BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_10_C16.seq
(623 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS009CE07F.B mgns009cE07f.b LENGTH:418bp ; DIRECTION:0 ; CLONE... 30 0.23
CL23CT29CN32 cl23ct29cn32 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:4... 30 0.23
MGNS013DC09F.B mgns013dC09f.b LENGTH:408bp ; DIRECTION:0 ; CLONE... 28 0.92
MGNS008BG08F.B mgns008bG08f.b LENGTH:294bp ; DIRECTION:0 ; CLONE... 28 0.92
CL19CT24CN26 cl19ct24cn26 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:7... 28 0.92
MGNS010CG03F.B mgns010cG03f.b LENGTH:454bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS010AC05F.B mgns010aC05f.b LENGTH:538bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS007AF11F.B mgns007aF11f.b LENGTH:514bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS002CE10F.B mgns002cE10f.b LENGTH:336bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS002CA02F.B mgns002cA02f.b LENGTH:352bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS002BB11F.B mgns002bB11f.b LENGTH:460bp ; DIRECTION:0 ; CLONE... 26 3.6
CL96CT107CN111 cl96ct107cn111 COVERAGE:0.98; CRAWID: 1; TOTAL_ES... 26 3.6
>MGNS009CE07F.B mgns009cE07f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 418
Score = 30.2 bits (15), Expect = 0.23
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 cttcaccttgccgtt 75
|||||||||||||||
Sbjct: 340 cttcaccttgccgtt 354
>CL23CT29CN32 cl23ct29cn32 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:4;
ESTS:mgns001aE02f.b,mgns002
Length = 601
Score = 30.2 bits (15), Expect = 0.23
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 578 tcgacgtcaaggacc 592
|||||||||||||||
Sbjct: 325 tcgacgtcaaggacc 339
>MGNS013DC09F.B mgns013dC09f.b LENGTH:408bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 408
Score = 28.2 bits (14), Expect = 0.92
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 caagcaaagtccca 208
||||||||||||||
Sbjct: 283 caagcaaagtccca 270
>MGNS008BG08F.B mgns008bG08f.b LENGTH:294bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 294
Score = 28.2 bits (14), Expect = 0.92
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 380 agatggttgctgga 393
||||||||||||||
Sbjct: 95 agatggttgctgga 82
>CL19CT24CN26 cl19ct24cn26 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:7;
ESTS:mgns001aD01f.b,mgns001
Length = 829
Score = 28.2 bits (14), Expect = 0.92
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 577 gtcgacgtcaagga 590
||||||||||||||
Sbjct: 557 gtcgacgtcaagga 570
>MGNS010CG03F.B mgns010cG03f.b LENGTH:454bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 454
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 381 gatggttgctgga 393
|||||||||||||
Sbjct: 169 gatggttgctgga 157
>MGNS010AC05F.B mgns010aC05f.b LENGTH:538bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 538
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 248 gcgactttggcac 260
|||||||||||||
Sbjct: 67 gcgactttggcac 79
>MGNS007AF11F.B mgns007aF11f.b LENGTH:514bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 514
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 405 ggatggactaaag 417
|||||||||||||
Sbjct: 50 ggatggactaaag 62
>MGNS002CE10F.B mgns002cE10f.b LENGTH:336bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 336
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 576 tgtcgacgtcaag 588
|||||||||||||
Sbjct: 330 tgtcgacgtcaag 318
>MGNS002CA02F.B mgns002cA02f.b LENGTH:352bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 352
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 573 ggatgtcgacgtc 585
|||||||||||||
Sbjct: 21 ggatgtcgacgtc 9
>MGNS002BB11F.B mgns002bB11f.b LENGTH:460bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 460
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 61 cttcaccttgccg 73
|||||||||||||
Sbjct: 242 cttcaccttgccg 230
>CL96CT107CN111 cl96ct107cn111 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgns001dF06f.b,mgns0
Length = 537
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 423 gtatctcaagcga 435
|||||||||||||
Sbjct: 484 gtatctcaagcga 472
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 205
Number of Sequences: 1206
Number of extensions: 205
Number of successful extensions: 62
Number of sequences better than 10.0: 12
length of query: 623
length of database: 496,015
effective HSP length: 14
effective length of query: 609
effective length of database: 479,131
effective search space: 291790779
effective search space used: 291790779
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)