRTALN 119
>ref|NP_212613.1| (NC_001318) ribosomal protein L4 (rplD) [Borrelia burgdorferi]
sp|P94268|RL4_BORBU 50S RIBOSOMAL PROTEIN L4
pir||F70159 ribosomal protein L4 (rplD) - Lyme disease spirochete
gb|AAC66863.1| (AE001152) ribosomal protein L4 (rplD) [Borrelia burgdorferi]
Length = 209
Score = 82.0 bits (201), Expect = 4e-15
Identities = 42/82 (51%), Positives = 55/82 (66%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+ E N R GT+STKTR +V GS +K QKGTGRAR+GTK++P+ GGG GP PR
Sbjct: 35 AIKNELSNLRVGTSSTKTRSEVRGSSKKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPR 94
Query: 250 DFGTHLNRKVYDKAWRTALSYR 315
D+ L +KV A+++ LS R
Sbjct: 95 DYSYRLPKKVKKLAFKSVLSLR 116
>gb|AAG27265.1| (AF114845) L4 ribosomal protein [Brachyspira pilosicoli]
Length = 215
Score = 82.0 bits (201), Expect = 4e-15
Identities = 47/93 (50%), Positives = 57/93 (60%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+ E N RQGT STKTR +V G +K QKGTGRAR G+ +SPI GGGKT P PR
Sbjct: 35 AIKNELANRRQGTHSTKTRAEVSGGGKKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPR 94
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCED 348
D+ L +K+ KA + LS +Y L V ED
Sbjct: 95 DYSYRLPKKMKRKALLSVLSLKYGNNVLKVFED 127
>ref|NP_241001.1| (NC_002570) 50S ribosomal protein L4; ribosomal protein L4
[Bacillus halodurans]
sp|Q9Z9L3|RL4_BACHD 50S RIBOSOMAL PROTEIN L4
pir||T44384 ribosomal protein L4 [imported] - Bacillus halodurans
dbj|BAA75272.1| (AB017508) rplD homologue (identity of 79% to B. subtilis )
[Bacillus halodurans]
dbj|BAB03854.1| (AP001507) 50S ribosomal protein L4 [Bacillus halodurans]
Length = 207
Score = 82.0 bits (201), Expect = 4e-15
Identities = 63/183 (34%), Positives = 92/183 (49%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
AVV + + RQGT TKTR +V G RK QKGTGRAR G+ +SP GGG FGP PR
Sbjct: 36 AVVMQQASLRQGTHKTKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPR 95
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYL 429
+ L +KV A ++ALS + + +++V E L L EA
Sbjct: 96 SYSYKLPKKVRRLAIKSALSSKVKAEEIVVLE---SLAL-----------------EAPK 135
Query: 430 KRYMTGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGK 609
+ M ++S L + R A L VT D + + + IP + E V+V D+++ K
Sbjct: 136 TKEMASILSGLSVDRKA---LVVTADYNDNVALSARNIP-GVTFVTAEGVNVLDVIKHDK 191
Query: 610 VVL 618
+++
Sbjct: 192 LII 194
>emb|CAC21224.1| (AJ224857) ribosomal protein L4 [Thermus thermophilus]
Length = 210
Score = 81.3 bits (199), Expect = 6e-15
Identities = 64/175 (36%), Positives = 89/175 (50%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
R+GTASTKTR +V S RK+ PQK TGRAR G +PI GGG FGP PRD+ L +K
Sbjct: 45 RRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKK 104
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLKRYMTGVMS 456
V K A++ R R+G L++ E AG +D A+ K
Sbjct: 105 VRKKGLAMAVADRAREGKLLL------------VEAFAGVERQDQAIPAWAK-------- 144
Query: 457 NLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKVVLE 621
GL + L VTG+ E + A +PW L E ++V D++ T ++V++
Sbjct: 145 EAGLD-GSESVLLVTGN--ELVRRAARNLPW-VVTLAPEGLNVYDIVRTERLVMD 195
>gb|AAB36823.1| (U78193) ribosomal protein L4 [Borrelia burgdorferi]
Length = 209
Score = 80.1 bits (196), Expect = 1e-14
Identities = 41/82 (50%), Positives = 54/82 (65%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+ E N R GT+STKTR +V GS +K KGTGRAR+GTK++P+ GGG GP PR
Sbjct: 35 AIKNELSNLRVGTSSTKTRSEVRGSSKKPWKHKGTGRARVGTKRNPVWIGGGIALGPKPR 94
Query: 250 DFGTHLNRKVYDKAWRTALSYR 315
D+ L +KV A+++ LS R
Sbjct: 95 DYSYRLPKKVKKLAFKSVLSLR 116
>sp|P49665|RL4_THETH 50S ribosomal protein L4
gb|AAA97862.1| (U36480) ribosomal protein L4 [Thermus thermophilus]
prf||2204237A ribosomal protein L4 [Thermus thermophilus]
Length = 210
Score = 79.0 bits (193), Expect = 3e-14
Identities = 66/178 (37%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
R+GTASTKTR +V S RK+ PQK TGRAR G +PI GGG FGP PRD+ L +K
Sbjct: 45 RRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKK 104
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGL---KEAYLKRYMTG 447
V K A++ R R+G L++ E + V GK K+ L KEA L
Sbjct: 105 VRKKGLAMAVADRAREGKLLLVE---------AFAGVNGK-TKEFLAWAKEAGLD----- 149
Query: 448 VMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKVVLE 621
+ L VTG+ E + A +PW L E ++V D++ T ++V++
Sbjct: 150 ---------GSESVLLVTGN--ELVRRAARNLPW-VVTLAPEGLNVYDIVRTERLVMD 195
>ref|NP_403861.1| (NC_003143) 50S ribosomal protein L4 [Yersinia pestis]
sp|P11253|RL4_YERPE 50S ribosomal protein L4
pir||R5EB4Y ribosomal protein L4 - Yersinia pseudotuberculosis
emb|CAA32543.1| (X14363) ribosomal protein L4 (AA 1 - 201) [Yersinia
pseudotuberculosis]
emb|CAC89070.1| (AJ414141) 50S ribosomal protein L4 [Yersinia pestis]
Length = 201
Score = 77.8 bits (190), Expect = 7e-14
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV RQGT + KTR +V GS +K QKGTGRAR G+ +SPI R GG TF P+D
Sbjct: 32 VVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQD 91
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLK 432
+N+K+Y A ++ LS RQ LI+ E E K L LK+ L+
Sbjct: 92 HSQKVNKKMYRGALKSILSELVRQDRLIIVE-------KFSVEAPKTKLLAQKLKDMALE 144
Query: 433 RYM--TGVM-SNLGLGRAAGRTLFVTGDRREALFDAMEQIPWD 552
+ TG + NL L A R L+ R A D + I +D
Sbjct: 145 DVLIVTGELDENLFL---AARNLYKVDVRDVAGIDPVSLIAFD 184
>ref|NP_289880.1| (NC_002655) 50S ribosomal subunit protein L4, regulates expression
of S10 operon [Escherichia coli O157:H7 EDL933]
ref|NP_312211.1| (NC_002695) 50S ribosomal subunit protein L4, regulates expression
of S10 operon [Escherichia coli O157:H7]
ref|NP_417778.1| (NC_000913) 50S ribosomal subunit protein L4, regulates expression
of S10 operon [Escherichia coli K12]
ref|NP_458461.1| (NC_003198) 50S ribosomal subunit protein L4 [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_462343.1| (NC_003197) 50S ribosomal subunit protein L4, regulates expression
of S10 operon [Salmonella typhimurium LT2]
sp|P02388|RL4_ECOLI 50S ribosomal protein L4
pir||R5EC4 ribosomal protein L4 [validated] - Escherichia coli
emb|CAA26461.1| (X02613) ribosomal protein L4 (rplD) (aa 1-201) [Escherichia coli]
gb|AAA58116.1| (U18997) 50S ribosomal subunit protein L4 [Escherichia coli]
gb|AAC76344.1| (AE000408) 50S ribosomal subunit protein L4, regulates expression
of S10 operon [Escherichia coli K12]
gb|AAG58440.1|AE005557_9 (AE005557) 50S ribosomal subunit protein L4, regulates expression
of S10 operon [Escherichia coli O157:H7 EDL933]
dbj|BAB37607.1| (AP002564) 50S ribosomal subunit protein L4, regulates expression
