The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_E09.seq Fgr_10_E09 LENGTH:596bp ; DIRECTION:5
; CLONE:Fgr_10_E09 ; CLONELIB: n/a ; TISSU
(596 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB68403.1| (AB071859) stomatin-like protein [Gibberell... 230 8e-60
ref|NP_343577.1| (NC_002754) Erythrocyte band 7 membrane pr... 41 0.009
ref|NP_127238.1| (NC_000868) STOMATIN-LIKE PROTEIN [Pyrococ... 40 0.019
ref|NP_275835.1| (NC_000916) stomatin-like protein [Methano... 38 0.074
gb|AAB63364.1| (U97360) HFLK homolog [Treponema pallidum] 38 0.074
ref|NP_218553.1| (NC_000919) Lambda CII stability-governing... 38 0.074
ref|NP_142449.1| (NC_000961) membrane protein [Pyrococcus h... 37 0.096
ref|NP_249143.1| (NC_002516) probable stomatin-like protein... 37 0.16
ref|NP_228675.1| (NC_000853) conserved hypothetical protein... 36 0.28
ref|NP_566135.1| (NM_110995) expressed protein [Arabidopsis... 36 0.28
ref|NP_276886.1| (NC_000916) stomatin-like protein [Methano... 35 0.62
ref|NP_199970.1| (NM_124536) putative protein [Arabidopsis ... 34 0.82
ref|NP_498104.1| (NM_065703) ZC155.3.p [Caenorhabditis eleg... 34 0.82
ref|NP_518923.1| (NC_003295) PUTATIVE STOMATIN-LIKE TRANSME... 34 0.82
ref|NP_295866.1| (NC_001263) conserved hypothetical protein... 34 0.82
ref|NP_148418.1| (NC_000854) erythrocyte band 7 integral me... 34 1.1
ref|NP_290804.1| (NC_002655) protease specific for phage la... 34 1.1
ref|NP_558821.1| (NC_003364) conserved protein (band 7 homo... 33 1.4
ref|NP_486512.1| (NC_003272) hypothetical protein [Nostoc s... 33 1.4
ref|NP_065380.1| (NC_002525) 77 pct identical to sp:YBBK_EC... 33 1.4
ref|NP_279419.1| (NC_002607) bifunctional short chain isopr... 33 1.8
ref|NP_356850.1| (NC_003063) AGR_L_2127p [Agrobacterium tum... 33 2.4
ref|XP_101311.1| (XM_101311) hypothetical protein XP_101311... 33 2.4
ref|NP_230623.1| (NC_002505) conserved hypothetical protein... 33 2.4
ref|NP_458799.1| (NC_003198) HflK protein [Salmonella enter... 33 2.4
ref|NP_463224.1| (NC_003197) with HflC, part of modulator f... 33 2.4
ref|NP_103398.1| (NC_002678) probable stomatin [Mesorhizobi... 32 3.1
ref|NP_378205.1| (NC_003106) 260aa long hypothetical erythr... 32 3.1
gb|AAC69938.1| (AC005700) putative ligand-gated ion channel... 32 3.1
ref|NP_602376.1| (NC_003454) Stomatin like protein [Fusobac... 32 3.1
ref|NP_286238.1| (NC_002655) putative protease [Escherichia... 32 3.1
ref|NP_459496.1| (NC_003197) putative inner membrane protei... 32 3.1
ref|NP_455096.1| (NC_003198) putative membrane protein [Sal... 32 3.1
ref|NP_565744.1| (NM_128799) putative ligand-gated ion chan... 32 3.1
pir||T51136 ionotropic glutamate receptor glr5 [imported] -... 32 3.1
ref|NP_070249.1| (NC_000917) membrane protein [Archaeoglobu... 32 3.1
gb|AAL75999.1|AF466646_7 (AF466646) putative polyprotein [Z... 32 3.1
ref|NP_492517.1| (NM_060116) erythrocyte band 7 integral me... 32 4.0
ref|NP_213619.1| (NC_000918) erythrocyte band 7 homolog [Aq... 32 4.0
ref|NP_437654.1| (NC_003078) putative stomatin-like protein... 32 4.0
gb|AAL67572.1|AF461430_3 (AF461430) putative transmembrane ... 32 5.3
ref|NP_386910.1| (NC_003047) HYPOTHETICAL TRANSMEMBRANE PRO... 32 5.3
sp|P40606|HFLC_VIBPA HFLC PROTEIN >gi|507735|gb|AAA62187.1|... 32 5.3
ref|NP_406573.1| (NC_003143) conserved hypothetical protein... 32 5.3
ref|NP_488427.1| (NC_003272) hypothetical protein [Nostoc s... 31 6.9
dbj|BAB85034.1| (AK074268) unnamed protein product [Homo sa... 31 6.9
gb|AAF55676.2| (AE003726) CG7240 gene product [Drosophila m... 31 6.9
ref|NP_044447.1| (NC_001793) replicase-associated polyprote... 31 6.9
gb|AAK15257.1| (AF300294) dystrophin-like protein DLP186 [D... 31 6.9
sp|Q92154|SMP_COTJA SCHWANN CELL MYELIN PROTEIN PRECURSOR >... 31 6.9
dbj|BAB18290.1| (AP002860) putative reductase [Oryza sativa... 31 9.0
ref|NP_012391.1| (NC_001142) Hypothetical ORF; Yjl144wp [Sa... 31 9.0
dbj|BAB23721.1| (AK004986) data source:MGD, source key:MGI:... 31 9.0
ref|NP_476538.1| (NM_057190) nasal embryonic LHRH factor; J... 31 9.0
ref|NP_064672.2| (NM_020276) nasal embryonic LHRH factor [M... 31 9.0
emb|CAC27332.1| (AJ278902) Jacob protein [Mus musculus] 31 9.0
emb|CAC20867.1| (AJ293698) Jacob protein, alternatively spl... 31 9.0
ref|NP_296241.1| (NC_001263) conserved hypothetical protein... 31 9.0
emb|CAC20868.1| (AJ293699) Jacob protein, alternatively spl... 31 9.0
ref|NP_072733.1| (NC_000908) cation-transporting P-type ATP... 31 9.0
>dbj|BAB68403.1| (AB071859) stomatin-like protein [Gibberella fujikuroi]
Length = 356
