The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_E19.seq Fgr_10_E19 LENGTH:663bp ; DIRECTION:5
; CLONE:Fgr_10_E19 ; CLONELIB: n/a ; TISSU
(663 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_011294.1| (NC_001139) similar to Listeria monocytoge... 112 3e-24
ref|NP_588455.1| (NC_003421) similar to yeast ngg1-interact... 107 9e-23
ref|NP_075364.1| (NM_022988) Ngg1 interacting factor 3-like... 85 6e-16
dbj|BAB27769.1| (AK011670) data source:SPTR, source key:Q9E... 85 6e-16
ref|XP_027963.1| (XM_027963) NIF3 (Ngg1 interacting factor ... 84 1e-15
dbj|BAB14551.1| (AK023378) unnamed protein product [Homo sa... 84 1e-15
gb|AAF53525.1| (AE003650) CG4278 gene product [Drosophila m... 81 7e-15
ref|XP_079096.1| (XM_079096) CG4278 [Drosophila melanogaste... 81 7e-15
ref|NP_068596.1| (NM_021824) NIF3 (Ngg1 interacting factor ... 77 1e-13
emb|CAB72937.1| (AJ243321) hypothetical protein [Lactobacil... 70 1e-11
ref|NP_601440.1| (NC_003450) COG0327:Uncharacterized ACR [C... 70 2e-11
ref|NP_267229.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococ... 70 2e-11
ref|NP_604213.1| (NC_003454) NGG1-interacting factor 3 [Fus... 67 2e-10
ref|NP_470825.1| (NC_003212) conserved hypothetical protein... 66 2e-10
ref|NP_464977.1| (NC_003210) conserved hypothetical protein... 65 4e-10
ref|NP_269125.1| (NC_002737) conserved hypothetical protein... 63 3e-09
dbj|BAA12492.1| (D84432) YqfO [Bacillus subtilis] 63 3e-09
ref|NP_390396.1| (NC_000964) similar to hypothetical protei... 63 3e-09
ref|NP_347934.1| (NC_003030) Uncharacterized protein of Ybg... 62 4e-09
ref|NP_562920.1| (NC_003366) conserved hypothetical protein... 62 6e-09
ref|NP_585938.1| (NC_003234) similarity to NGG1-INTERACTING... 62 6e-09
ref|NP_372083.1| (NC_002758) conserved hypothetical protein... 61 1e-08
ref|NP_359055.1| (NC_003098) Conserved hypothetical protein... 59 5e-08
ref|NP_346053.1| (NC_003028) conserved hypothetical protein... 58 8e-08
dbj|BAA11246.1| (D78182) ORF4 [Streptococcus mutans] 54 2e-06
ref|NP_216746.1| (NC_000962) hypothetical protein Rv2230c [... 53 3e-06
emb|CAB88179.1| (AL352972) hypothetical protein SCC30.09c [... 52 4e-06
ref|NP_242246.1| (NC_002570) BH1380~unknown conserved prote... 52 4e-06
ref|NP_302129.1| (NC_002677) conserved hypothetical protein... 51 8e-06
ref|NP_326287.1| (NC_002771) conserved hypothetical protein... 51 1e-05
ref|NP_281877.1| (NC_002163) hypothetical protein Cj0705 [C... 45 6e-04
ref|NP_487256.1| (NC_003272) hypothetical protein [Nostoc s... 44 0.001
ref|NP_247922.1| (NC_000909) conserved hypothetical protein... 42 0.006
ref|NP_078185.1| (NC_002162) conserved hypothetical [Ureapl... 37 0.15
ref|NP_280510.1| (NC_002607) Vng1766c [Halobacterium sp. NR... 33 1.7
sp|Q02357|ANK1_MOUSE Ankyrin 1 (Erythrocyte ankyrin) >gi|21... 33 2.9
ref|NP_051831.1| (NC_001132) m117L [Myxoma virus] >gi|65239... 32 5.0
ref|NP_078319.1| (NC_002162) unique hypothetical [Ureaplasm... 32 5.0
ref|NP_461226.1| (NC_003197) sn-glycerol-3-phosphate dehydr... 31 8.5
ref|NP_456827.1| (NC_003198) anaerobic glycerol-3-phosphate... 31 8.5
>ref|NP_011294.1| (NC_001139) similar to Listeria monocytogenes major sigma factor
(rpoD gene product); Nif3p [Saccharomyces cerevisiae]
sp|P53081|NIF3_YEAST NGG1-interacting factor 3
pir||S64243 hypothetical protein YGL221c - yeast (Saccharomyces cerevisiae)
emb|CAA96937.1| (Z72743) ORF YGL221c [Saccharomyces cerevisiae]
Length = 288
Score = 112 bits (280), Expect = 3e-24
Identities = 60/138 (43%), Positives = 86/138 (61%), Gaps = 6/138 (4%)
Frame = +2
Query: 257 VVASIQKLYPEEIADRSWDNVGLLVGNSEE-----DTKKKKRVLVTNDLTYQVAMDAIEQ 421
+V SI K YP++ AD+SWDN GLL+ S D K +VL+T DLT VA +A++
Sbjct: 13 LVRSITKFYPQKYADKSWDNTGLLIDCSTAQVTTADANAKTKVLLTVDLTKSVAQEAVDA 72
