BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_10_E01.seq
(498 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL10CT11CN11 cl10ct11cn11 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:3... 111 6e-26
CL221CT232CN238 cl221ct232cn238 COVERAGE:0.99; CRAWID: 1; TOTAL_... 40 2e-04
CL33CT39CN42 cl33ct39cn42 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6... 30 0.19
MGNS001CA12F.B mgns001cA12f.b LENGTH:278bp ; DIRECTION:0 ; CLONE... 28 0.73
CL255CT267CN273 cl255ct267cn273 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 0.73
CL216CT227CN233 cl216ct227cn233 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 0.73
CL162CT173CN179 cl162ct173cn179 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 0.73
MGNS013DF01F.B mgns013dF01f.b LENGTH:427bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS013CE09F.B mgns013cE09f.b LENGTH:409bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS013AG09F.B mgns013aG09f.b LENGTH:305bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS013AG04F.B mgns013aG04f.b LENGTH:267bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS011DG01F.B mgns011dG01f.b LENGTH:428bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS011BH01F.B mgns011bH01f.b LENGTH:379bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS011BG09F.B mgns011bG09f.b LENGTH:354bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS011AE01F.B mgns011aE01f.b LENGTH:405bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS010AB08F.B mgns010aB08f.b LENGTH:494bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS010AB01F.B mgns010aB01f.b LENGTH:330bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS008AB08F.B mgns008aB08f.b LENGTH:399bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS007CE07F.B mgns007cE07f.b LENGTH:399bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS002DF05F.B mgns002dF05f.b LENGTH:276bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS002DA02F.B mgns002dA02f.b LENGTH:373bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS002CG05F.B mgns002cG05f.b LENGTH:424bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS001DE02F.B mgns001dE02f.b LENGTH:418bp ; DIRECTION:0 ; CLONE... 26 2.9
CL79CT88CN92 cl79ct88cn92 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:1;... 26 2.9
CL212CT223CN229 cl212ct223cn229 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 2.9
CL132CT143CN148 cl132ct143cn148 COVERAGE:0.97; CRAWID: 1; TOTAL_... 26 2.9
>CL10CT11CN11 cl10ct11cn11 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgns001aB05f.b,mgns007
Length = 370
Score = 111 bits (56), Expect = 6e-26
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 94 caccagcttcgtccgcggcaaggccactctccccgatcttccctacgactatggcgctct 153
||||||||| ||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct: 186 caccagctttgtccgcggcaaggccacactccccgacctgaagtacgactacggcgcgct 245
Query: 154 tgagccctacatctctggccagatcatggagcttcaccactccaagcaccac 205
|||||||||||||| | | ||||||||||||| ||||||||||||||||||
Sbjct: 246 cgagccctacatctcggccgagatcatggagctccaccactccaagcaccac 297
>CL221CT232CN238 cl221ct232cn238 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007dH04f.b,mgns
Length = 491
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cgacgccaaggctgctgccg 287
||||||||||||||||||||
Sbjct: 334 cgacgccaaggctgctgccg 353
>CL33CT39CN42 cl33ct39cn42 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:mgns001bA01f.b,mgns001
Length = 1060
Score = 30.2 bits (15), Expect = 0.19
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 389 gagggcaagcttctg 403
|||||||||||||||
Sbjct: 636 gagggcaagcttctg 650
>MGNS001CA12F.B mgns001cA12f.b LENGTH:278bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 278
Score = 28.2 bits (14), Expect = 0.73
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 238 cgacgccatcgccgaggc 255
||||| ||||||||||||
Sbjct: 123 cgacgacatcgccgaggc 140
>CL255CT267CN273 cl255ct267cn273 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns009dC02f.b,mgns
Length = 341
Score = 28.2 bits (14), Expect = 0.73
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 417 aggactttggctcc 430
||||||||||||||
Sbjct: 147 aggactttggctcc 160
>CL216CT227CN233 cl216ct227cn233 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns007dC11f.b,mgns
Length = 510
Score = 28.2 bits (14), Expect = 0.73
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 gcggcaaggccact 121
||||||||||||||
Sbjct: 354 gcggcaaggccact 367
Score = 28.2 bits (14), Expect = 0.73
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 242 gccatcgccgaggc 255
||||||||||||||
Sbjct: 185 gccatcgccgaggc 198
>CL162CT173CN179 cl162ct173cn179 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:16; ESTS:mgns004aB07f.b,mgn
Length = 638
Score = 28.2 bits (14), Expect = 0.73
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 caaccacaagggcg 269
||||||||||||||
Sbjct: 296 caaccacaagggcg 309