Score = 230 bits (586), Expect = 8e-60
Identities = 112/157 (71%), Positives = 125/157 (79%)
Frame = +3
Query: 126 MSSTEGMINGGSSTANSKAPAPAYDPXXXXXXXXXXXXGNGGFISQNKMTVVPPKKEDLQ 305
MSSTEGMINGG S++ + AP + GNGGF++Q+KM V PPKKEDLQ
Sbjct: 1 MSSTEGMINGGGSSSANPTKAPVME-------------GNGGFMAQHKMAVEPPKKEDLQ 47
Query: 306 RKYATVVEQEAGDNDWYGGMMNVLGGIVGTMGAIPCCIICPNPYKEVHQGNVGLVTKFGK 485
R YATVVE +A WYG MMN LG I+GTMGA+PCCIICPNP+KEV+QGNVGLVTKFGK
Sbjct: 48 RSYATVVENDANPKGWYGSMMNALGTIIGTMGAVPCCIICPNPFKEVNQGNVGLVTKFGK 107
Query: 486 FYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQICM 596
FYKAVDPGLV INPLSERL+QIDVKIQTTEVPEQICM
Sbjct: 108 FYKAVDPGLVNINPLSERLIQIDVKIQTTEVPEQICM 144
>ref|NP_343577.1| (NC_002754) Erythrocyte band 7 membrane protein homolog [Sulfolobus
solfataricus]
gb|AAK42367.1| (AE006825) Erythrocyte band 7 membrane protein homolog [Sulfolobus
solfataricus]
Length = 267
Score = 40.8 bits (94), Expect = 0.009
Identities = 22/72 (30%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
Frame = +3
Query: 375 LGGIVGTMGAIPCCII-CPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQI 551
+G IVG + I II ++ V + +V + G+F + PG++ + P +R L +
Sbjct: 5 IGDIVGIVFLIIIIIIFIAMSFRVVREWERAVVLRLGRFLRVKGPGIIFLIPFVDRPLVV 64
Query: 552 DVKIQTTEVPEQ 587
D+++ T EVP Q
Sbjct: 65 DLRVNTVEVPPQ 76
>ref|NP_127238.1| (NC_000868) STOMATIN-LIKE PROTEIN [Pyrococcus abyssi]
pir||F75003 stomatin-like protein PAB1324 - Pyrococcus abyssi (strain Orsay)
emb|CAB50468.1| (AJ248288) STOMATIN-LIKE PROTEIN [Pyrococcus abyssi]
Length = 299
Score = 39.7 bits (91), Expect = 0.019
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +3
Query: 363 MMNVLGGIVGTMGAIPCCIICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL 542
MM GG+ + I I+ K + GLV + GKF + +DPG+ I P ER+
Sbjct: 1 MMISAGGVALIILGIFLLIMLLLSVKVIRPYQKGLVERLGKFNRLLDPGIHFIIPFMERV 60
Query: 543 LQIDVKIQTTEVPEQ 587
+D++ +VP Q
Sbjct: 61 KVVDLREHVIDVPPQ 75
>ref|NP_275835.1| (NC_000916) stomatin-like protein [Methanothermobacter
thermautotrophicus]
sp|O26788|Y692_METTH Hypothetical protein MTH692
pir||C69192 stomatin-like protein - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB85197.1| (AE000848) stomatin-like protein [Methanothermobacter
thermautotrophicus]
Length = 318
Score = 37.7 bits (86), Expect = 0.074
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 462 GLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
G+V + GK+ + V+ GLV I P E + ++D++ Q +VP Q
Sbjct: 28 GVVERLGKYQRTVESGLVVIIPFIEAIKKVDMREQVVDVPPQ 69
>gb|AAB63364.1| (U97360) HFLK homolog [Treponema pallidum]
Length = 220
Score = 37.7 bits (86), Expect = 0.074
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +3
Query: 351 WYGGMMNVLGGIVGTMGAIPCCII-CPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINP 527
W +V+ G +G G + I+ +P + + + G+VT+FGK+++ ++PGL + P
Sbjct: 6 WTPATWSVVAGCIG--GVLGIVIVGIASPIRIISPTDNGVVTRFGKYHRTLEPGLHYLIP 63
Query: 528 LSERLLQIDV-KIQTTE 575
E + ++ V K+Q E
Sbjct: 64 FVEWVYKVPVTKVQKEE 80
>ref|NP_218553.1| (NC_000919) Lambda CII stability-governing protein (hflK)
[Treponema pallidum]
sp|O83151|HFLK_TREPA HFLK protein
pir||H71364 probable Lambda CII stability-governing protein (hflK) - syphilis
spirochete
gb|AAC65102.1| (AE001196) Lambda CII stability-governing protein (hflK) [Treponema
pallidum]
Length = 328
Score = 37.7 bits (86), Expect = 0.074
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +3
Query: 351 WYGGMMNVLGGIVGTMGAIPCCII-CPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINP 527
W +V+ G +G G + I+ +P + + + G+VT+FGK+++ ++PGL + P
Sbjct: 6 WTPATWSVVAGCIG--GVLGIVIVGIASPIRIISPTDNGVVTRFGKYHRTLEPGLHYLIP 63
Query: 528 LSERLLQIDV-KIQTTE 575
E + ++ V K+Q E
Sbjct: 64 FVEWVYKVPVTKVQKEE 80
>ref|NP_142449.1| (NC_000961) membrane protein [Pyrococcus horikoshii]
pir||A71159 probable membrane protein - Pyrococcus horikoshii
dbj|BAA29558.1| (AP000002) 298aa long hypothetical membrane protein [Pyrococcus
horikoshii]
Length = 298
Score = 37.4 bits (85), Expect = 0.096
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 462 GLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
GLV + GKF + +DPG+ I P ER+ +D++ +VP Q
Sbjct: 37 GLVERLGKFNRLLDPGIHFIIPFMERVKIVDLREHVIDVPPQ 78
>ref|NP_249143.1| (NC_002516) probable stomatin-like protein [Pseudomonas aeruginosa]
pir||A83590 probable stomatin-like protein PA0452 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG03841.1|AE004482_8 (AE004482) probable stomatin-like protein [Pseudomonas aeruginosa]
Length = 264
Score = 36.6 bits (83), Expect = 0.16