Query: 422 DVSVIVSYHPFIFGGPKSIT-NNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLAD 598
+ +VIV+YHPFIF ++ + +PQ T +KL + G++VYCPHTAVDAA G+N WL
Sbjct: 73 NCNVIVAYHPFIFPSWNRLSPHTNPQHETAIKLIQYGISVYCPHTAVDAARGGVNDWLVR 132
Query: 599 IVSGPHESXRSVANPAVN 652
++ +S A V+
Sbjct: 133 GLNNGENVAKSYALETVS 150
>ref|NP_588455.1| (NC_003421) similar to yeast ngg1-interacting factor 3
[Schizosaccharomyces pombe]
pir||T40916 ngg1-interacting factor 3 homolog - fission yeast
(Schizosaccharomyces pombe)
emb|CAA22481.1| (AL034490) similar to yeast ngg1-interacting factor 3
[Schizosaccharomyces pombe]
Length = 278
Score = 107 bits (267), Expect = 9e-23
Identities = 69/140 (49%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Frame = +2
Query: 239 SSFTKAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIE 418
SS K VV SI Y ++AD SWDN GLL+ T VL+T DLT +VA +AI
Sbjct: 7 SSKLKKVVESI---YNPKLAD-SWDNTGLLLEAPFPRTNASS-VLLTIDLTEKVAEEAIS 61
Query: 419 QD-VSVIVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
VS IV+YHP IF G K+IT DPQQ +LLKL G+ VY PHTAVDAA +G+N WLA
Sbjct: 62 NKLVSSIVAYHPIIFRGLKAITMEDPQQRSLLKLAAEGIHVYSPHTAVDAAVDGVNDWLA 121
Query: 596 DIVSGPHESXRSVANPAVNA 655
++G + +SV N+
Sbjct: 122 QGIAGGRNNIKSVVPTQQNS 141
>ref|NP_075364.1| (NM_022988) Ngg1 interacting factor 3-like 1 (S. pombe); Ngg1
interacting factor 3 homolog (S. pombe)-like 1 [Mus
musculus]
gb|AAG45961.1|AF284439_1 (AF284439) NIF3L1 [Mus musculus]
Length = 376
Score = 84.7 bits (208), Expect = 6e-16
Identities = 48/115 (41%), Positives = 71/115 (61%)
Frame = +2
Query: 251 KAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVS 430
KA+++S+ A+ SWDNVGLLV S T + +TNDLT +V +A+++
Sbjct: 30 KALLSSLNDFASLSFAE-SWDNVGLLVEPSPPHTVNT--LFLTNDLTEEVMDEALQKKAD 86
Query: 431 VIVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
I+SYHP IF K IT ++ +++ + +AVY PHTA DAAP+G+N+WLA
Sbjct: 87 FILSYHPPIFRPMKHITWKTWKECLVIRALENRVAVYSPHTAYDAAPQGVNSWLA 141
>dbj|BAB27769.1| (AK011670) data source:SPTR, source key:Q9EQ80,
evidence:ISS~putative~similar to NIF3L1 [Mus musculus]
Length = 376
Score = 84.7 bits (208), Expect = 6e-16
Identities = 48/115 (41%), Positives = 71/115 (61%)
Frame = +2
Query: 251 KAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVS 430
KA+++S+ A+ SWDNVGLLV S T + +TNDLT +V +A+++
Sbjct: 30 KALLSSLNDFASLSFAE-SWDNVGLLVEPSPPHTVNT--LFLTNDLTEEVMDEALQKKAD 86
Query: 431 VIVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
I+SYHP IF K IT ++ +++ + +AVY PHTA DAAP+G+N+WLA
Sbjct: 87 FILSYHPPIFRPMKHITWKTWKECLVIRALENRVAVYSPHTAYDAAPQGVNSWLA 141
>ref|XP_027963.1| (XM_027963) NIF3 (Ngg1 interacting factor 3, S.pombe homolog)-like
1 [Homo sapiens]
gb|AAG44846.1|AF283538_1 (AF283538) NIF3L1 protein [Homo sapiens]
gb|AAH07654.1|AAH07654 (BC007654) Similar to NIF3 (Ngg1 interacting factor 3, S.pombe
homolog)-like 1 [Homo sapiens]
Length = 377
Score = 84.0 bits (206), Expect = 1e-15
Identities = 46/115 (40%), Positives = 70/115 (60%)
Frame = +2
Query: 251 KAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVS 430
KA+++S+ A+ SWDNVGLLV S T + +TNDLT +V + +++
Sbjct: 31 KALLSSLNDFASLSFAE-SWDNVGLLVEPSPPHTVNT--LFLTNDLTEEVMEEVLQKKAD 87
Query: 431 VIVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
+I+SYHP IF K IT N ++ +++ + + +Y PHTA DAAP+G+N WLA
Sbjct: 88 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLA 142
>dbj|BAB14551.1| (AK023378) unnamed protein product [Homo sapiens]
gb|AAG43131.1|AF060513_1 (AF060513) My018 protein [Homo sapiens]
dbj|BAB32499.1| (AB038949) amyotrophic lateral sclerosis 2 [Homo sapiens]
Length = 350
Score = 84.0 bits (206), Expect = 1e-15
Identities = 46/115 (40%), Positives = 70/115 (60%)
Frame = +2
Query: 251 KAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVS 430
KA+++S+ A+ SWDNVGLLV S T + +TNDLT +V + +++
Sbjct: 4 KALLSSLNDFASLSFAE-SWDNVGLLVEPSPPHTVNT--LFLTNDLTEEVMEEVLQKKAD 60