of S10 operon [Escherichia coli O157:H7]
gb|AAL22302.1| (AE008858) 50S ribosomal subunit protein L4, regulates expression
of S10 operon [Salmonella typhimurium LT2]
emb|CAD08174.1| (AL627281) 50S ribosomal subunit protein L4 [Salmonella enterica
subsp. enterica serovar Typhi]
prf||0701225A ribosomal protein L4 [Escherichia coli]
Length = 201
Score = 77.4 bits (189), Expect = 9e-14
Identities = 44/91 (48%), Positives = 55/91 (60%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV RQGT + KTR +V GS +K QKGTGRAR G+ +SPI R GG TF P+D
Sbjct: 32 VVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQD 91
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
+N+K+Y A ++ LS RQ LIV E
Sbjct: 92 HSQKVNKKMYRGALKSILSELVRQDRLIVVE 122
>ref|NP_240330.1| (NC_002528) 50S ribosomal protein L4 [Buchnera sp. APS]
sp|P57590|RL4_BUCAI 50S ribosomal protein L4
dbj|BAB13216.1| (AP001119) 50S ribosomal protein L4 [Buchnera sp. APS]
Length = 201
Score = 76.6 bits (187), Expect = 2e-13
Identities = 61/172 (35%), Positives = 86/172 (49%), Gaps = 3/172 (1%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
V+ +TRQGT + K+R +V GS RK QKGTGRAR G+ +SPI R GG TF P++
Sbjct: 32 VIAYSASTRQGTRAQKSRAEVSGSGRKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQE 91
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLK 432
+N+K+Y A ++ S RQ LIV E+ L P K L LK+ LK
Sbjct: 92 HSQKVNKKMYRGALKSIFSELIRQKRLIVFEN-FSLDAPKT------KLLVQKLKDINLK 144
Query: 433 RYM---TGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDV 579
+ + +NL L A R L+ + D + I +D + +E V
Sbjct: 145 NVLIVTNKIDNNLFL---ASRNLYSVDVKDVHSIDPVSLIAFDHVVITVEAV 193
>sp|P49226|RL4_MORMO 50S RIBOSOMAL PROTEIN L4
gb|AAB41513.1| (U37798) L4 [Morganella morganii]
Length = 200
Score = 76.3 bits (186), Expect = 2e-13
Identities = 43/91 (47%), Positives = 55/91 (60%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV RQGT + KTR +V GS +K QKGTGRAR G+ +SPI R GG TF P+D
Sbjct: 31 VVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGITFAAKPQD 90
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
+N+K+Y A ++ LS RQ LI+ E
Sbjct: 91 HSQKVNKKMYRGALKSILSELVRQDRLIIVE 121
>ref|NP_438937.1| (NC_000907) ribosomal protein L4 (rpL4) [Haemophilus influenzae Rd]
sp|P44345|RL4_HAEIN 50S ribosomal protein L4
pir||F64092 ribosomal protein L4 - Haemophilus influenzae (strain Rd KW20)
gb|AAC22437.1| (U32761) ribosomal protein L4 (rpL4) [Haemophilus influenzae Rd]
Length = 200
Score = 76.3 bits (186), Expect = 2e-13
Identities = 43/91 (47%), Positives = 54/91 (59%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV RQGT + KTR +V GS +K QKGTGRAR G +SPI R GG TF P+D
Sbjct: 31 VVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRARAGDIKSPIWRSGGTTFAAKPQD 90
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
+N+K+Y A ++ LS RQ L+V E
Sbjct: 91 HSQKVNKKMYRGAIKSILSELVRQDRLVVVE 121
>ref|NP_232223.1| (NC_002505) ribosomal protein L4 [Vibrio cholerae]
pir||E82059 ribosomal protein L4 VC2595 [imported] - Vibrio cholerae (group O1
strain N16961)
gb|AAF95736.1| (AE004326) ribosomal protein L4 [Vibrio cholerae]
Length = 200
Score = 75.9 bits (185), Expect = 3e-13
Identities = 44/92 (47%), Positives = 54/92 (57%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV RQGT + KTR +V G K QKGTGRAR GT +SPI R GG TF P+D
Sbjct: 31 VVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQD 90
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCED 348
+N+K+Y A ++ LS RQ LIV E+
Sbjct: 91 HSQKVNKKMYRGAMKSILSELVRQERLIVVEN 122
>ref|NP_387998.1| (NC_000964) ribosomal protein L4 [Bacillus subtilis]
sp|P42921|RL4_BACSU 50S ribosomal protein L4
pir||H69694 ribosomal protein L4 rplD - Bacillus subtilis
dbj|BAA08832.1| (D50302) Ribosomal Protein L4 [Bacillus subtilis]
gb|AAC45957.1| (U43929) L4 [Bacillus subtilis]
emb|CAB11893.1| (Z99104) ribosomal protein L4 [Bacillus subtilis]
Length = 207
Score = 75.9 bits (185), Expect = 3e-13
Identities = 55/159 (34%), Positives = 76/159 (47%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A++ + + RQGT K R +V G RK QKGTGRAR G+ +SP RGGG FGP PR
Sbjct: 36 AILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPR 95
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYL 429
+ L +KV A ++ LS + ++IV E DL L T
Sbjct: 96 SYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLE---DLTLDT-----------------AK 135
Query: 430 KRYMTGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIP 546
+ M ++ L + + A L VT D EA+ + IP
Sbjct: 136 TKEMAAILKGLSVEKKA---LIVTADANEAVALSARNIP 171
>sp|P10135|RL4_MYCCA 50S RIBOSOMAL PROTEIN L4
pir||R5YM4C ribosomal protein L4 - Mycoplasma capricolum
emb|CAA29705.1| (X06414) ribosomal protein L4 (AA 1-208) [Mycoplasma capricolum]
Length = 208
Score = 75.5 bits (184), Expect = 3e-13
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 1/175 (0%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR-DFGTHLNR 273
RQGT KTR +V G RK QKGTG AR G+ ++P +GG TFGP P ++ +N+
Sbjct: 44 RQGTKKVKTRAEVSGGGRKPWKQKGTGLARQGSIRAPQWKGGEVTFGPTPDINYKKSVNK 103
Query: 274 KVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLKRYMTGVM 453
KV A+R+ LS + ++ +L++ D D P+ EMV VM
Sbjct: 104 KVRALAFRSVLSLKVKENNLVIV-DKFDFAKPSTKEMVV-------------------VM 143
Query: 454 SNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKVVL 618
NL + +TL VT ++ E + + I + + ++V DLL K+++
Sbjct: 144 KNLKIDDQ--KTLIVTKEKEELVVKSSNNIT-GVKTISANQLNVFDLLNATKLLI 195
>ref|NP_212990.1| (NC_000918) ribosomal protein L04 [Aquifex aeolicus]
sp|O66432|RL4_AQUAE 50S ribosomal protein L4
pir||E70300 ribosomal protein L04 - Aquifex aeolicus
gb|AAC06394.1| (AE000669) ribosomal protein L04 [Aquifex aeolicus]
Length = 199
Score = 75.5 bits (184), Expect = 3e-13
Identities = 61/175 (34%), Positives = 89/175 (50%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT STKTR +V S RK+ PQKGTG AR G + I GGG GP PRD+ L ++
Sbjct: 34 RQGTHSTKTRGEVAYSGRKILPQKGTGNARHGERGVNIFVGGGVAHGPKPRDYEYPLPKR 93
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLKRYMTGVMS 456
V + ALS + R + I+ D +DL GK K +LK
Sbjct: 94 VRKLGLKMALSDKAR-NNAIIFVDNIDL----------GKKPKTKKAIEFLK-------- 134
Query: 457 NLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKVVLE 621
NLG+ + + L V ++ + L+ + +P + R L E ++V D+L K+V++
Sbjct: 135 NLGVEKE--KVLVVIPEKADVLYKSFRNLP-NVRVLLPEGLNVYDVLWANKLVIQ 186
>ref|NP_252952.1| (NC_002516) 50S ribosomal protein L4 [Pseudomonas aeruginosa]