Identities = 15/42 (35%), Positives = 28/42 (65%)
Frame = +3
Query: 462 GLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
G+V + G+F+K PGLV + P +++++ID++ +VP Q
Sbjct: 32 GVVFQLGRFWKVKGPGLVLVIPAIQQMVRIDLRTIVLDVPPQ 73
>ref|NP_228675.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||E72322 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35948.1|AE001753_4 (AE001753) conserved hypothetical protein [Thermotoga maritima]
Length = 305
Score = 35.8 bits (81), Expect = 0.28
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 462 GLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
GLV + GKF + V G+ I P ER++++D++ + +VP Q
Sbjct: 29 GLVERLGKFKREVGAGVHFIIPFFERMIKVDMREKVIDVPPQ 70
>ref|NP_566135.1| (NM_110995) expressed protein [Arabidopsis thaliana]
gb|AAF03497.1|AC010676_7 (AC010676) unknown protein [Arabidopsis thaliana]
gb|AAF26146.1|AC008261_3 (AC008261) unknown protein [Arabidopsis thaliana]
Length = 285
Score = 35.8 bits (81), Expect = 0.28
Identities = 22/67 (32%), Positives = 35/67 (51%), Gaps = 9/67 (13%)
Frame = +3
Query: 396 MGAIPCCIICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKI---------NPLSERLLQ 548
MG + CC++ V Q +V + +FGKF K ++PGL + L+ RL Q
Sbjct: 1 MGNLFCCVL-------VKQSDVAVKERFGKFQKVLNPGLQFVPWVIGDYVAGTLTLRLQQ 53
Query: 549 IDVKIQT 569
+DV+ +T
Sbjct: 54 LDVQCET 60
>ref|NP_276886.1| (NC_000916) stomatin-like protein [Methanothermobacter
thermautotrophicus]
pir||G69104 stomatin-like protein - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB86246.1| (AE000933) stomatin-like protein [Methanothermobacter
thermautotrophicus]
Length = 297
Score = 34.7 bits (78), Expect = 0.62
Identities = 21/66 (31%), Positives = 36/66 (53%)
Frame = +3
Query: 390 GTMGAIPCCIICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQT 569
G + A+ II + K V Q G+V + GK +PGL I P+ +R++++ ++I T
Sbjct: 50 GLLAAVIIVIISLS-LKIVKQYERGVVFRLGKVIGVREPGLRIIIPIIDRMVRVSLRIVT 108
Query: 570 TEVPEQ 587
+P Q
Sbjct: 109 MPIPSQ 114
>ref|NP_199970.1| (NM_124536) putative protein [Arabidopsis thaliana]
dbj|BAB08673.1| (AB018109) gb|AAF03497.1~gene_id:K17N15.12~similar to unknown
protein [Arabidopsis thaliana]
Length = 292
Score = 34.3 bits (77), Expect = 0.82
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Frame = +3
Query: 444 VHQGNVGLVTKFGKFYKAVDPGLVKINP---------LSERLLQIDVKIQT 569
+ Q +VG+V ++G+F +PG NP LS R+ +DVKI+T
Sbjct: 12 IEQASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKIET 62
>ref|NP_498104.1| (NM_065703) ZC155.3.p [Caenorhabditis elegans]
gb|AAD31935.1|U00064_7 (U00064) Hypothetical protein ZC155.3 [Caenorhabditis elegans]
Length = 845
Score = 34.3 bits (77), Expect = 0.82
Identities = 14/44 (31%), Positives = 26/44 (58%), Gaps = 3/44 (6%)
Frame = +2
Query: 461 WSCHQVWKVLQGCRSWSGQNQPSQRETSSDR---CQDSDHRGSR 583
W+ +WK+ Q CR+W ++P++ S+D C++ +H G R
Sbjct: 503 WTTCGIWKLCQMCRTWIKASRPNEIVGSNDDFFCCENVNHHGCR 546
>ref|NP_518923.1| (NC_003295) PUTATIVE STOMATIN-LIKE TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum]
emb|CAD14504.1| (AL646061) PUTATIVE STOMATIN-LIKE TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum]
Length = 249
Score = 34.3 bits (77), Expect = 0.82
Identities = 14/42 (33%), Positives = 27/42 (63%)
Frame = +3
Query: 462 GLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
G+V G+F++ PGLV I P ++++++D++ +VP Q
Sbjct: 32 GVVFLLGRFWRVKGPGLVLIVPAIQQMVRVDLRTIVMDVPPQ 73
>ref|NP_295866.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||D75311 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11687.1|AE002048_7 (AE002048) conserved hypothetical protein [Deinococcus radiodurans]
Length = 344
Score = 34.3 bits (77), Expect = 0.82
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL-LQIDVKIQTTEVPEQ 587
K V QGN +FGKF + + PGL I P +R+ ++++ Q +VP Q
Sbjct: 23 KSVPQGNEWTQERFGKFQRTLKPGLNLIIPYIDRIGRKVNMMEQVFDVPSQ 73
>ref|NP_148418.1| (NC_000854) erythrocyte band 7 integral membrane protein [Aeropyrum
pernix]
pir||D72522 probable erythrocyte band 7 integral membrane protein APE2153 -
Aeropyrum pernix (strain K1)
dbj|BAA81164.1| (AP000063) 278aa long hypothetical erythrocyte band 7 integral
membrane protein [Aeropyrum pernix]
Length = 278
Score = 33.9 bits (76), Expect = 1.1
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
K V + ++ + G+ PGL I P + L+++D++I T ++PEQ
Sbjct: 40 KIVREYERAVIFRLGRLIGVKGPGLFLIIPFVDTLVKVDLRIVTVDIPEQ 89
>ref|NP_290804.1| (NC_002655) protease specific for phage lambda cII repressor
[Escherichia coli O157:H7 EDL933]
ref|NP_313177.1| (NC_002695) protease specific for phage lambda cII repressor