>MGNS013DF01F.B mgns013dF01f.b LENGTH:427bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 427
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 435 aggccttcaagaa 447
|||||||||||||
Sbjct: 148 aggccttcaagaa 160
>MGNS013CE09F.B mgns013cE09f.b LENGTH:409bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 409
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 388 cgagggcaagctt 400
|||||||||||||
Sbjct: 400 cgagggcaagctt 388
>MGNS013AG09F.B mgns013aG09f.b LENGTH:305bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 305
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 192 actccaagcacca 204
|||||||||||||
Sbjct: 81 actccaagcacca 69
>MGNS013AG04F.B mgns013aG04f.b LENGTH:267bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 267
Score = 26.3 bits (13), Expect = 2.9
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 205 ccagacctacgttaccg 221
|||||||||||| ||||
Sbjct: 228 ccagacctacgtcaccg 244
>MGNS011DG01F.B mgns011dG01f.b LENGTH:428bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 428
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 329 aaccactccctct 341
|||||||||||||
Sbjct: 38 aaccactccctct 50
>MGNS011BH01F.B mgns011bH01f.b LENGTH:379bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 379
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 174 agatcatggagct 186
|||||||||||||
Sbjct: 212 agatcatggagct 224
>MGNS011BG09F.B mgns011bG09f.b LENGTH:354bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 354
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 371 ggcggtggtggtg 383
|||||||||||||
Sbjct: 338 ggcggtggtggtg 326
>MGNS011AE01F.B mgns011aE01f.b LENGTH:405bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 405
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 371 ggcggtggtggtg 383
|||||||||||||
Sbjct: 146 ggcggtggtggtg 158
>MGNS010AB08F.B mgns010aB08f.b LENGTH:494bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 494
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 371 ggcggtggtggtg 383
|||||||||||||
Sbjct: 334 ggcggtggtggtg 346
>MGNS010AB01F.B mgns010aB01f.b LENGTH:330bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 330
Score = 26.3 bits (13), Expect = 2.9
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 262 caagggcgacgccaagg 278
||||||||||| |||||
Sbjct: 115 caagggcgacggcaagg 131
>MGNS008AB08F.B mgns008aB08f.b LENGTH:399bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 399
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 388 cgagggcaagctt 400
|||||||||||||
Sbjct: 343 cgagggcaagctt 355
>MGNS007CE07F.B mgns007cE07f.b LENGTH:399bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 399
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 96 ccagcttcgtccg 108
|||||||||||||
Sbjct: 246 ccagcttcgtccg 258
>MGNS002DF05F.B mgns002dF05f.b LENGTH:276bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 276
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 400 tctgacttccatc 412
|||||||||||||
Sbjct: 134 tctgacttccatc 146
>MGNS002DA02F.B mgns002dA02f.b LENGTH:373bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 373
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 386 cccgagggcaagc 398
|||||||||||||
Sbjct: 330 cccgagggcaagc 342
>MGNS002CG05F.B mgns002cG05f.b LENGTH:424bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 424
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 371 ggcggtggtggtg 383
|||||||||||||
Sbjct: 248 ggcggtggtggtg 260
>MGNS001DE02F.B mgns001dE02f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 418
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 328 caaccactccctc 340
|||||||||||||
Sbjct: 145 caaccactccctc 157
>CL79CT88CN92 cl79ct88cn92 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:1;
ESTS:mgns007bD02f.b; LENGTH:
Length = 447
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 371 ggcggtggtggtg 383
|||||||||||||
Sbjct: 318 ggcggtggtggtg 306
>CL212CT223CN229 cl212ct223cn229 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns007cF04f.b,mgns
Length = 400
Score = 26.3 bits (13), Expect = 2.9
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 205 ccagacctacgttaccg 221
|||||||||||| ||||
Sbjct: 242 ccagacctacgtcaccg 258
>CL132CT143CN148 cl132ct143cn148 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002bG07f.b,mgns
Length = 463
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 385 gcccgagggcaag 397
|||||||||||||
Sbjct: 371 gcccgagggcaag 383
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 223
Number of Sequences: 1206
Number of extensions: 223
Number of successful extensions: 72
Number of sequences better than 10.0: 26
length of query: 498
length of database: 496,015
effective HSP length: 13
effective length of query: 485
effective length of database: 480,337
effective search space: 232963445
effective search space used: 232963445
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)