pir||D83116 50S ribosomal protein L4 PA4262 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG07650.1|AE004841_28 (AE004841) 50S ribosomal protein L4 [Pseudomonas aeruginosa]
Length = 200
Score = 75.1 bits (183), Expect = 5e-13
Identities = 44/93 (47%), Positives = 54/93 (57%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
AVV RQG+ + KTR +V G +K QKGTGRAR GT +SPI RGGG TF PR
Sbjct: 30 AVVAYMAGGRQGSKAQKTRSEVSGGGKKPWRQKGTGRARAGTIRSPIWRGGGTTFAAKPR 89
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCED 348
LN+K+Y A R+ L+ R L+V D
Sbjct: 90 SHEQKLNKKMYRAALRSILAELVRLDRLVVVAD 122
>pir||T09171 ribosomal protein L4 - spinach
emb|CAA63651.1| (X93160) ribosomal protein L4 [Spinacia oleracea]
Length = 293
Score = 75.1 bits (183), Expect = 5e-13
Identities = 42/85 (49%), Positives = 53/85 (61%), Gaps = 5/85 (5%)
Frame = +1
Query: 70 AVVYEG-----DNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTF 234
AVV+ G N R+GTAST TR +V G RK PQK TGRAR G++ SP+ GGG F
Sbjct: 82 AVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIF 141
Query: 235 GPHPRDFGTHLNRKVYDKAWRTALS 309
GP PRD+ +N+K A TA++
Sbjct: 142 GPKPRDWTIKMNKKERRLALSTAIA 166
>sp|O49937|RK4_SPIOL 50S RIBOSOMAL PROTEIN L4, CHLOROPLAST PRECURSOR (R-PROTEIN L4)
pir||T09170 ribosomal protein L4, chloroplast - spinach
emb|CAA75149.1| (Y14932) chloroplast ribosomal protein L4 [Spinacia oleracea]
Length = 293
Score = 75.1 bits (183), Expect = 5e-13
Identities = 42/85 (49%), Positives = 53/85 (61%), Gaps = 5/85 (5%)
Frame = +1
Query: 70 AVVYEG-----DNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTF 234
AVV+ G N R+GTAST TR +V G RK PQK TGRAR G++ SP+ GGG F
Sbjct: 82 AVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIF 141
Query: 235 GPHPRDFGTHLNRKVYDKAWRTALS 309
GP PRD+ +N+K A TA++
Sbjct: 142 GPKPRDWTIKMNKKERRLALSTAIA 166
>ref|NP_246353.1| (NC_002663) RpL4 [Pasteurella multocida]
gb|AAK03498.1| (AE006177) RpL4 [Pasteurella multocida]
Length = 200
Score = 74.7 bits (182), Expect = 6e-13
Identities = 43/91 (47%), Positives = 54/91 (59%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV RQG+ + KTR +V GS +K QKGTGRAR G +SPI R GG TF P+D
Sbjct: 31 VVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQD 90
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
+N+K+Y A ++ LS RQ LIV E
Sbjct: 91 HSQKVNKKMYRGAIKSILSELVRQDRLIVVE 121
>sp|Q9ZI49|RL4_AQUPY 50S RIBOSOMAL PROTEIN L4
gb|AAD08786.1| (AF040100) ribosomal protein L4 [Aquifex pyrophilus]
Length = 199
Score = 74.7 bits (182), Expect = 6e-13
Identities = 62/174 (35%), Positives = 86/174 (48%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT STKTR +V S RK+ PQKGTG AR G + I GGG GP PRD+ L +K
Sbjct: 34 RQGTHSTKTRGEVAYSGRKILPQKGTGNARHGERGVNIFVGGGVAHGPKPRDYEYPLPKK 93
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLKRYMTGVMS 456
V + ALS + Q D I+ D +DL G+ K +LK
Sbjct: 94 VRKLGLKMALSDK-AQNDAIMFVDNIDL----------GEQPKTKKAVEFLK-------- 134
Query: 457 NLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKVVL 618
NLG+ + L V ++ E L+ + + + R L E ++V D+L K+V+
Sbjct: 135 NLGVDKET--LLIVIPEKNEVLYKSFRNLQ-NVRVLLPEGLNVYDVLWANKLVI 185
>ref|NP_215216.1| (NC_000962) rplD [Mycobacterium tuberculosis H37Rv]
ref|NP_335146.1| (NC_002755) ribosomal protein L4 [Mycobacterium tuberculosis
CDC1551]
sp|P95050|RL4_MYCTU 50S ribosomal protein L4
pir||A70642 probable rplD protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAB06465.1| (Z84395) rplD [Mycobacterium tuberculosis H37Rv]
gb|AAK44960.1| (AE006966) ribosomal protein L4 [Mycobacterium tuberculosis
CDC1551]
Length = 223
Score = 74.3 bits (181), Expect = 8e-13
Identities = 40/77 (51%), Positives = 47/77 (60%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT STKTR +V G RK QKGTGRAR G+ ++P GGG GP PRD+ +K
Sbjct: 52 RQGTHSTKTRGEVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKK 111
Query: 277 VYDKAWRTALSYRYRQG 327
+ A R ALS R R G
Sbjct: 112 MIAAALRGALSDRARNG 128
>sp|O06045|RL4_MYCBO 50S RIBOSOMAL PROTEIN L4
emb|CAA73673.1| (Y13228) rplD [Mycobacterium bovis BCG]
Length = 223
Score = 74.3 bits (181), Expect = 8e-13
Identities = 40/77 (51%), Positives = 47/77 (60%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT STKTR +V G RK QKGTGRAR G+ ++P GGG GP PRD+ +K
Sbjct: 52 RQGTHSTKTRGEVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKK 111
Query: 277 VYDKAWRTALSYRYRQG 327
+ A R ALS R R G
Sbjct: 112 MIAAALRGALSDRARNG 128
>gb|AAB41511.1| (U37797) ribosomal protein L4 [Haemophilus influenzae]
prf||2209238A ribosomal protein L4 [Morganella morganii]
Length = 200
Score = 73.9 bits (180), Expect = 1e-12
Identities = 42/91 (46%), Positives = 53/91 (58%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV RQGT + KTR +V GS +K QKGT RAR G +SPI R GG TF P+D
Sbjct: 31 VVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTARARAGDIKSPIWRSGGTTFAAKPQD 90
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
+N+K+Y A ++ LS RQ L+V E
Sbjct: 91 HSQKVNKKMYRGAIKSILSELVRQDRLVVVE 121
>sp|P55836|RL4_ACTAC 50S RIBOSOMAL PROTEIN L4
dbj|BAA10948.1| (D64071) ribosomal protein L4 [Actinobacillus
actinomycetemcomitans]
Length = 200
Score = 73.2 bits (178), Expect = 2e-12
Identities = 41/91 (45%), Positives = 54/91 (59%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV RQG+ + KTR +V GS +K QKGTGRAR G +SPI R GG TF P+D
Sbjct: 31 VVAYAAGARQGSRAQKTRAEVSGSGKKPWRQKGTGRARSGDIRSPIWRSGGVTFAAKPQD 90
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
+N+K+Y A ++ LS RQ L+V +
Sbjct: 91 HSQKVNKKMYRGAIKSILSELVRQDRLVVVD 121
>ref|NP_043616.1| (NC_001713) 50S ribosomal protein L4 [Odontella sinensis]
sp|P49546|RK4_ODOSI CHLOROPLAST 50S RIBOSOMAL PROTEIN L4
pir||S78275 ribosomal protein L4, chloroplast - Odontella sinensis chloroplast
emb|CAA91648.1| (Z67753) 50S ribosomal protein L4 [Odontella sinensis]
Length = 215
Score = 73.2 bits (178), Expect = 2e-12
Identities = 44/91 (48%), Positives = 53/91 (57%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT STKTR +V G RK QKGTGRAR G+ +SP+ +GGG FGP PR LN+K
Sbjct: 50 RQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPRKIILKLNKK 109
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLP 369
A +T L Y R I+ +L LP
Sbjct: 110 ERKLALQTLL-YNKRNNISIIDNLETNLDLP 139
>sp|O80361|RK4_TOBAC 50S RIBOSOMAL PROTEIN L4, CHLOROPLAST PRECURSOR (R-PROTEIN L4)
pir||T01739 ribosomal protein L4, chloroplast - common tobacco
dbj|BAA31510.1| (AB010878) chloroplast ribosomal protein L4 [Nicotiana tabacum]
Length = 282