[Escherichia coli O157:H7]
ref|NP_418595.1| (NC_000913) protease specific for phage lambda cII repressor
[Escherichia coli K12]
sp|P25662|HFLK_ECOLI HflK protein
pir||B43653 probable integral membrane proteinase (EC 3.4.-.-) hflK -
Escherichia coli
gb|AAC43399.1| (U00005) putative integral membrane protein required for high
frequency lysogenization by bacteriophage lambda
[Escherichia coli]
gb|AAA97070.1| (U14003) CG Site No. 639; alternate gene name hflA; putative
integral membrane protease required for high frequency
lysogenization by bacteriophage lambda [Escherichia
coli]
gb|AAC77131.1| (AE000489) protease specific for phage lambda cII repressor
[Escherichia coli K12]
gb|AAG59370.1|AE005650_9 (AE005650) protease specific for phage lambda cII repressor
[Escherichia coli O157:H7 EDL933]
dbj|BAB38573.1| (AP002568) protease specific for phage lambda cII repressor
[Escherichia coli O157:H7]
Length = 419
Score = 33.9 bits (76), Expect = 1.1
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = +3
Query: 282 PPKKEDLQRKYATVVE-------QEAGDNDWYGGMMNVLGGIVGTMGAIPCCII-CPNPY 437
PP +D+ RK + + +G G LGG V T+ A II + +
Sbjct: 38 PPDLDDIFRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGF 97
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGL 512
+ + G+VT+FGKF V+PGL
Sbjct: 98 YTIKEAERGVVTRFGKFSHLVEPGL 122
>ref|NP_558821.1| (NC_003364) conserved protein (band 7 homolog) [Pyrobaculum
aerophilum]
gb|AAL63003.1| (AE009783) conserved protein (band 7 homolog) [Pyrobaculum
aerophilum]
Length = 262
Score = 33.5 bits (75), Expect = 1.4
Identities = 14/38 (36%), Positives = 24/38 (62%)
Frame = +3
Query: 474 KFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
+ G+ V PGLV I P+ E +++ D++I+ +VP Q
Sbjct: 43 RLGRVVGVVGPGLVFIIPIIETIMRYDLRIEVVDVPAQ 80
>ref|NP_486512.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB74171.1| (AP003589) ORF_ID:alr2472~hypothetical protein [Nostoc sp. PCC
7120]
Length = 322
Score = 33.5 bits (75), Expect = 1.4
Identities = 15/54 (27%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQID-VKIQTTEVPEQICM 596
K ++QGN LV + G ++K + PGL + P ++ + + ++ + ++P Q C+
Sbjct: 22 KVINQGNEVLVERLGSYHKKLGPGLNLVLPFIDKAVYKETIREKVLDIPPQKCI 75
>ref|NP_065380.1| (NC_002525) 77 pct identical to sp:YBBK_ECOLI[hypothetical 33kd
protein of E. coli] [Escherichia coli]
dbj|BAB12673.1| (AP002527) 77 pct identical to sp:YBBK_ECOLI[hypothetical 33kd
protein of E. coli] [Escherichia coli]
Length = 325
Score = 33.5 bits (75), Expect = 1.4
Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 1/58 (1%)
Frame = +3
Query: 417 IICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQ-IDVKIQTTEVPEQ 587
I + K V QGN V +FGK+ + PGL + P +R+ Q I++ +VP+Q
Sbjct: 24 IFVKSAVKIVPQGNAWTVERFGKYTHTLSPGLHFLIPFMDRIGQRINMMETVLDVPKQ 81
>ref|NP_279419.1| (NC_002607) bifunctional short chain isoprenyl diphosphate
synthase; Ids [Halobacterium sp. NRC-1]
gb|AAG18899.1| (AE004992) bifunctional short chain isoprenyl diphosphate synthase;
Ids [Halobacterium sp. NRC-1]
Length = 392
Score = 33.1 bits (74), Expect = 1.8
Identities = 19/78 (24%), Positives = 36/78 (45%)
Frame = +3
Query: 354 YGGMMNVLGGIVGTMGAIPCCIICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLS 533
+GG + +VG + + ++ + V +T FG++ ++PG+ I P
Sbjct: 23 FGGSLTT---VVGLLLLVLLAVVVYETVQIVDAYEKQALTVFGEYRGLLEPGINVIPPFV 79
Query: 534 ERLLQIDVKIQTTEVPEQ 587
R D++ QT +VP Q
Sbjct: 80 SRTYTFDMRTQTIDVPRQ 97
>ref|NP_356850.1| (NC_003063) AGR_L_2127p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534266.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89635.1| (AE008306) AGR_L_2127p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44582.1| (AE009308) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 350
Score = 32.7 bits (73), Expect = 2.4
Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Frame = +3
Query: 363 MMNVLGG--IVGTMGAIPCCIICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSE 536
MM LGG IV + ++ K V QG+ V +FG++ + ++PGL I P E
Sbjct: 1 MMIALGGFDIVVIAAVVLVILVLFAGIKTVPQGHRYTVERFGRYTRTLEPGLNLIIPFFE 60
Query: 537 RL-LQIDVKIQTTEVPEQ 587
+ +++V Q +P Q
Sbjct: 61 SIGSKMNVMEQVLHIPTQ 78
>ref|XP_101311.1| (XM_101311) hypothetical protein XP_101311 [Homo sapiens]
Length = 748
Score = 32.7 bits (73), Expect = 2.4
Identities = 19/52 (36%), Positives = 26/52 (49%)
Frame = +2
Query: 434 LQGSPPGQRWSCHQVWKVLQGCRSWSGQNQPSQRETSSDRCQDSDHRGSRAD 589
L+ P Q W+ Q W+ G SG P +E + RC+ DHR +RAD
Sbjct: 70 LRPPAPEQVWTGPQCWRGEPG----SGHPPPQSQEEAWLRCRIWDHRAARAD 117