Query: 431 VIVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
+I+SYHP IF K IT N ++ +++ + + +Y PHTA DAAP+G+N WLA
Sbjct: 61 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLA 115
>gb|AAF53525.1| (AE003650) CG4278 gene product [Drosophila melanogaster]
Length = 288
Score = 81.3 bits (199), Expect = 7e-15
Identities = 45/118 (38%), Positives = 69/118 (58%)
Frame = +2
Query: 254 AVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSV 433
AVV ++ P A++ WDNVGLL+ E K+ K++L+TNDLT V +A+E++ +
Sbjct: 11 AVVKELENFAPTSWAEK-WDNVGLLIEPHRE--KQIKKILLTNDLTEPVVKEALEKEAEL 67
Query: 434 IVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIVS 607
I+SYHP IF IT + ++ + +A+Y PHTA D G+N WL+ V+
Sbjct: 68 IISYHPPIFKPLTRITQSHWKERVVAACLANDIALYSPHTAWDKKSGGVNDWLSKAVN 125
>ref|XP_079096.1| (XM_079096) CG4278 [Drosophila melanogaster]
sp|Q9NK57|A36A_DROME ANON-35F/36A PROTEIN
gb|AAF45006.1|AE003406_211 (AE003416) symbol=anon-35F/36A; synonym=BG:DS02740.16;
cDNA=method:''sim4'', score:''1000.0'',
desc:''anon-35F/36A Drosophila melanogaster embryo cDNA
clone, full length mRNA sequence from BDGP (Ling Hong &
Damon Harvey, unpublished)''; match=method:''>
gb|AAL39701.1| (AY069556) LD28566p [Drosophila melanogaster]
Length = 292
Score = 81.3 bits (199), Expect = 7e-15
Identities = 45/118 (38%), Positives = 69/118 (58%)
Frame = +2
Query: 254 AVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSV 433
AVV ++ P A++ WDNVGLL+ E K+ K++L+TNDLT V +A+E++ +
Sbjct: 15 AVVKELENFAPTSWAEK-WDNVGLLIEPHRE--KQIKKILLTNDLTEPVVKEALEKEAEL 71
Query: 434 IVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIVS 607
I+SYHP IF IT + ++ + +A+Y PHTA D G+N WL+ V+
Sbjct: 72 IISYHPPIFKPLTRITQSHWKERVVAACLANDIALYSPHTAWDKKSGGVNDWLSKAVN 129
>ref|NP_068596.1| (NM_021824) NIF3 (Ngg1 interacting factor 3, S.pombe homolog)-like
1; amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 1 [Homo sapiens]
gb|AAG14952.1|AF182416_1 (AF182416) MDS015 [Homo sapiens]
Length = 351
Score = 77.0 bits (188), Expect = 1e-13
Identities = 44/116 (37%), Positives = 69/116 (58%), Gaps = 1/116 (0%)
Frame = +2
Query: 251 KAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVS 430
KA+++S+ A+ SWDNVGLLV S T + +TNDLT +V + +++
Sbjct: 4 KALLSSLNDFASLSFAE-SWDNVGLLVEPSPPHTVNT--LFLTNDLTEEVMEEVLQKKAD 60
Query: 431 VIVSYHPFIFGGPKSIT-NNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
+I+SYHP IF K I + ++ +++ + + +Y PHTA DAAP+G+N WLA
Sbjct: 61 LILSYHPPIFRPMKRINLEHMGRERLVIRALENRVGIYSPHTAYDAAPQGVNNWLA 116
>emb|CAB72937.1| (AJ243321) hypothetical protein [Lactobacillus helveticus]
Length = 265
Score = 70.5 bits (171), Expect = 1e-11
Identities = 41/116 (35%), Positives = 66/116 (56%)
Frame = +2
Query: 251 KAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVS 430
K +V +++ +PE+IA + D VG+ +G+ E D K V+ T D+ QV +A+E+ V+
Sbjct: 5 KDIVNRLREDFPEDIASKG-DPVGMQIGSMEADVTK---VMTTLDVRPQVVEEAVEKGVN 60
Query: 431 VIVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLAD 598
IVS+HP +F +++ D Q A + K G+ VY HT D A +G W A+
Sbjct: 61 FIVSHHPVMFRPARNLDFADAQNAMYGNIIKNGITVYSIHTNSDKAQDGSADWQAE 116
>ref|NP_601440.1| (NC_003450) COG0327:Uncharacterized ACR [Corynebacterium
glutamicum]
Length = 380
Score = 69.7 bits (169), Expect = 2e-11
Identities = 36/112 (32%), Positives = 65/112 (57%)
Frame = +2
Query: 269 IQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYH 448
+ + YP +A+ SWD VGL+ G + T+ KRV + D T VA A++ + +++ +H
Sbjct: 13 LDEAYPPALAE-SWDKVGLICG---DPTESVKRVGLALDCTQAVADKAVDMGLDMLIIHH 68
Query: 449 PFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
P + G S+ ++P+ + L + G+A++ HT D+A G+N LA++V
Sbjct: 69 PLLLRGVTSVAADEPKGKVIHTLIRGGVALFSAHTNADSARPGVNDKLAELV 120
>ref|NP_267229.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