Score = 72.8 bits (177), Expect = 2e-12
Identities = 41/85 (48%), Positives = 52/85 (60%), Gaps = 5/85 (5%)
Frame = +1
Query: 70 AVVYEG-----DNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTF 234
AVV+ G N R+GTAST TR +V G K PQK TGRAR G+ ++P+ GGG F
Sbjct: 75 AVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVF 134
Query: 235 GPHPRDFGTHLNRKVYDKAWRTALS 309
GP P+D+ +N+K A TALS
Sbjct: 135 GPKPKDWSVKINKKEKRLAISTALS 159
>gb|AAF79563.1|AC022464_21 (AC022464) F22G5.34 [Arabidopsis thaliana]
Length = 278
Score = 72.4 bits (176), Expect = 3e-12
Identities = 42/94 (44%), Positives = 57/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+V + +N R+GTAST TR +V G K QK TG AR G++++P+ GGG FGP P+
Sbjct: 86 AIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPK 145
Query: 250 DFGTHLNRKVYDKAWRTAL-SYRYRQGDLIVCED 348
D+ +NRK A TAL S +G IV E+
Sbjct: 146 DWSIKINRKEKKLAISTALSSAASAEGGAIVVEE 179
>ref|NP_294035.1| (NC_001263) ribosomal protein L4 [Deinococcus radiodurans]
pir||H75533 ribosomal protein L4 - Deinococcus radiodurans (strain R1)
pdb|1JZX|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1JZY|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1JZZ|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1K00|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
pdb|1K01|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gb|AAF09893.1|AE001892_4 (AE001892) ribosomal protein L4 [Deinococcus radiodurans]
Length = 205
Score = 72.4 bits (176), Expect = 3e-12
Identities = 58/183 (31%), Positives = 86/183 (46%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
V ++ + R+GTAST+TR V + RKM QKGTG AR G + P GGG FGP PR
Sbjct: 31 VTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRS 90
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLK 432
+ L R+V A++ R ++G +V DG D+ +A K
Sbjct: 91 YDYTLPRQVRQLGLAMAIASR-QEGGKLVAVDGFDIA------------------DAKTK 131
Query: 433 RYMTGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKV 612
+++ N GL + L VT D E A + W L + V+V D+L ++
Sbjct: 132 NFISWAKQN-GLD-GTEKVLLVTDD--ENTRRAARNVSWVS-VLPVAGVNVYDILRHDRL 186
Query: 613 VLE 621
V++
Sbjct: 187 VID 189
>sp|O50061|RK4_ARATH 50S RIBOSOMAL PROTEIN L4, CHLOROPLAST PRECURSOR (R-PROTEIN L4)
emb|CAA74895.1| (Y14566) ribosomal protein L4 [Arabidopsis thaliana]
emb|CAA74894.1| (Y14565) ribosomal protein L4 [Arabidopsis thaliana]
Length = 282
Score = 72.4 bits (176), Expect = 3e-12
Identities = 42/94 (44%), Positives = 57/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+V + +N R+GTAST TR +V G K QK TG AR G++++P+ GGG FGP P+
Sbjct: 86 AIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPK 145
Query: 250 DFGTHLNRKVYDKAWRTAL-SYRYRQGDLIVCED 348
D+ +NRK A TAL S +G IV E+
Sbjct: 146 DWSIKINRKEKKLAISTALSSAASAEGGAIVVEE 179
>ref|NP_563786.1| (NM_100606) expressed protein [Arabidopsis thaliana]
gb|AAL36245.1| (AY063889) unknown protein [Arabidopsis thaliana]
Length = 282
Score = 72.4 bits (176), Expect = 3e-12
Identities = 42/94 (44%), Positives = 57/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+V + +N R+GTAST TR +V G K QK TG AR G++++P+ GGG FGP P+
Sbjct: 86 AIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPK 145
Query: 250 DFGTHLNRKVYDKAWRTAL-SYRYRQGDLIVCED 348
D+ +NRK A TAL S +G IV E+
Sbjct: 146 DWSIKINRKEKKLAISTALSSAASAEGGAIVVEE 179
>pdb|1KPJ|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 204
Score = 72.4 bits (176), Expect = 3e-12
Identities = 58/183 (31%), Positives = 86/183 (46%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
V ++ + R+GTAST+TR V + RKM QKGTG AR G + P GGG FGP PR
Sbjct: 30 VTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRS 89
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLK 432
+ L R+V A++ R ++G +V DG D+ +A K
Sbjct: 90 YDYTLPRQVRQLGLAMAIASR-QEGGKLVAVDGFDIA------------------DAKTK 130
Query: 433 RYMTGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKV 612
+++ N GL + L VT D E A + W L + V+V D+L ++
Sbjct: 131 NFISWAKQN-GLD-GTEKVLLVTDD--ENTRRAARNVSWVS-VLPVAGVNVYDILRHDRL 185
Query: 613 VLE 621
V++
Sbjct: 186 VID 188
>ref|NP_472109.1| (NC_003212) ribosomal protein L4 [Listeria innocua]
ref|NP_466154.1| (NC_003210) ribosomal protein L4 [Listeria monocytogenes EGD-e]
emb|CAD00709.1| (AL591983) ribosomal protein L4 [Listeria monocytogenes]
emb|CAC98006.1| (AL596173) ribosomal protein L4 [Listeria innocua]
Length = 207
Score = 72.4 bits (176), Expect = 3e-12
Identities = 43/98 (43%), Positives = 54/98 (54%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT K R +V G RK QKGTGRAR G+ +SP RGGG FGP PR + L +K
Sbjct: 45 RQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKK 104
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVA 390
V A ++ LS + + L+V E G+ P E A
Sbjct: 105 VRRLAIKSILSSKVNEEKLVVLE-GLTFDAPKTKEFAA 141
>ref|NP_050770.1| (NC_000926) ribosomal protein L4 [Guillardia theta]
sp|O46895|RK4_GUITH CHLOROPLAST 50S RIBOSOMAL PROTEIN L4
gb|AAC35704.1| (AF041468) ribosomal protein L4 [Guillardia theta]
Length = 223
Score = 72.4 bits (176), Expect = 3e-12
Identities = 40/89 (44%), Positives = 49/89 (54%)
Frame = +1
Query: 91 NTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLN 270
N R G A TKTR +V G +K QKGTG AR G+ SP+ +GGG TFGP PR F N
Sbjct: 53 NNRSGNACTKTRSEVEGGGKKPWKQKGTGNARAGSSNSPLWKGGGVTFGPKPRTFSNKTN 112
Query: 271 RKVYDKAWRTALSYRYRQGDLIVCEDGMD 357
+K A TAL Y ++ D +D
Sbjct: 113 KKERLLALTTAL-YLKSNNTKVINLDNLD 140
>ref|NP_268255.1| (NC_002662) 50S ribosomal protein L4 [Lactococcus lactis subsp.
lactis]
gb|AAK06196.1|AE006438_10 (AE006438) 50S ribosomal protein L4 [Lactococcus lactis subsp.
lactis]
Length = 208
Score = 72.0 bits (175), Expect = 4e-12
Identities = 42/103 (40%), Positives = 56/103 (53%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
V+ + + RQGT + K R V G +K QKGTGRAR G+ +SP RGGG FGP+PR
Sbjct: 37 VISQRASLRQGTHAHKNRSAVSGGGKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRS 96
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYE 381
+ L +KV A ++ S + G LI D +D P E
Sbjct: 97 YAYKLPQKVRQLALKSVYSTKVADGKLIAV-DTLDFTAPKTAE 138
>ref|NP_372773.1| (NC_002758) 50S ribosomal protein L4 [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_375362.1| (NC_002745) 50S ribosomal protein L4 [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB43341.1| (AP003136) 50S ribosomal protein L4 [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB58411.1| (AP003364) 50S ribosomal protein L4 [Staphylococcus aureus subsp.