>ref|NP_230623.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||F82256 conserved hypothetical protein VC0976 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94138.1| (AE004179) conserved hypothetical protein [Vibrio cholerae]
Length = 306
Score = 32.7 bits (73), Expect = 2.4
Identities = 19/58 (32%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Frame = +3
Query: 417 IICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL-LQIDVKIQTTEVPEQ 587
I + K V QGN V +FG++ + + PGL I P +R+ +I++ Q ++P Q
Sbjct: 18 IFISSAVKTVPQGNNWTVERFGRYTQTLKPGLNLIIPFIDRVGHKINMMEQVLDIPAQ 75
>ref|NP_458799.1| (NC_003198) HflK protein [Salmonella enterica subsp. enterica
serovar Typhi]
emb|CAD06840.1| (AL627283) HflK protein [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 419
Score = 32.7 bits (73), Expect = 2.4
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Frame = +3
Query: 282 PPKKEDLQRKYATVV--------EQEAGDNDWYGGMMNVLGGIVGTMGAIPCCIICPNPY 437
PP +D+ RK + + G + G + G IV A I + +
Sbjct: 38 PPDLDDIFRKLSKKLGGFGGGKGTGSGGGSSSQGPRPQLGGRIVAIAAAAVVIIWAASGF 97
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGL 512
+ + G+VT+FGKF V+PGL
Sbjct: 98 YTIKEAERGVVTRFGKFSHLVEPGL 122
>ref|NP_463224.1| (NC_003197) with HflC, part of modulator for protease specific for
FtsH phage lambda cII repressor [Salmonella typhimurium
LT2]
gb|AAL23183.1| (AE008905) with HflC, part of modulator for protease specific for
FtsH phage lambda cII repressor [Salmonella typhimurium
LT2]
Length = 419
Score = 32.7 bits (73), Expect = 2.4
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Frame = +3
Query: 282 PPKKEDLQRKYATVV--------EQEAGDNDWYGGMMNVLGGIVGTMGAIPCCIICPNPY 437
PP +D+ RK + + G + G + G IV A I + +
Sbjct: 38 PPDLDDIFRKLSKKLGGFGGGKGTGSGGGSSSQGPRPQLGGRIVAIAAAAVVIIWAASGF 97
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGL 512
+ + G+VT+FGKF V+PGL
Sbjct: 98 YTIKEAERGVVTRFGKFSHLVEPGL 122
>ref|NP_103398.1| (NC_002678) probable stomatin [Mesorhizobium loti]
dbj|BAB49184.1| (AP002998) probable stomatin [Mesorhizobium loti]
Length = 254
Score = 32.3 bits (72), Expect = 3.1
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +3
Query: 462 GLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
G+V G+F PGL+ + P ++++++D+++ +VP Q
Sbjct: 32 GVVFTLGRFTGVKGPGLIILVPFVQQMVKVDLRVVVQDVPPQ 73
>ref|NP_378205.1| (NC_003106) 260aa long hypothetical erythrocyte band 7 integral
membrane protein [Sulfolobus tokodaii]
dbj|BAB67314.1| (AP000989) 260aa long hypothetical erythrocyte band 7 integral
membrane protein [Sulfolobus tokodaii]
Length = 260
Score = 32.3 bits (72), Expect = 3.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 435 YKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
++ V + +V + G+ PG++ + P +R L +D++I T EVP Q
Sbjct: 25 FRIVTEWQRAVVLRLGRVLGVKGPGIIFLIPFVDRPLLVDLRIVTVEVPPQ 75
>gb|AAC69938.1| (AC005700) putative ligand-gated ion channel subunit [Arabidopsis
thaliana]
Length = 923
Score = 32.3 bits (72), Expect = 3.1
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +3
Query: 243 NGGFISQNKMTVVPPKKEDLQRKYATVVEQEAGDNDWYGGMMNVLGGIVGTMGAIPCCII 422
NGGF +VV PK Q+K + V +++ GD W GG G V A P I+
Sbjct: 409 NGGF------SVVAPKTRHSQKKTSFVSDEKLGDITWPGGGREKPRGWVIADSADPLKIV 462
Query: 423 CP 428
P
Sbjct: 463 VP 464
>ref|NP_602376.1| (NC_003454) Stomatin like protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL93675.1| (AE010464) Stomatin like protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 294
Score = 32.3 bits (72), Expect = 3.1
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQI 551
K V + V +V K GK+Y+++ GL INP +R+ +I
Sbjct: 23 KIVPESQVYIVEKLGKYYQSLSSGLNLINPFFDRVARI 60
>ref|NP_286238.1| (NC_002655) putative protease [Escherichia coli O157:H7 EDL933]
ref|NP_308579.1| (NC_002695) putative protease [Escherichia coli O157:H7]
ref|NP_415022.1| (NC_000913) putative protease [Escherichia coli K12]
sp|P77367|YBBK_ECOLI Hypothetical protein ybbK
pir||H64779 probable membrane protein ybbK - Escherichia coli
gb|AAB40243.1| (U82664) similar to M. tuberculosis MTCY277.09 [Escherichia coli]
gb|AAC73591.1| (AE000155) putative protease [Escherichia coli K12]
gb|AAG54846.1|AE005230_6 (AE005230) putative protease [Escherichia coli O157:H7 EDL933]
dbj|BAB33975.1| (AP002552) putative protease [Escherichia coli O157:H7]
Length = 305
Score = 32.3 bits (72), Expect = 3.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL-LQIDVKIQTTEVPEQ 587
K V QG V +FG++ K + PGL + P +R+ +I++ Q ++P Q
Sbjct: 21 KIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQ 71