gb|AAK05171.1|AE006340_4 (AE006340) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
Length = 257
Score = 69.7 bits (169), Expect = 2e-11
Identities = 40/111 (36%), Positives = 64/111 (57%)
Frame = +2
Query: 272 QKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHP 451
+K P+E+A D VGL VGN ++ K VLVT D+ Q +A V++I++ HP
Sbjct: 11 EKFCPKELAVEG-DPVGLQVGNPNDELTK---VLVTLDIREQTVAEAKALGVNLIIAKHP 66
Query: 452 FIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
IF ++T+ + Q+ +L L +AG+AVY HT +D GLN + + ++
Sbjct: 67 LIFRPLSALTSMNDQEKLVLDLARAGIAVYTSHTNIDVVTGGLNDYFSQLL 117
>ref|NP_604213.1| (NC_003454) NGG1-interacting factor 3 [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL95512.1| (AE010636) NGG1-interacting factor 3 [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 258
Score = 66.6 bits (161), Expect = 2e-10
Identities = 35/112 (31%), Positives = 66/112 (58%)
Frame = +2
Query: 257 VVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVI 436
++ ++K +P+ A+ WDN+GLL+G+ +++ KK + + D T + +AI + V ++
Sbjct: 6 IINILEKKFPKINAEE-WDNIGLLIGDYDKEVKK---IQFSLDATLESIENAISEKVDML 61
Query: 437 VSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWL 592
+++HP IF K IT + + L K + VY HT +D++ EGLN ++
Sbjct: 62 ITHHPIIFKAIKDITEQNILGKKIRNLIKNDINVYSIHTNLDSSIEGLNDYV 113
>ref|NP_470825.1| (NC_003212) conserved hypothetical protein [Listeria innocua]
emb|CAC96720.1| (AL596168) conserved hypothetical protein [Listeria innocua]
Length = 373
Score = 66.2 bits (160), Expect = 2e-10
Identities = 38/114 (33%), Positives = 68/114 (59%)
Frame = +2
Query: 263 ASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVS 442
A ++K+ P+++A D +GL VG+ +KK ++V+ T D+ +V +AIE+ V +I++
Sbjct: 11 AIMEKIAPKKLAMEG-DPIGLQVGDL---SKKVRKVMFTLDVLEEVVDEAIEKRVDLIIA 66
Query: 443 YHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
+HPF++ + I Q + KL K + V+ HT +D A G+N LAD++
Sbjct: 67 HHPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAHTNLDIAQGGVNDILADLL 120
>ref|NP_464977.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
sp|P53434|YE52_LISMO Hypothetical protein LMO1452
gb|AAA62502.1| (U17284) orfA2; orfA2 forms an operon with orfA1 [Listeria
monocytogenes]
emb|CAC99530.1| (AL591979) conserved hypothetical protein [Listeria monocytogenes]
Length = 373
Score = 65.5 bits (158), Expect = 4e-10
Identities = 36/114 (31%), Positives = 68/114 (59%)
Frame = +2
Query: 263 ASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVS 442
A ++K+ P+++A D +GL VG+ ++K ++++ T D+ +V +AIE+ V +I++
Sbjct: 11 AIMEKIAPKKLAMEG-DPIGLQVGDL---SRKVRKIMFTLDVLEEVVDEAIEKKVDLIIA 66
Query: 443 YHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
+HPF++ + I Q + KL K + V+ HT +D A G+N LAD++
Sbjct: 67 HHPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAHTNLDIAQGGVNNILADLL 120
>ref|NP_269125.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
ref|NP_607129.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAK33846.1| (AE006542) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
gb|AAL97628.1| (AE010027) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 262
Score = 62.8 bits (151), Expect = 3e-09
Identities = 34/98 (34%), Positives = 57/98 (57%)
Frame = +2
Query: 311 DNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITNND 490
D GL +G+ ++D +K V++T D+ +AI+ +V +I++ H IF K + ++
Sbjct: 23 DVKGLQMGSLDKDIRK---VMITLDIRESTVAEAIKNEVDLIITKHAPIFKPLKDLVSS- 78
Query: 491 PQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
PQ+ LL L K ++VY HT +D P GLN W D++
Sbjct: 79 PQRDILLDLVKHDISVYVSHTNIDIVPGGLNDWFCDLL 116
>dbj|BAA12492.1| (D84432) YqfO [Bacillus subtilis]
Length = 279
Score = 62.8 bits (151), Expect = 3e-09
Identities = 36/96 (37%), Positives = 54/96 (55%)
Frame = +2
Query: 311 DNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITNND 490