aureus Mu50]
Length = 207
Score = 72.0 bits (175), Expect = 4e-12
Identities = 39/92 (42%), Positives = 55/92 (59%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+ + + RQGT + K R V G RK QKGTGRAR GT ++P RGGG FGP PR
Sbjct: 36 AINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPR 95
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
+ + +K+ A R+ALS++ ++ L V +
Sbjct: 96 SYAYKMPKKMRRLALRSALSFKAQENGLTVVD 127
>ref|NP_302264.1| (NC_002677) 50S ribosomal protein L4 [Mycobacterium leprae]
sp|O32982|RL4_MYCLE 50S ribosomal protein L4
pir||T45365 ribosomal protein L4 [imported] - Mycobacterium leprae
emb|CAB11436.1| (Z98756) ribosomal protein L4 [Mycobacterium leprae]
emb|CAC30816.1| (AL583923) 50S ribosomal protein L4 [Mycobacterium leprae]
Length = 230
Score = 71.6 bits (174), Expect = 5e-12
Identities = 40/77 (51%), Positives = 46/77 (58%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT STKTR DV G RK QKGTGRAR G+ ++P GGG GP RD+ +K
Sbjct: 55 RQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSMRAPQFTGGGIVHGPKLRDYSQRTPKK 114
Query: 277 VYDKAWRTALSYRYRQG 327
+ A R ALS R R G
Sbjct: 115 MIAAALRGALSDRARNG 131
>ref|NP_268461.1| (NC_002737) 50S ribosomal protein L4 [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
ref|NP_606378.1| (NC_003485) 50S ribosomal protein L4 [Streptococcus pyogenes
MGAS8232]
gb|AAK33183.1| (AE006477) 50S ribosomal protein L4 [Streptococcus pyogenes M1 GAS]
gb|AAL96877.1| (AE009958) 50S ribosomal protein L4 [Streptococcus pyogenes
MGAS8232]
Length = 207
Score = 70.9 bits (172), Expect = 9e-12
Identities = 42/103 (40%), Positives = 56/103 (53%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
V+ + + RQGT + K R V G RK QKGTGRAR G+ +SP RGGG FGP PR
Sbjct: 37 VISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRS 96
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYE 381
+G L +KV A ++ S + + D V +G+ P E
Sbjct: 97 YGYKLPQKVRRLALKSVYSAKVAE-DKFVAVEGLSFAAPKTAE 138
>ref|NP_385463.1| (NC_003047) PROBABLE 50S RIBOSOMAL PROTEIN L4 [Sinorhizobium
meliloti]
emb|CAC45936.1| (AL591787) PROBABLE 50S RIBOSOMAL PROTEIN L4 [Sinorhizobium
meliloti]
Length = 206
Score = 70.5 bits (171), Expect = 1e-11
Identities = 58/174 (33%), Positives = 83/174 (47%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
+QGT +K R +V + KM QKGTGRAR + ++P RGGGK GP R L +K
Sbjct: 44 QQGTHKSKGRAEVSRTGAKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKK 103
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLKRYMTGVMS 456
+ R ALS + + D+IV +D +VA EA K + G +
Sbjct: 104 IRALGLRHALSAKLKAEDIIVIDD-----------LVA--------NEAKTKA-LAGAFA 143
Query: 457 NLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKVVL 618
+LGL A L + G E F Q + L ++ ++V D+L GK+VL
Sbjct: 144 SLGLTNA----LIIGGAEIEGNFKLAAQNIPNVDVLPVQGINVYDILRRGKLVL 193
>gb|AAD24390.1|AC006081_12 (AC006081) 50S ribosomal protein L4 [Arabidopsis thaliana]
Length = 266
Score = 70.1 bits (170), Expect = 1e-11
Identities = 42/92 (45%), Positives = 54/92 (58%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
+QGT STKT +V G+ RK QKGTGRAR GT + P RGG GP PR +N++
Sbjct: 98 QQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQ 157
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPT 372
V + AL+ R +G L+V + DL LPT
Sbjct: 158 VRRLGLKIALTARAAEGKLLVFD---DLGLPT 186
>ref|NP_565463.1| (NM_127564) 50S ribosomal protein L4 [Arabidopsis thaliana]
gb|AAL62411.1| (AY072419) 50S ribosomal protein L4 [Arabidopsis thaliana]
Length = 300
Score = 70.1 bits (170), Expect = 1e-11
Identities = 42/92 (45%), Positives = 54/92 (58%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
+QGT STKT +V G+ RK QKGTGRAR GT + P RGG GP PR +N++
Sbjct: 132 QQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQ 191
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPT 372
V + AL+ R +G L+V + DL LPT
Sbjct: 192 VRRLGLKIALTARAAEGKLLVFD---DLGLPT 220
>ref|NP_354922.1| (NC_003062) AGR_C_3553p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532625.1| (NC_003304) 50S ribosomal protein L4 [Agrobacterium tumefaciens
str. C58 (U. Washington)]
gb|AAK87707.1| (AE008112) AGR_C_3553p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL42941.1| (AE009147) 50S ribosomal protein L4 [Agrobacterium tumefaciens str.
C58 (U. Washington)]
Length = 206
Score = 69.7 bits (169), Expect = 2e-11
Identities = 58/174 (33%), Positives = 84/174 (47%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
+QGT TK R +V + KM QKGTGRAR + ++P RGGGK GP R L +K
Sbjct: 44 QQGTHKTKNRSEVSRTGAKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKK 103
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLKRYMTGVMS 456
V A R ALS + + +LI+ + ++VA EA K + G +
Sbjct: 104 VRALALRHALSAKLKAEELIIVD-----------QLVA--------SEAKTKA-LLGSFA 143
Query: 457 NLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKVVL 618
+LGL A L + G + F Q + L ++ ++V D+L GK+VL
Sbjct: 144 SLGLTNA----LVIGGAELDGNFKLAAQNIPNVDVLPVQGINVYDILRRGKLVL 193
>sp|O06114|RL4_MYCSM 50S RIBOSOMAL PROTEIN L4
emb|CAA73669.1| (Y13226) ribosomal protein L4 [Mycobacterium smegmatis]
Length = 215
Score = 69.7 bits (169), Expect = 2e-11
Identities = 37/75 (49%), Positives = 46/75 (61%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT STKTR +V G +K QKG+GRAR G+ ++P GGG GP PRD+ +K
Sbjct: 46 RQGTHSTKTRGEVSGGGKKPYRQKGSGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKK 105
Query: 277 VYDKAWRTALSYRYR 321
+ A R ALS R R
Sbjct: 106 MIAAALRGALSDRAR 120
>ref|NP_599749.1| (NC_003450) COG0088:Ribosomal protein L4 [Corynebacterium
glutamicum]
Length = 218
Score = 69.7 bits (169), Expect = 2e-11
Identities = 39/84 (46%), Positives = 49/84 (57%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
RQGT STKTR +V G RK QKGTGRAR G+ ++P GGG + GP PRD+ +K
Sbjct: 47 RQGTHSTKTRGEVRGGGRKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKK 106
Query: 277 VYDKAWRTALSYRYRQGDLIVCED 348
+ A ALS R R + V +
Sbjct: 107 MIKAALYGALSDRARNARIHVVSE 130
>ref|NP_078066.1| (NC_002162) ribosomal protein L4 [Ureaplasma urealyticum]
pir||A82915 ribosomal protein L4 UU232 [imported] - Ureaplasma urealyticum
gb|AAF30641.1|AE002122_10 (AE002122) ribosomal protein L4 [Ureaplasma urealyticum]
Length = 211
Score = 68.6 bits (166), Expect = 4e-11