>ref|NP_459496.1| (NC_003197) putative inner membrane protein [Salmonella typhimurium
LT2]
gb|AAL19455.1| (AE008719) putative inner membrane protein [Salmonella typhimurium
LT2]
Length = 305
Score = 32.3 bits (72), Expect = 3.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL-LQIDVKIQTTEVPEQ 587
K V QG V +FG++ K + PGL + P +R+ +I++ Q ++P Q
Sbjct: 21 KIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQ 71
>ref|NP_455096.1| (NC_003198) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD04986.1| (AL627267) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 305
Score = 32.3 bits (72), Expect = 3.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL-LQIDVKIQTTEVPEQ 587
K V QG V +FG++ K + PGL + P +R+ +I++ Q ++P Q
Sbjct: 21 KIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQ 71
>ref|NP_565744.1| (NM_128799) putative ligand-gated ion channel subunit [Arabidopsis
thaliana]
Length = 921
Score = 32.3 bits (72), Expect = 3.1
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +3
Query: 243 NGGFISQNKMTVVPPKKEDLQRKYATVVEQEAGDNDWYGGMMNVLGGIVGTMGAIPCCII 422
NGGF +VV PK Q+K + V +++ GD W GG G V A P I+
Sbjct: 409 NGGF------SVVAPKTRHSQKKTSFVSDEKLGDITWPGGGREKPRGWVIADSADPLKIV 462
Query: 423 CP 428
P
Sbjct: 463 VP 464
>pir||T51136 ionotropic glutamate receptor glr5 [imported] - Arabidopsis
thaliana
gb|AAF21042.1|AF210701_1 (AF210701) Glr5 [Arabidopsis thaliana]
Length = 921
Score = 32.3 bits (72), Expect = 3.1
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +3
Query: 243 NGGFISQNKMTVVPPKKEDLQRKYATVVEQEAGDNDWYGGMMNVLGGIVGTMGAIPCCII 422
NGGF +VV PK Q+K + V +++ GD W GG G V A P I+
Sbjct: 409 NGGF------SVVAPKTRHSQKKTSFVSDEKLGDITWPGGGREKPRGWVIADSADPLKIV 462
Query: 423 CP 428
P
Sbjct: 463 VP 464
>ref|NP_070249.1| (NC_000917) membrane protein [Archaeoglobus fulgidus]
sp|O28852|YE20_ARCFU Hypothetical protein AF1420
pir||C69427 membrane protein homolog - Archaeoglobus fulgidus
gb|AAB89829.1| (AE001006) membrane protein [Archaeoglobus fulgidus]
Length = 249
Score = 32.3 bits (72), Expect = 3.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 462 GLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
G++ + G+ A PGL I P+ E ++ +D++ T +VP Q
Sbjct: 29 GVIFRLGRLVGARGPGLFFIIPILENMVVVDLRTVTYDVPSQ 70
>gb|AAL75999.1|AF466646_7 (AF466646) putative polyprotein [Zea mays]
Length = 2749
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = +1
Query: 328 NRRPVXXXXXXXXXXFSEVSSEPWALFPAASSVPTLTRKSTRATLVLSPSLESST 492
N RP+ S++SS+P A P++ S P+L++ S L PS ST
Sbjct: 232 NLRPIRGRDRIPINLVSDMSSDPSAPLPSSPSAPSLSQASASLPLAAVPSTVPST 286
>ref|NP_492517.1| (NM_060116) erythrocyte band 7 integral membrane protein like
[Caenorhabditis elegans]
pir||T21562 hypothetical protein F30A10.5 - Caenorhabditis elegans
emb|CAB03018.1| (Z81072) predicted using Genefinder~Similarity to Human erythrocyte
band 7 integral membrane protein (SW:BAN7_HUMAN),
contains similarity to Pfam domain: PF01145 (SPFH domain
/ Band 7 family), Score=170.0, E-value=1.3e-47, N=1~cDNA
EST yk543b6.3 comes >
Length = 334
Score = 32.0 bits (71), Expect = 4.0
Identities = 16/49 (32%), Positives = 30/49 (60%), Gaps = 1/49 (2%)
Frame = +3
Query: 444 VHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQI-DVKIQTTEVPEQ 587
V Q +V + GKFYK ++PGL + P+ +++ + +++ E+PEQ
Sbjct: 48 VPQQEAWVVERMGKFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQ 96
>ref|NP_213619.1| (NC_000918) erythrocyte band 7 homolog [Aquifex aeolicus]
pir||F70378 erythrocyte band 7 homolog - Aquifex aeolicus
gb|AAC07014.1| (AE000713) erythrocyte band 7 homolog [Aquifex aeolicus]
Length = 253
Score = 32.0 bits (71), Expect = 4.0
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +3
Query: 402 AIPCCIICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVP 581
AI + + K + + +V + G+ A PGL+ + P+ +R++++ ++ T +VP
Sbjct: 12 AILVLLFLASAIKVIPEYERAVVFRLGRVIGAKGPGLIIVIPIIDRIVRVSLRTVTLDVP 71
Query: 582 EQ 587
Q
Sbjct: 72 TQ 73
>ref|NP_437654.1| (NC_003078) putative stomatin-like protein [Sinorhizobium meliloti]
emb|CAC49514.1| (AL603646) putative stomatin-like protein [Sinorhizobium meliloti]
Length = 256
Score = 32.0 bits (71), Expect = 4.0
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +3
Query: 462 GLVTKFGKFYKAVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
G++ G+F PGL+ + P ++++++D++ + +VP Q
Sbjct: 34 GVIFTLGRFTGVKGPGLILLLPYVQQMVRVDLRTRVLDVPSQ 75
>gb|AAL67572.1|AF461430_3 (AF461430) putative transmembrane protein [Sinorhizobium meliloti]
Length = 212
Score = 31.6 bits (70), Expect = 5.3
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL-LQIDVKIQTTEVPEQ 587