D +GL +G K K V+VT D+ V +AIE++V +I+++HP IF K I+ +
Sbjct: 27 DKIGLQIGTLN---KPIKNVMVTLDVLESVIDEAIEKEVDLIIAHHPPIFRSLKHISTDQ 83
Query: 491 PQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLAD 598
P + K K +AVY HT +D A G+N LA+
Sbjct: 84 PAGRLIEKCLKHDIAVYAAHTNLDVADGGVNDLLAE 119
>ref|NP_390396.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P54472|YQFO_BACSU HYPOTHETICAL 40.9 KDA PROTEIN IN CCCA-SODA INTERGENIC REGION
pir||A69954 conserved hypothetical protein yqfO - Bacillus subtilis
emb|CAB14447.1| (Z99116) similar to hypothetical proteins [Bacillus subtilis]
Length = 373
Score = 62.8 bits (151), Expect = 3e-09
Identities = 36/96 (37%), Positives = 54/96 (55%)
Frame = +2
Query: 311 DNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITNND 490
D +GL +G K K V+VT D+ V +AIE++V +I+++HP IF K I+ +
Sbjct: 27 DKIGLQIGTLN---KPIKNVMVTLDVLESVIDEAIEKEVDLIIAHHPPIFRSLKHISTDQ 83
Query: 491 PQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLAD 598
P + K K +AVY HT +D A G+N LA+
Sbjct: 84 PAGRLIEKCLKHDIAVYAAHTNLDVADGGVNDLLAE 119
>ref|NP_347934.1| (NC_003030) Uncharacterized protein of YbgI/Acr family [Clostridium
acetobutylicum]
gb|AAK79274.1|AE007642_6 (AE007642) Uncharacterized protein of YbgI/Acr family [Clostridium
acetobutylicum]
Length = 268
Score = 62.0 bits (149), Expect = 4e-09
Identities = 34/114 (29%), Positives = 61/114 (52%)
Frame = +2
Query: 308 WDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITNN 487
+DNVGL+VG+ E ++ D T V +AIE++ ++I+++HP +F P IT +
Sbjct: 24 FDNVGLMVGDREASVDA---IMTALDCTMDVIDEAIEKNCNMIITHHPILFKKPSKITMD 80
Query: 488 DPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIVSGPHESXRSVANPAV 649
++K+ + VY HT +D+ +G+N + +I+ S + N AV
Sbjct: 81 TLLGKKIIKIISNNINVYSAHTNLDSVKDGINDAVVNILGFDKSSILAKNNKAV 134
>ref|NP_562920.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81710.1| (AP003192) conserved hypothetical protein [Clostridium perfringens]
Length = 262
Score = 61.6 bits (148), Expect = 6e-09
Identities = 35/116 (30%), Positives = 64/116 (55%)
Frame = +2
Query: 257 VVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVI 436
++ I+ + P + + +DNVGL+VG+ E++ K +L+ D T +V +A E +I
Sbjct: 6 IINIIEDIAPVNLKE-GFDNVGLMVGDREKNITK---ILLALDCTEEVIKEAKEMGAELI 61
Query: 437 VSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
+++HP +F P +IT + ++ L K + +Y HT D+ GLN L +I+
Sbjct: 62 LTHHPLLFRKPSTITTDTLLGRKIISLIKNDINLYSAHTNWDSVKGGLNDTLVEIL 117
>ref|NP_585938.1| (NC_003234) similarity to NGG1-INTERACTING FACTOR 3
[Encephalitozoon cuniculi]
emb|CAD25542.1| (AL590447) similarity to NGG1-INTERACTING FACTOR 3 [Encephalitozoon
cuniculi]
Length = 242
Score = 61.6 bits (148), Expect = 6e-09
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Frame = +2
Query: 296 ADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKS 475
A WDNVG++V + +D K++L+T DLT V + I V +V+YHP IF K+
Sbjct: 19 AKTDWDNVGVIVDSGTQD----KKILLTIDLTEPVLEECIHLGVKNVVAYHPIIF---KA 71
Query: 476 ITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV-SGP 613
+ +++ ++ K G+ V+ PH+A+D +NT++ +++ SGP
Sbjct: 72 VKKLGSKESIVIGCIKNGINVFTPHSALDPL---MNTYVYNMINSGP 115
>ref|NP_372083.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374672.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42651.1| (AP003134) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57721.1| (AP003362) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 366
Score = 60.8 bits (146), Expect = 1e-08
Identities = 36/97 (37%), Positives = 53/97 (54%)
Frame = +2
Query: 305 SWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITN 484
SWDNVGLL+G+ + + VL D T +V +AIE+ + I+S+HP IF G S+
Sbjct: 21 SWDNVGLLIGDGDVEVTG---VLTALDCTLEVVNEAIEKGYNTIISHHPLIFKGVTSLKA 77
Query: 485 NDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
N + KL + + + HT +D P G+N LA
Sbjct: 78 NG-YGLIIRKLIQHDINLIAMHTNLDVNPYGVNMMLA 113