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHP- 246
+V+ E RQGT ST T+ +V G +K QK TG+AR G+ ++P GGG FGP P
Sbjct: 36 SVLAENAAERQGTHSTLTKGEVRGGGKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPN 95
Query: 247 RDFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMV 387
R++ +N KV A+++AL+ + +G ++ DL P+ +MV
Sbjct: 96 RNYNLKVNAKVRLLAFKSALTIKLNEGKMLGLVANSDLETPSTKKMV 142
>emb|CAB82071.1| (AL161803) 50S ribosomal protein L4 [Streptomyces coelicolor A3(2)]
Length = 219
Score = 68.2 bits (165), Expect = 6e-11
Identities = 38/89 (42%), Positives = 49/89 (54%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV + RQGT TK R +V G +K QKGTGRAR G+ ++P GGG GP PRD
Sbjct: 38 VVAQNAAARQGTHKTKRRGEVRGGGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRD 97
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIV 339
+ +K+ A R AL+ R R + V
Sbjct: 98 YSQRTPKKMKAAALRHALTDRARHNRIHV 126
>ref|NP_344750.1| (NC_003028) ribosomal protein L4 [Streptococcus pneumoniae TIGR4]
ref|NP_357783.1| (NC_003098) 50S Ribosomal protein L4 [Streptococcus pneumoniae R6]
gb|AAK74390.1| (AE007335) ribosomal protein L4 [Streptococcus pneumoniae TIGR4]
gb|AAK98993.1| (AE008401) 50S Ribosomal protein L4 [Streptococcus pneumoniae R6]
Length = 207
Score = 67.8 bits (164), Expect = 7e-11
Identities = 40/103 (38%), Positives = 55/103 (52%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
++ + + RQGT + K R V G RK QKGTGRAR G+ +SP RGGG FGP PR
Sbjct: 37 IISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRS 96
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYE 381
+G L +KV A ++ S + + + V D + P E
Sbjct: 97 YGYKLPQKVRRLALKSVYSEKVAE-NKFVAVDALSFTAPKTAE 138
>ref|NP_045186.1| (NC_001840) unknown; 50S ribosomal protein L4 [Cyanidium caldarium]
gb|AAF12908.1|AF022186_30 (AF022186) unknown; 50S ribosomal protein L4 [Cyanidium caldarium]
Length = 219
Score = 67.4 bits (163), Expect = 9e-11
Identities = 37/93 (39%), Positives = 54/93 (57%)
Frame = +1
Query: 94 TRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNR 273
+R+ TASTKT+ V G +K QKGTGRAR G+ +SP+ RGGG FGP P++ +N+
Sbjct: 52 SREHTASTKTKSQVRGGGKKPWKQKGTGRARAGSIRSPLWRGGGVVFGPKPKNVFFKINK 111
Query: 274 KVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPT 372
K A T LS + ++ +G+ + T
Sbjct: 112 KEIRLALYTVLSNALPKTTVVSSLEGLPNFIST 144
>ref|NP_072815.1| (NC_000908) ribosomal protein L4 (rpL4) [Mycoplasma genitalium]
sp|P47398|RL4_MYCGE 50S ribosomal protein L4
pir||H64216 ribosomal protein L4 - Mycoplasma genitalium
gb|AAC71370.1| (U39696) ribosomal protein L4 (rpL4) [Mycoplasma genitalium]
Length = 211
Score = 65.9 bits (159), Expect = 3e-10
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHP- 246
A++ E RQGT ST T+ +V G +K QK TG+AR G+ ++P GGG FGP P
Sbjct: 36 AILLEQAACRQGTHSTLTKGEVSGGGKKPYKQKHTGKARQGSIRNPHYVGGGVVFGPKPN 95
Query: 247 RDFGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
R++ LN+K Y A +A + + +IV E
Sbjct: 96 RNYKLKLNKKAYQLALTSAFAQKLNNNQVIVAE 128
>gb|AAH00756.1|AAH00756 (BC000756) Similar to CGI-28 protein [Homo sapiens]
Length = 263
Score = 63.5 bits (153), Expect = 1e-09
Identities = 40/89 (44%), Positives = 50/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 109 ASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPH-PRDFGTHLNRKVYD 285
A TKTR +V G RK PQKGTGRAR G+ +SP+ RGGG GP P + L KV
Sbjct: 112 AKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRA 171
Query: 286 KAWRTALSYRYRQGDLIVCEDGMDLVLPT 372
+ AL+ + Q DL + + L LPT
Sbjct: 172 LGLKVALTVKLAQDDLHIMD---SLELPT 197
>gb|AAG02005.1| (AY007152) similar to Homo sapiens CGI-28 protein mRNA with GenBank
Accession Number AF132962
Length = 211
Score = 63.5 bits (153), Expect = 1e-09
Identities = 40/89 (44%), Positives = 50/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 109 ASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPH-PRDFGTHLNRKVYD 285
A TKTR +V G RK PQKGTGRAR G+ +SP+ RGGG GP P + L KV
Sbjct: 12 AKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRA 71
Query: 286 KAWRTALSYRYRQGDLIVCEDGMDLVLPT 372
+ AL+ + Q DL + + L LPT
Sbjct: 72 LGLKVALTVKLAQDDLHIMD---SLELPT 97
>ref|XP_049502.1| (XM_049502) mitochondrial ribosomal protein L4 [Homo sapiens]
dbj|BAB40840.1| (AB049635) mitochondrial ribosomal protein L4 (L4mt) [Homo sapiens]
gb|AAH09858.1|AAH09858 (BC009858) Unknown (protein for MGC:16367) [Homo sapiens]
Length = 311
Score = 63.5 bits (153), Expect = 1e-09
Identities = 40/89 (44%), Positives = 50/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 109 ASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPH-PRDFGTHLNRKVYD 285
A TKTR +V G RK PQKGTGRAR G+ +SP+ RGGG GP P + L KV
Sbjct: 112 AKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRA 171
Query: 286 KAWRTALSYRYRQGDLIVCEDGMDLVLPT 372
+ AL+ + Q DL + + L LPT
Sbjct: 172 LGLKVALTVKLAQDDLHIMD---SLELPT 197
>ref|NP_563320.1| (NC_003366) 50S ribosomal protein L4 [Clostridium perfringens]
dbj|BAB82110.1| (AP003194) 50S ribosomal protein L4 [Clostridium perfringens]
Length = 175
Score = 63.5 bits (153), Expect = 1e-09
Identities = 38/92 (41%), Positives = 52/92 (56%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV + N RQGT S KTR +V G K QKGTGRAR G+ ++P GG F P PRD
Sbjct: 37 VVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRD 96
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCED 348
+ + + + A +AL+ + D++V ED
Sbjct: 97 YRMSIPKSMRKVAMTSALTSKV--ADMVVLED 126
>ref|NP_349731.1| (NC_003030) Ribosomal protein L4 [Clostridium acetobutylicum]
gb|AAK81071.1|AE007808_24 (AE007808) Ribosomal protein L4 [Clostridium acetobutylicum]
Length = 206
Score = 63.2 bits (152), Expect = 2e-09
Identities = 36/92 (39%), Positives = 52/92 (56%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV + N RQGT S KTR +V G K QKGTGRAR G+ ++P GG F P PRD
Sbjct: 37 VVAQLANKRQGTQSAKTRTEVSGGGIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRD 96
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCED 348
+ + + + A +AL+ + ++IV ++
Sbjct: 97 YRISIPKSMRRTAMLSALTSKVNDKEMIVLDE 128
>ref|NP_224842.1| (NC_000922) L4 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
ref|NP_300702.1| (NC_002491) L4 ribosomal protein [Chlamydophila pneumoniae J138]