K V QG V +FG++ + ++PGL I P +R+ ++ V Q +VP Q
Sbjct: 24 KTVPQGYRYTVERFGRYTRTMEPGLNLIVPFIDRIGSKLSVMEQVLDVPTQ 74
>ref|NP_386910.1| (NC_003047) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
emb|CAC47383.1| (AL591791) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
Length = 328
Score = 31.6 bits (70), Expect = 5.3
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL-LQIDVKIQTTEVPEQ 587
K V QG V +FG++ + ++PGL I P +R+ ++ V Q +VP Q
Sbjct: 24 KTVPQGYRYTVERFGRYTRTMEPGLNLIVPFIDRIGSKLSVMEQVLDVPTQ 74
>sp|P40606|HFLC_VIBPA HFLC PROTEIN
gb|AAA62187.1| (U09005) HflC [Vibrio parahaemolyticus]
Length = 326
Score = 31.6 bits (70), Expect = 5.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = +3
Query: 444 VHQGNVGLVTKFGKFYK-------AVDPGLVKINPLSERLLQIDVKIQTTE 575
+ +G G+V +FG+ K +PGL PL +R+ Q+D +IQT +
Sbjct: 23 IPEGERGIVVRFGRVLKDNNDITRIYEPGLHFKMPLFDRVKQLDARIQTMD 73
>ref|NP_406573.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92325.1| (AJ414155) conserved hypothetical protein [Yersinia pestis]
Length = 304
Score = 31.6 bits (70), Expect = 5.3
Identities = 19/58 (32%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Frame = +3
Query: 417 IICPNPYKEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERL-LQIDVKIQTTEVPEQ 587
I+ + K V QG V +FG++ K + PGL + P +R+ +I+V Q ++P Q
Sbjct: 14 IVVLSAIKIVPQGFQWTVERFGRYTKTLMPGLNIVVPFMDRVGRKINVMEQVLDIPSQ 71
>ref|NP_488427.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB76086.1| (AP003596) ORF_ID:all4387~hypothetical protein [Nostoc sp. PCC
7120]
Length = 278
Score = 31.2 bits (69), Expect = 6.9
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 438 KEVHQGNVGLVTKFGKFYKAVDPGLVKINPLSERLLQID 554
K +++GN LV + G+ ++ ++PGL I PL ++++ D
Sbjct: 20 KIINEGNAALVERLGRRHRTLNPGLNFIVPLVDQVVMED 58
>dbj|BAB85034.1| (AK074268) unnamed protein product [Homo sapiens]
Length = 274
Score = 31.2 bits (69), Expect = 6.9
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = +1
Query: 130 RPLRA*STAEAQPPTQRLPLPHMIPSTQPSIHMLPPKA 243
RP S A + PT L LPH+ ++ P+ H PP+A
Sbjct: 236 RPRSPASPAHSPTPTSALALPHLPVASCPAPHRSPPRA 273
>gb|AAF55676.2| (AE003726) CG7240 gene product [Drosophila melanogaster]
Length = 1629
Score = 31.2 bits (69), Expect = 6.9
Identities = 28/94 (29%), Positives = 41/94 (42%)
Frame = -2
Query: 418 MQQGIAPMVPTIPPRTFIMPPYQSLSPASCSTTVAYLRWRSSFLGGTTVILFWEMKPPLP 239
M G MVP +PP T PP PAS ++ A +SS L G + ++ KPP P
Sbjct: 108 MPDGQPMMVPGLPP-TMRQPPPLPRKPASTQSS-AQNSAQSSPLAG----MKFKDKPPPP 161
Query: 238 SVEAXXXXXXXXXSYAGAGAFELAVELPPLIMPS 137
+ + + FE+ PPL++ S
Sbjct: 162 PEKHSTLSAEGMAARRCSNPFEMPPPPPPLVLQS 195
>ref|NP_044447.1| (NC_001793) replicase-associated polyprotein [oat blue dwarf virus]
gb|AAC57874.1| (U87832) replicase-associated polyprotein [oat blue dwarf virus]
Length = 2066
Score = 31.2 bits (69), Expect = 6.9
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = +2
Query: 209 HNRAYTCFHRRQWRLHLPEQDDCCAPQEGRP 301
H+R +T FH R+WRL LP C P
Sbjct: 524 HDRYHTMFHPREWRLTLPRGPISCGRSSFSP 554
>gb|AAK15257.1| (AF300294) dystrophin-like protein DLP186 [Drosophila melanogaster]
Length = 1669
Score = 31.2 bits (69), Expect = 6.9
Identities = 28/94 (29%), Positives = 41/94 (42%)
Frame = -2
Query: 418 MQQGIAPMVPTIPPRTFIMPPYQSLSPASCSTTVAYLRWRSSFLGGTTVILFWEMKPPLP 239
M G MVP +PP T PP PAS ++ A +SS L G + ++ KPP P
Sbjct: 108 MPDGQPMMVPGLPP-TMRQPPPLPRKPASTQSS-AQNSAQSSPLAG----MKFKDKPPPP 161
Query: 238 SVEAXXXXXXXXXSYAGAGAFELAVELPPLIMPS 137
+ + + FE+ PPL++ S
Sbjct: 162 PEKHSTLSAEGMAARRCSNPFEMPPPPPPLVLQS 195
>sp|Q92154|SMP_COTJA SCHWANN CELL MYELIN PROTEIN PRECURSOR
pir||JH0593 Schwann cell myelin protein precursor - Japanese quail
gb|AAB21466.1| (S83711) Schwann cell myelin protein; SMP [Coturnix coturnix]
Length = 620
Score = 31.2 bits (69), Expect = 6.9
Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 5/57 (8%)
Frame = -2
Query: 259 EMKPPLPSVEAXXXXXXXXXSYAGAGAFELAVELPPLIMPSV-----DDMLNCVCCV 104
EM+P P A + +F ++VE PPL++P+ D + CVC V
Sbjct: 377 EMRPARPEDGGTYSCVAENQHGASSTSFNISVEYPPLVLPASRCTAGGDGVRCVCMV 433
>dbj|BAB18290.1| (AP002860) putative reductase [Oryza sativa (japonica
cultivar-group)]
Length = 337
Score = 30.8 bits (68), Expect = 9.0
Identities = 21/67 (31%), Positives = 31/67 (45%)
Frame = -1
Query: 515 DQTRIDSLVELSKLGDKTNVALVDFLVRVGTDDAAGNSAHGSDDTSENVHHASVPVVVTG 336
D+ ++ L EL ++ + D +V DDA G D V HA+ PVVV G
Sbjct: 37 DEAKVGFLWELDGASERLQLVKADLMVEGSFDDAV----RGVD----GVFHAASPVVVVG 88
Query: 335 LLFNNSG 315
+N+G
Sbjct: 89 NSSSNNG 95
>ref|NP_012391.1| (NC_001142) Hypothetical ORF; Yjl144wp [Saccharomyces cerevisiae]