>ref|NP_359055.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAL00266.1| (AE008515) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 265
Score = 58.5 bits (140), Expect = 5e-08
Identities = 35/116 (30%), Positives = 58/116 (49%)
Frame = +2
Query: 257 VVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVI 436
V+ + + P+E + D+ GL +G + K +RV+V D+ + +AIE+ V +I
Sbjct: 6 VIQAYEAFCPQEFSMEG-DSCGLQIGTLD---KGIQRVMVALDIREETVAEAIEKGVDLI 61
Query: 437 VSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
+ H IF K + + PQ + L K +AVY HT +D GLN W ++
Sbjct: 62 IVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQML 117
>ref|NP_346053.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK75693.1| (AE007455) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 265
Score = 57.8 bits (138), Expect = 8e-08
Identities = 35/116 (30%), Positives = 58/116 (49%)
Frame = +2
Query: 257 VVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVI 436
V+ + + P+E + D+ GL +G + K +RV+V D+ + +AIE+ V +I
Sbjct: 6 VIQAYEAFCPQEFSMEG-DSRGLQIGTLD---KGIQRVMVALDIREETVAEAIEKGVDLI 61
Query: 437 VSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
+ H IF K + + PQ + L K +AVY HT +D GLN W ++
Sbjct: 62 IVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQML 117
>dbj|BAA11246.1| (D78182) ORF4 [Streptococcus mutans]
Length = 262
Score = 53.5 bits (127), Expect = 2e-06
Identities = 31/98 (31%), Positives = 50/98 (50%)
Frame = +2
Query: 311 DNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITNND 490
D GL +G + K+ KR+++ D+ +AIE+ V +++ H IF K++
Sbjct: 23 DISGLQIGTLD---KEIKRLMIALDVRETTVAEAIEKKVDLLIVKHAPIFRPLKNLVET- 78
Query: 491 PQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
Q L K +AVY HT +D P+GLN W D++
Sbjct: 79 AQNHIYFNLIKHDIAVYVSHTNIDIVPDGLNDWFCDLL 116
>ref|NP_216746.1| (NC_000962) hypothetical protein Rv2230c [Mycobacterium
tuberculosis H37Rv]
sp|Q10514|YM30_MYCTU Hypothetical 39.6 kDa protein Rv2230c
pir||B70777 hypothetical protein Rv2230c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA94653.1| (Z70692) hypothetical protein Rv2230c [Mycobacterium tuberculosis
H37Rv]
Length = 379
Score = 52.8 bits (125), Expect = 3e-06
Identities = 33/116 (28%), Positives = 62/116 (53%)
Frame = +2
Query: 257 VVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVI 436
V+ + + YP +A +SWD+VGL+ G+ ++ V V D T V +D + Q ++
Sbjct: 8 VIDVLDQAYPPRLA-QSWDSVGLVCGDPDDVVDS---VTVAVDATPAV-VDQVPQ-AGLL 61
Query: 437 VSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
+ +HP + G ++ N P+ + +L + G +++ HT D+A G++ LA V
Sbjct: 62 LVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAV 117
>emb|CAB88179.1| (AL352972) hypothetical protein SCC30.09c [Streptomyces coelicolor
A3(2)]
Length = 285
Score = 52.4 bits (124), Expect = 4e-06
Identities = 36/135 (26%), Positives = 64/135 (46%)
Frame = +2
Query: 257 VVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVI 436
V+ ++ L+P E A+ SWD VG +VG +++ RVL D + +A+ ++
Sbjct: 7 VITALDALWPAERAE-SWDAVGTVVGEPDQEVS---RVLFAVDPVQETVDEAVGLGADLL 62
Query: 437 VSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIVSGPH 616
V++HP G ++ + + + L K +A++ HT D A G++ LA +
Sbjct: 63 VTHHPLYLRGTTTVAASTFKGRVVHTLIKNDIALHVAHTNADTADPGVSDALAGALD--- 119
Query: 617 ESXRSVANPAVNAPS 661
+V P V PS
Sbjct: 120 ---LNVVRPLVPDPS 131
>ref|NP_242246.1| (NC_002570) BH1380~unknown conserved protein [Bacillus halodurans]
sp|Q9KD39|YD80_BACHD Hypothetical protein BH1380
dbj|BAB05099.1| (AP001511) BH1380~unknown conserved protein [Bacillus halodurans]
Length = 372
Score = 52.4 bits (124), Expect = 4e-06
Identities = 34/116 (29%), Positives = 56/116 (47%)
Frame = +2
Query: 251 KAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVS 430
+ V+ ++ P+ +A D G+L+G K +RVL D+T V +AIE