ref|NP_444653.1| (NC_002179) ribosomal protein L4 [Chlamydophila pneumoniae AR39]
sp|Q9Z7Q8|RL4_CHLPN 50S RIBOSOMAL PROTEIN L4
pir||H72055 ribosomal protein L4 CP0101 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39)
gb|AAD18785.1| (AE001647) L4 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
gb|AAF37985.1| (AE002173) ribosomal protein L4 [Chlamydophila pneumoniae AR39]
dbj|BAA98853.1| (AP002547) L4 ribosomal protein [Chlamydophila pneumoniae J138]
Length = 224
Score = 62.4 bits (150), Expect = 3e-09
Identities = 43/109 (39%), Positives = 57/109 (51%), Gaps = 3/109 (2%)
Frame = +1
Query: 91 NTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTH-- 264
N RQ +A T+ R +V S +K QKGTG AR G SP RGGG FGP P+ F H
Sbjct: 44 NKRQWSACTRNRSEVSHSTKKPFKQKGTGNARQGCLASPQFRGGGIVFGPKPK-FNQHVR 102
Query: 265 LNRKVYDKAWRTALSYRYRQGDLIVCEDGMDL-VLPTDYEMVAGKYLKD 408
+NRK A R L+ + + L V +D + + L A ++LKD
Sbjct: 103 INRKERKAAIRLLLAQKIQTNKLTVVDDTVFVDALTAPKTQSALRFLKD 151
>ref|NP_273201.1| (NC_003112) 50S ribosomal protein L4 [Neisseria meningitidis MC58]
ref|NP_282978.1| (NC_003116) 50S ribosomal protein L4 [Neisseria meningitidis Z2491]
pir||A81231 50S ribosomal protein L4 NMB0143 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
gb|AAF40601.1| (AE002373) 50S ribosomal protein L4 [Neisseria meningitidis MC58]
emb|CAB83443.1| (AL162752) 50S ribosomal protein L4 [Neisseria meningitidis Z2491]
Length = 206
Score = 62.4 bits (150), Expect = 3e-09
Identities = 58/177 (32%), Positives = 76/177 (42%), Gaps = 1/177 (0%)
Frame = +1
Query: 91 NTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHP-RDFGTHL 267
N R G + KTR +V S +K QKGTGRAR G SP+ R GG+ F P +F +
Sbjct: 42 NARSGNRAQKTRAEVKHSTKKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKV 101
Query: 268 NRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLKRYMTG 447
NRK+Y T LS R L E L T V + +K
Sbjct: 102 NRKMYRAGMATILSQLTRDERLFAIE---ALTAETPKTKVFAEQVK-------------- 144
Query: 448 VMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDVDVKDLLETGKVVL 618
NLGL + LFVT E ++ A +P + L + VD LL KV++
Sbjct: 145 ---NLGL----EQVLFVTKQLDENVYLASRNLP-NVLVLEAQQVDPYSLLRYKKVII 193
>ref|NP_297187.1| (NC_002620) ribosomal protein L4 [Chlamydia muridarum]
sp|Q9PJL5|RL4_CHLMU 50S ribosomal protein L4
pir||C81661 ribosomal protein L4 TC0814 [imported] - Chlamydia muridarum
(strain Nigg)
gb|AAF39616.1| (AE002347) ribosomal protein L4 [Chlamydia muridarum]
Length = 222
Score = 62.4 bits (150), Expect = 3e-09
Identities = 37/89 (41%), Positives = 50/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 91 NTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR-DFGTHL 267
N RQ +A T+ R +V S RK QKGTG AR G +P RGGG FGP P+ D +
Sbjct: 42 NKRQWSACTRGRSEVSHSTRKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRI 101
Query: 268 NRKVYDKAWRTALSYRYRQGDLIVCEDGM 354
N+K A R L+ + + G LIV ++ +
Sbjct: 102 NKKERRAAIRLLLAQKIQTGKLIVADNSV 130
>ref|NP_220042.1| (NC_000117) L4 Ribosomal Protein [Chlamydia trachomatis]
sp|O84532|RL4_CHLTR 50S ribosomal protein L4
pir||E71507 probable L4 ribosomal protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68128.1| (AE001323) L4 Ribosomal Protein [Chlamydia trachomatis]
Length = 222
Score = 62.0 bits (149), Expect = 4e-09
Identities = 37/89 (41%), Positives = 50/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 91 NTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR-DFGTHL 267
N RQ +A T+ R +V S +K QKGTG AR G +P RGGG FGP P+ D +
Sbjct: 42 NKRQWSACTRGRSEVSHSTKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRI 101
Query: 268 NRKVYDKAWRTALSYRYRQGDLIVCEDGM 354
N+K A R L+ + + G LIV E+ +
Sbjct: 102 NKKERRAAIRLLLAQKIQTGKLIVAENSV 130
>sp|Q9XD35|RL4_LEPIN 50S RIBOSOMAL PROTEIN L4
gb|AAD40584.1|AF115283_3 (AF115283) ribosomal protein L4 [Leptospira interrogans]
Length = 211
Score = 61.6 bits (148), Expect = 5e-09
Identities = 35/93 (37%), Positives = 50/93 (53%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPR 249
A+ E N R G +TKTR V G +K QKGTGRAR G+ ++P GGG GP R
Sbjct: 35 AIKAENANLRSGNHATKTRSMVSGGGKKPWSQKGTGRARQGSTRAPHWVGGGTVHGPQKR 94
Query: 250 DFGTHLNRKVYDKAWRTALSYRYRQGDLIVCED 348
D+ ++ K+ +A + L + + + V ED
Sbjct: 95 DYSYKVSSKLKHRAVLSILGKKAQASAVKVVED 127
>ref|NP_539675.1| (NC_003317) LSU ribosomal protein L1E (= L4P) [Brucella melitensis]
gb|AAL51939.1| (AE009518) LSU ribosomal protein L1E (= L4P) [Brucella melitensis]
Length = 201
Score = 61.2 bits (147), Expect = 7e-09
Identities = 40/111 (36%), Positives = 59/111 (53%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
+QG+ + R DV + KM QKGTGRAR + ++P RGGG+ GP R+ L +K
Sbjct: 44 QQGSHKAQGRGDVSRTGSKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKK 103
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYL 429
V R ALS + + DLI+ +D T + + ++ K GL+ A L
Sbjct: 104 VRALGLRHALSAKAKASDLIIIDDLASADAKT--KQLVSQFAKLGLENALL 152
>ref|NP_521139.1| (NC_003295) PROBABLE 50S RIBOSOMAL PROTEIN L4 (RRNA-BINDING
TRANSLATION REGULATION REPRESSOR RNA-BINDING) [Ralstonia
solanacearum]
emb|CAD16727.1| (AL646073) PROBABLE 50S RIBOSOMAL PROTEIN L4 (RRNA-BINDING
TRANSLATION REGULATION REPRESSOR RNA-BINDING) [Ralstonia
solanacearum]
Length = 206
Score = 60.5 bits (145), Expect = 1e-08
Identities = 41/115 (35%), Positives = 60/115 (51%), Gaps = 1/115 (0%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
V Y+ N R G K R +V + +K QKGTGRAR G SP+ RGGG+ F P +
Sbjct: 37 VAYQA-NARSGNRKQKDREEVKHTTKKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEE 95
Query: 253 -FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGL 414
F +N+K+Y R+ S R+G + V D + + P +++A K+ GL
Sbjct: 96 NFSQKVNKKMYRAGMRSIYSQLAREGRINVV-DSLSVDAPKT-KLLADKFRAMGL 148
>ref|NP_109854.1| (NC_000912) ribosomal protein L4 [Mycoplasma pneumoniae]
sp|P75579|RL4_MYCPN 50S ribosomal protein L4
pir||S73991 ribosomal protein L4 - Mycoplasma pneumoniae (strain ATCC 29342)
gb|AAB96313.1| (AE000061) ribosomal protein L4 [Mycoplasma pneumoniae]
Length = 212
Score = 60.1 bits (144), Expect = 2e-08
Identities = 34/81 (41%), Positives = 47/81 (57%), Gaps = 1/81 (1%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHP- 246
AV+ E + RQGT S T+ +V G +K QK TG+AR G+ ++P GGG FGP P
