BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_10_E09.seq
(591 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS010AH03F.B mgns010aH03f.b LENGTH:518bp ; DIRECTION:0 ; CLONE... 30 0.22
MGNS008AD05F.B mgns008aD05f.b LENGTH:244bp ; DIRECTION:0 ; CLONE... 30 0.22
MGNS010CB06F.B mgns010cB06f.b LENGTH:338bp ; DIRECTION:0 ; CLONE... 28 0.87
MGNS001DH07F.B mgns001dH07f.b LENGTH:423bp ; DIRECTION:0 ; CLONE... 28 0.87
CL51CT58CN61 cl51ct58cn61 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3... 28 0.87
CL14CT15CN15 cl14ct15cn15 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6... 28 0.87
MGNS013DF01F.B mgns013dF01f.b LENGTH:427bp ; DIRECTION:0 ; CLONE... 26 3.4
MGNS010CG08F.B mgns010cG08f.b LENGTH:361bp ; DIRECTION:0 ; CLONE... 26 3.4
MGNS009CB11F.B mgns009cB11f.b LENGTH:436bp ; DIRECTION:0 ; CLONE... 26 3.4
MGNS007BG03F.B mgns007bG03f.b LENGTH:433bp ; DIRECTION:0 ; CLONE... 26 3.4
MGNS002BB06F.B mgns002bB06f.b LENGTH:355bp ; DIRECTION:0 ; CLONE... 26 3.4
MGNS002AB01F.B mgns002aB01f.b LENGTH:449bp ; DIRECTION:0 ; CLONE... 26 3.4
CL261CT273CN279 cl261ct273cn279 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.4
CL197CT208CN214 cl197ct208cn214 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.4
CL130CT141CN146 cl130ct141cn146 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 3.4
>MGNS010AH03F.B mgns010aH03f.b LENGTH:518bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 518
Score = 30.2 bits (15), Expect = 0.22
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 294 cctccagcgcaagta 308
|||||||||||||||
Sbjct: 441 cctccagcgcaagta 455
>MGNS008AD05F.B mgns008aD05f.b LENGTH:244bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 244
Score = 30.2 bits (15), Expect = 0.22
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 405 ctgctgcatcatctg 419
|||||||||||||||
Sbjct: 41 ctgctgcatcatctg 27
Score = 30.2 bits (15), Expect = 0.22
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 405 ctgctgcatcatctg 419
|||||||||||||||
Sbjct: 197 ctgctgcatcatctg 183
>MGNS010CB06F.B mgns010cB06f.b LENGTH:338bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 338
Score = 28.2 bits (14), Expect = 0.87
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 411 catcatctgtccca 424
||||||||||||||
Sbjct: 173 catcatctgtccca 160
>MGNS001DH07F.B mgns001dH07f.b LENGTH:423bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 423
Score = 28.2 bits (14), Expect = 0.87
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 463 gtcaccaagtttgg 476
||||||||||||||
Sbjct: 367 gtcaccaagtttgg 380
>CL51CT58CN61 cl51ct58cn61 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgns001bE05f.b,mgns001
Length = 528
Score = 28.2 bits (14), Expect = 0.87
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 564 caccgaggttccag 577
||||||||||||||
Sbjct: 486 caccgaggttccag 473
>CL14CT15CN15 cl14ct15cn15 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:mgns001aC01f.b,mgns002
Length = 691
Score = 28.2 bits (14), Expect = 0.87
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 atcagcaacaacca 65
||||||||||||||
Sbjct: 68 atcagcaacaacca 81
>MGNS013DF01F.B mgns013dF01f.b LENGTH:427bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 427
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 468 caagtttggaaag 480
|||||||||||||
Sbjct: 137 caagtttggaaag 149
>MGNS010CG08F.B mgns010cG08f.b LENGTH:361bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 361
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 383 tcggaaccatggg 395
|||||||||||||
Sbjct: 358 tcggaaccatggg 346
>MGNS009CB11F.B mgns009cB11f.b LENGTH:436bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 436
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 456 tggtcttgtcacc 468
|||||||||||||
Sbjct: 386 tggtcttgtcacc 374
>MGNS007BG03F.B mgns007bG03f.b LENGTH:433bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 433
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 99 aacacaacaaaca 111
|||||||||||||
Sbjct: 55 aacacaacaaaca 67
>MGNS002BB06F.B mgns002bB06f.b LENGTH:355bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 355
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 121 atgtcgtccactg 133
|||||||||||||
Sbjct: 291 atgtcgtccactg 303
>MGNS002AB01F.B mgns002aB01f.b LENGTH:449bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 449
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 20 tctgatcttctca 32
|||||||||||||
Sbjct: 94 tctgatcttctca 82
>CL261CT273CN279 cl261ct273cn279 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns010aF11f.b,mgns
Length = 558
Score = 26.3 bits (13), Expect = 3.4
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 98 aaacacaacaaacacaa 114
||||| |||||||||||
Sbjct: 529 aaacaaaacaaacacaa 545
>CL197CT208CN214 cl197ct208cn214 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007bB06f.b,mgns
Length = 835
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 21 ctgatcttctcag 33
|||||||||||||
Sbjct: 91 ctgatcttctcag 79
>CL130CT141CN146 cl130ct141cn146 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns002bF03f.b,mgns
Length = 1180
Score = 26.3 bits (13), Expect = 3.4
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 287 aggaagacctccagcgc 303
||||||||||| |||||
Sbjct: 684 aggaagacctcgagcgc 668
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 173
Number of Sequences: 1206
Number of extensions: 173
Number of successful extensions: 58
Number of sequences better than 10.0: 15
length of query: 591
length of database: 496,015
effective HSP length: 14
effective length of query: 577
effective length of database: 479,131
effective search space: 276458587
effective search space used: 276458587
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)