Sbjct: 7 QTVIQLFERWSPKSLAVEG-DKNGVLIGTLN---KPIQRVLTALDVTESVIDEAIELGAE 62
Query: 431 VIVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLAD 598
+I+++HP IF SI + + K K + +Y HT +D G+N +AD
Sbjct: 63 LILAHHPIIFRPLSSIRTDTAYGRIIEKAIKHDLTIYAAHTNLDITKGGVNDLMAD 118
>ref|NP_302129.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
pir||T44719 hypothetical protein MLCB1243.36 [imported] - Mycobacterium leprae
emb|CAA19217.1| (AL023635) hypothetical protein MLCB1243.36 [Mycobacterium leprae]
emb|CAC30590.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 385
Score = 51.2 bits (121), Expect = 8e-06
Identities = 30/115 (26%), Positives = 61/115 (52%)
Frame = +2
Query: 257 VVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVI 436
V+ + YP A +SWD+VGL+ G+ E+ + + + D T V + D ++
Sbjct: 8 VIEVLDHAYPPRFA-QSWDSVGLVCGDPEDVLEA---ITIAVDATPAVIDEV--PDSGLL 61
Query: 437 VSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADI 601
+ +HP + G ++ + P+ A + +L ++G +++ HT D+A G++ LA +
Sbjct: 62 LVHHPLLLHGVDTVAVSTPKGALVHRLIRSGRSLFTAHTNADSASPGVSDALAHV 116
>ref|NP_326287.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13629.1| (AL445564) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 251
Score = 50.8 bits (120), Expect = 1e-05
Identities = 32/111 (28%), Positives = 56/111 (49%), Gaps = 2/111 (1%)
Frame = +2
Query: 269 IQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYH 448
+++ YP E + WD G + + + ++V DLT V AIE+ ++I+++H
Sbjct: 5 LEEKYPIENCE-PWDFCGFSYKVNFYNREDLTGIVVALDLTDHVLEKAIEEKANLIITHH 63
Query: 449 PFIFGG--PKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
PFI+ + N ++ KL K ++VY HT DA +G + W+A
Sbjct: 64 PFIYNNNLEEEFANFPYKEKIYNKLVKLKISVYSLHTNFDADKQGTSYWVA 114
>ref|NP_281877.1| (NC_002163) hypothetical protein Cj0705 [Campylobacter jejuni]
sp|Q9PPK2|Y705_CAMJE Hypothetical protein Cj0705
pir||D81341 hypothetical protein Cj0705 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72979.1| (AL139076) hypothetical protein Cj0705 [Campylobacter jejuni]
Length = 241
Score = 45.1 bits (105), Expect = 6e-04
Identities = 30/114 (26%), Positives = 60/114 (52%)
Frame = +2
Query: 269 IQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYH 448
+ +L P I + SWDN G+L+G+ + + V ++ D+ + +A E S+I+++H
Sbjct: 10 LDQLSPFNIQE-SWDNSGILLGDRDSEI---STVYLSLDIDENIIKEASEN--SLIITHH 63
Query: 449 PFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIVSG 610
P IF G K + + +A + ++ +++ HT D + LNT+ + + G
Sbjct: 64 PLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDLS--HLNTYFTEEILG 115
>ref|NP_487256.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB74915.1| (AP003592) ORF_ID:alr3216~hypothetical protein [Nostoc sp. PCC
7120]
Length = 263
Score = 43.9 bits (102), Expect = 0.001
Identities = 32/101 (31%), Positives = 46/101 (44%), Gaps = 1/101 (0%)
Frame = +2
Query: 305 SWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITN 484
SWDN G + ++ RVLV T V +AI ++I ++HP IF PKS+
Sbjct: 21 SWDNCGWQI--EPGILHEEARVLVCLTPTLAVMEEAIALQANLIFAHHPLIFSPPKSLRR 78
Query: 485 NDP-QQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADIV 604
+ L TK + +Y HT D +G LA I+
Sbjct: 79 GEAIADMARLAFTK-NIGIYSAHTNFDQVEDGTADVLAQIL 118
>ref|NP_247922.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii]
sp|Q58337|Y927_METJA Hypothetical protein MJ0927
pir||G64415 hypothetical protein homolog MJ0927 - Methanococcus jannaschii
gb|AAB98929.1| (U67536) conserved hypothetical protein [Methanococcus jannaschii]
Length = 249
Score = 41.6 bits (96), Expect = 0.006
Identities = 29/117 (24%), Positives = 61/117 (51%)
Frame = +2
Query: 251 KAVVASIQKLYPEEIADRSWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVS 430
K ++ I+ P+++A DN+GL VG++ + K+ K++ + D + V A ++ V
Sbjct: 9 KEIIEFIETFAPKDLAIEG-DNIGLQVGDNLD--KEIKKLGIALDPSLSVIKKAEKEGVD 65
Query: 431 VIVSYHPFIFGGPKSITNNDPQQATLLKLTKAGMAVYCPHTAVDAAPEGLNTWLADI 601