sp|P47009|YJO4_YEAST HYPOTHETICAL 11.7 KD PROTEIN IN IDS2-MPI2 INTERGENIC REGION
pir||S55169 hypothetical protein YJL144w - yeast (Saccharomyces cerevisiae)
emb|CAA60811.1| (X87371) mitochondrial inner membrane protein 17, 5' region of INO1
[Saccharomyces cerevisiae]
emb|CAA89439.1| (Z49419) ORF YJL144w [Saccharomyces cerevisiae]
Length = 104
Score = 30.8 bits (68), Expect = 9.0
Identities = 20/67 (29%), Positives = 30/67 (43%), Gaps = 14/67 (20%)
Frame = -1
Query: 515 DQTRIDSLVELSKLGD------KTNVALVDFLVRV--------GTDDAAGNSAHGSDDTS 378
DQTR+DSLVE S +GD T ++ + V + + + N+ HG D+
Sbjct: 26 DQTRVDSLVEESPMGDFGINNQPTQPGVIYYFVELTNLGIQENTSSNNNNNNNHGDDENG 85
Query: 377 ENVHHAS 357
H S
Sbjct: 86 SRYGHGS 92
>dbj|BAB23721.1| (AK004986) data source:MGD, source key:MGI:1861755,
evidence:ISS~nasal embryonic LHRH factor~putative [Mus
musculus]
gb|AAH06642.1|AAH06642 (BC006642) nasal embryonic LHRH factor [Mus musculus]
Length = 530
Score = 30.8 bits (68), Expect = 9.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 416 HHLSQPLQGSPPGQRWSCHQVWKVLQGCRSWSGQNQPSQ 532
HH SQPL+ SP R + + C+SW+G Q S+
Sbjct: 135 HHHSQPLRASPGSSRED------ISRPCQSWAGSRQGSK 167
>ref|NP_476538.1| (NM_057190) nasal embryonic LHRH factor; Jacob protein [Rattus
norvegicus]
emb|CAC20866.1| (AJ293697) Jacob protein [Rattus norvegicus]
Length = 532
Score = 30.8 bits (68), Expect = 9.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 416 HHLSQPLQGSPPGQRWSCHQVWKVLQGCRSWSGQNQPSQ 532
HH SQPL+ SP R + + C+SW+G Q S+
Sbjct: 135 HHHSQPLRASPGSSRED------ISRPCQSWAGSRQGSK 167
>ref|NP_064672.2| (NM_020276) nasal embryonic LHRH factor [Mus musculus]
gb|AAF74501.2|AF266508_1 (AF266508) NELF protein [Mus musculus]
Length = 509
Score = 30.8 bits (68), Expect = 9.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 416 HHLSQPLQGSPPGQRWSCHQVWKVLQGCRSWSGQNQPSQ 532
HH SQPL+ SP R + + C+SW+G Q S+
Sbjct: 135 HHHSQPLRASPGSSRED------ISRPCQSWAGSRQGSK 167
>emb|CAC27332.1| (AJ278902) Jacob protein [Mus musculus]
Length = 532
Score = 30.8 bits (68), Expect = 9.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 416 HHLSQPLQGSPPGQRWSCHQVWKVLQGCRSWSGQNQPSQ 532
HH SQPL+ SP R + + C+SW+G Q S+
Sbjct: 135 HHHSQPLRASPGSSRED------ISRPCQSWAGSRQGSK 167
>emb|CAC20867.1| (AJ293698) Jacob protein, alternatively spliced isoform delta1
[Rattus norvegicus]
Length = 509
Score = 30.8 bits (68), Expect = 9.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 416 HHLSQPLQGSPPGQRWSCHQVWKVLQGCRSWSGQNQPSQ 532
HH SQPL+ SP R + + C+SW+G Q S+
Sbjct: 135 HHHSQPLRASPGSSRED------ISRPCQSWAGSRQGSK 167
>ref|NP_296241.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75264 hypothetical protein DR2521 - Deinococcus radiodurans (strain R1)
gb|AAF12059.1|AE002081_4 (AE002081) conserved hypothetical protein [Deinococcus radiodurans]
Length = 524
Score = 30.8 bits (68), Expect = 9.0
Identities = 20/53 (37%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Frame = +3
Query: 435 YKEVHQGNVGLVTKFGKFYK--AVDPGLVKINPLSERLLQIDVKIQTTEVPEQ 587
Y VH N L K++K DP V+I + ERL ID+ Q VPE+
Sbjct: 181 YVSVHTANQDLRQDMMKWWKLKVKDPQAVQIREMIERLESIDLYTQIVLVPER 233
>emb|CAC20868.1| (AJ293699) Jacob protein, alternatively spliced isoform delta2
[Rattus norvegicus]
Length = 479
Score = 30.8 bits (68), Expect = 9.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 416 HHLSQPLQGSPPGQRWSCHQVWKVLQGCRSWSGQNQPSQ 532
HH SQPL+ SP R + + C+SW+G Q S+
Sbjct: 135 HHHSQPLRASPGSSRED------ISRPCQSWAGSRQGSK 167
>ref|NP_072733.1| (NC_000908) cation-transporting P-type ATPase, putative [Mycoplasma
genitalium]
sp|P47317|ATCL_MYCGE Probable cation-transporting P-type ATPase
pir||H64207 probable cation-transporting ATPase (EC 3.6.1.-) - Mycoplasma
genitalium
gb|AAC71289.1| (U39687) cation-transporting P-type ATPase, putative [Mycoplasma
genitalium]
Length = 874
Score = 30.8 bits (68), Expect = 9.0
Identities = 13/31 (41%), Positives = 21/31 (66%)
Frame = +3
Query: 459 VGLVTKFGKFYKAVDPGLVKINPLSERLLQI 551
VG+ T+ GK K VD + K++PL ++L +I
Sbjct: 210 VGIKTQVGKIAKTVDDSVTKLSPLQQKLEKI 240
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 311,941,182
Number of Sequences: 907641
Number of extensions: 7011767
Number of successful extensions: 25210
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 23402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25158
length of database: 284,333,007
effective HSP length: 114
effective length of database: 180,861,933
effective search space used: 15192402372
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)