Sbjct: 37 AVLVEQASWRQGTHSILTKGEVRGGGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPN 96
Query: 247 RDFGTHLNRKVYDKAWRTALS 309
R++ LN+K + A T S
Sbjct: 97 RNYSLKLNKKAHTAALHTVWS 117
>dbj|BAB22118.1| (AK002464) data source:MGD, source key:MGI:2137210,
evidence:ISS~mitochondrial ribosomal protein L4~putative
[Mus musculus]
dbj|BAB40839.1| (AB049634) mitochondrial ribosomal protein L4 (L4mt) [Mus musculus]
Length = 294
Score = 59.7 bits (143), Expect = 2e-08
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +1
Query: 76 VYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPH-PRD 252
+++ + R A+TKTR +V G RK QKG+GRAR G+ +SP+ RGGG GP P
Sbjct: 101 IWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTS 160
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPT 372
+ L KV + AL+ + Q DL + + L LPT
Sbjct: 161 YYYMLPMKVRALGLKVALTVKLMQDDLHIVD---SLELPT 197
>ref|NP_326418.1| (NC_002771) 50S RIBOSOMAL PROTEIN L4 [Mycoplasma pulmonis]
emb|CAC13760.1| (AL445565) 50S RIBOSOMAL PROTEIN L4 [Mycoplasma pulmonis]
Length = 292
Score = 58.9 bits (141), Expect = 3e-08
Identities = 30/70 (42%), Positives = 45/70 (63%), Gaps = 1/70 (1%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPH-PR 249
++ E + RQGT K R +V G+ +K QKGTG+AR G+ ++PI GGG+ FGP R
Sbjct: 122 ILSERASRRQGTHKVKNRAEVSGTGKKPWKQKGTGKARAGSLRNPIFVGGGRAFGPSVNR 181
Query: 250 DFGTHLNRKV 279
++ +N+KV
Sbjct: 182 NYKISINKKV 191
>ref|NP_298443.1| (NC_002488) 50S ribosomal protein L4 [Xylella fastidiosa 9a5c]
pir||A82717 50S ribosomal protein L4 XF1153 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF83963.1|AE003950_13 (AE003950) 50S ribosomal protein L4 [Xylella fastidiosa 9a5c]
Length = 202
Score = 58.9 bits (141), Expect = 3e-08
Identities = 37/91 (40%), Positives = 47/91 (50%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
VV + R GT + K+R V G+ +K + QKG G AR G +PI GGG F PR
Sbjct: 32 VVAYRNTARSGTKAQKSRSQVSGTTKKSKKQKGGG-ARHGALTAPIFVGGGVAFAAKPRS 90
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCE 345
F +NRK Y A + S RQG L V +
Sbjct: 91 FSQKVNRKQYRSAICSIFSELNRQGRLKVVD 121
>sp|O52333|RL4_MYCGA 50S RIBOSOMAL PROTEIN L4
gb|AAB95388.1| (AF036708) ribosomal protein L4 [Mycoplasma gallisepticum]
Length = 209
Score = 58.2 bits (139), Expect = 6e-08
Identities = 33/96 (34%), Positives = 55/96 (56%), Gaps = 1/96 (1%)
Frame = +1
Query: 70 AVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHP- 246
A++ E + QGT ST + +V G +K QK TGRAR G+ ++P GGG FGP P
Sbjct: 36 AILAENLSQIQGTHSTLKKGEVSGGGKKPYQQKHTGRARQGSIRNPHYVGGGIAFGPKPN 95
Query: 247 RDFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGM 354
R++ +N+KV A+++A++ + + + D +
Sbjct: 96 RNYKIKVNKKVSSLAFKSAITSKVNNNEFLGLVDSI 131
>ref|NP_360642.1| (NC_003103) 50S ribosomal protein L4 [Rickettsia conorii]
gb|AAL03543.1| (AE008652) 50S ribosomal protein L4 [Rickettsia conorii]
Length = 207
Score = 55.8 bits (133), Expect = 3e-07
Identities = 33/81 (40%), Positives = 44/81 (53%)
Frame = +1
Query: 103 GTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRKVY 282
G TKT +V G+ +K QKGTG AR G+ +S +RGGG GP R T L +KV
Sbjct: 47 GNHKTKTVSEVLGTTKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVR 106
Query: 283 DKAWRTALSYRYRQGDLIVCE 345
ALS + +G L+V +
Sbjct: 107 KLGLIHALSEKCAEGKLLVID 127
>ref|NP_524939.1| (NM_080200) mitochondrial ribosomal protein L4; lethal(2)35Fe
[Drosophila melanogaster]
ref|XP_079567.1| (XM_079567) mitochondrial ribosomal protein L4 [Drosophila
melanogaster]
gb|AAF45007.1|AE003406_212 (AE003416) symbol=l(2)35Fe; synonym=BG:DS02740.17;
cDNA=method:''sim4'', score:''1000.0'', desc:''l(2)35Fe
Drosophila melanogaster embryo cDNA clone, full length
mRNA sequence from BDGP (Ling Hong & Damon Harvey,
unpublished)''; match=method:''BLASTX''>
gb|AAF53526.1| (AE003650) l(2)35Fe gene product [Drosophila melanogaster]
gb|AAL28955.1| (AY061407) LD33485p [Drosophila melanogaster]
Length = 296
Score = 55.8 bits (133), Expect = 3e-07
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +1
Query: 109 ASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRKVYDK 288
A TKTR +V G RK PQKG GRAR G+ +SP+L+GGG G PR TH + K
Sbjct: 115 AHTKTRAEVRGGGRKPWPQKGGGRARHGSLRSPMLKGGGVVHG--PRSPTTHFYMLPFYK 172
Query: 289 ---AWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKE 420
+ LS + Q DL + D +D +PT ++LKD + E
Sbjct: 173 RVLGLTSTLSVKLAQDDLHII-DNVD--IPTG----DAEFLKDLIAE 212
>ref|NP_102121.1| (NC_002678) 50S ribosomal protein L4 [Mesorhizobium loti]
dbj|BAB47907.1| (AP002994) 50S ribosomal protein L4 [Mesorhizobium loti]
Length = 206
Score = 55.8 bits (133), Expect = 3e-07
Identities = 55/175 (31%), Positives = 79/175 (44%), Gaps = 1/175 (0%)
Frame = +1
Query: 97 RQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRDFGTHLNRK 276
+QGT K R ++ + KM QKGTGRAR + ++P RGGGK GP R L +
Sbjct: 44 QQGTHKAKGRAEIARTGAKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKN 103
Query: 277 VYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKYLKDGLKEAYLKRYMTGVMS 456
V + ALS + + +IV ++ LK L EA K + +
Sbjct: 104 VRALGLKHALSAKAKSASIIVIDE-----------------LK--LTEAKTKALIAN-FA 143
Query: 457 NLGLGRAAGRTLFVTGDRREALFD-AMEQIPWDGRALGIEDVDVKDLLETGKVVL 618
LGL A L + G + F A IP + L I+ ++V D+L G +VL
Sbjct: 144 TLGLSNA----LVIGGAELDKNFKLAATNIP-NIDVLPIQGINVYDILRRGTLVL 193
>ref|NP_420062.1| (NC_002696) ribosomal protein L4 [Caulobacter crescentus CB15]
gb|AAK23230.1| (AE005801) ribosomal protein L4 [Caulobacter crescentus CB15]
Length = 212
Score = 54.3 bits (129), Expect = 8e-07
Identities = 40/119 (33%), Positives = 59/119 (48%), Gaps = 2/119 (1%)
Frame = +1
Query: 73 VVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRGGGKTFGPHPRD 252
V ++ R G + R +V + +KM QKGTG AR G++++ GG K GP R
Sbjct: 37 VTWQLAKRRSGNHKIQVRNEVSRTSKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRS 96
Query: 253 FGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVA--GKYLKDGLKEA 423
L +K+ A R ALS + + G L+V +D V T+ + A + K GLK A
Sbjct: 97 HAFDLPKKIRALALRHALSSKAKAGSLVV----VDSVALTEAKTAALRATFDKIGLKNA 151
>ref|NP_221022.1| (NC_000963) 50S RIBOSOMAL PROTEIN L4 (rplD) [Rickettsia prowazekii]
sp|Q9ZCQ6|RL4_RICPR 50S ribosomal protein L4
pir||H71671 ribosomal protein L4 - Rickettsia prowazekii
emb|CAA15098.1| (AJ235272) 50S