+ ++HP + ++ T ++ +L + + +Y HT +D GLN LA++
Sbjct: 66 FLFTHHPLLKDPIRNFTGVIYKKLKILM--ENDIILYSAHTNLDICKNGLNDALAEL 120
>ref|NP_078185.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||G82901 conserved hypothetical UU351 [imported] - Ureaplasma urealyticum
gb|AAF30760.1|AE002132_4 (AE002132) conserved hypothetical [Ureaplasma urealyticum]
Length = 262
Score = 37.0 bits (84), Expect = 0.15
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +2
Query: 305 SWDNVGLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITN 484
+WD GL ++ + V + D+T V DAI + ++I+S+HP +
Sbjct: 26 AWDKNGLFF----DEQQTINNVQIALDITDDVVNDAILNNANLIISHHPLFTNQDSNDEV 81
Query: 485 NDPQQATLL-KLTKAGMAVYCPHTAVDAAPEGLNTWLA 595
N L+ K+ K +++ HTA DA+ G++ +A
Sbjct: 82 NYFVNIDLIEKIKKNKISLIHLHTAFDASANGMSMQMA 119
>ref|NP_280510.1| (NC_002607) Vng1766c [Halobacterium sp. NRC-1]
gb|AAG19990.1| (AE005081) Vng1766c [Halobacterium sp. NRC-1]
Length = 253
Score = 33.5 bits (75), Expect = 1.7
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +2
Query: 320 GLLVGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITNNDPQQ 499
GL VG + + R+ D DA+E ++V +H +GG ++T + +
Sbjct: 26 GLQVGPGDRSVE---RIAFAVDAAAATISDAVEWGADLLVVHHGVAWGGLDAVTGREYDR 82
Query: 500 ATLLKLTKAGMAVYCPHTAVDAAPE-GLNTWLADIV 604
+ L A+Y H +D PE G +AD++
Sbjct: 83 --IAALVDGECALYAAHLPLDGHPELGNAAHVADVL 116
>sp|Q02357|ANK1_MOUSE Ankyrin 1 (Erythrocyte ankyrin)
pir||I49502 ankyrin - mouse
gb|AAA37236.1| (M84756) ankyrin [Mus musculus]
Length = 1862
Score = 32.7 bits (73), Expect = 2.9
Identities = 40/155 (25%), Positives = 60/155 (37%), Gaps = 7/155 (4%)
Frame = +2
Query: 191 AKMSESGAWGAWQVET--SSFTKAVVASIQKLYPEEIADRSWDNVGL--LVGNSEEDTKK 358
+K +S A W++E S T+ Q L ++ D N GL L+G E +
Sbjct: 1584 SKAEDSDAIPEWKLEGAHSEDTQGPELGSQDLVEDDTVDSDATN-GLADLLGQEEGQRSE 1642
Query: 359 KKRVLVTN---DLTYQVAMDAIEQDVSVIVSYHPFIFGGPKSITNNDPQQATLLKLTKAG 529
KKR V+ D +V++ + +Q V H I P D QA L K G
Sbjct: 1643 KKRQEVSGTEQDTETEVSLVSGQQRV------HARITDSPSVRQVLDRSQARTLDWDKQG 1696
Query: 530 MAVYCPHTAVDAAPEGLNTWLADIVSGPHESXRSV 634
P A ++ W ++ GPH R +
Sbjct: 1697 STAVHPQEATQSS------WQEEVTQGPHSFQRRI 1725
>ref|NP_051831.1| (NC_001132) m117L [Myxoma virus]
gb|AAF15005.1|AF170726_121 (AF170726) m117L [Myxoma virus]
Length = 302
Score = 32.0 bits (71), Expect = 5.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 72 HIDYYPRLSRDITSHIKDQSDFVPPVILQATQSHPLKHT 188
+ID+YP + D+ +H+KD DF+ V++ SH L T
Sbjct: 196 YIDHYPWI--DLKTHVKDVLDFLEGVLVADVHSHKLDTT 232
>ref|NP_078319.1| (NC_002162) unique hypothetical [Ureaplasma urealyticum]
pir||F82885 hypothetical protein UU482 [imported] - Ureaplasma urealyticum
gb|AAF30894.1|AE002145_2 (AE002145) unique hypothetical [Ureaplasma urealyticum]
Length = 4688
Score = 32.0 bits (71), Expect = 5.0
Identities = 22/80 (27%), Positives = 36/80 (44%), Gaps = 5/80 (6%)
Frame = +2
Query: 299 DRSWDNVGLL-----VGNSEEDTKKKKRVLVTNDLTYQVAMDAIEQDVSVIVSYHPFIFG 463
D ++DN G L + N D K+K + N V D IE ++ V + + +
Sbjct: 637 DFTYDNDGNLEIHTQLANDLNDDLKQKALNNANVKGIVVDQDGIEHEIDVSIDANGKVII 696
Query: 464 GPKSITNNDPQQATLLKLTK 523
K++ NNDP + + L K
Sbjct: 697 PTKNLANNDPTKPNIYTLKK 716
>ref|NP_461226.1| (NC_003197) sn-glycerol-3-phosphate dehydrogenase (anaerobic),
large subunit [Salmonella typhimurium LT2]
gb|AAL21185.1| (AE008802) sn-glycerol-3-phosphate dehydrogenase (anaerobic), large
subunit [Salmonella typhimurium LT2]
Length = 542
Score = 31.2 bits (69), Expect = 8.5
Identities = 21/63 (33%), Positives = 31/63 (48%)
Frame = -1
Query: 660 EGALTAGLATERXLS*GPDTISASHVLRPSGAASTAVWGQ*TAMPALVSLRRVAC*GSLL 481
EGA G+ L+ T+ A V+ +G +WGQ A A +S+R GSLL
Sbjct: 180 EGATVCGVHVRNHLTGETQTLHAPVVVNAAG-----IWGQRIAEYADLSIRMFPAKGSLL 234
Query: 480 VID 472
++D
Sbjct: 235 IMD 237
>ref|NP_456827.1| (NC_003198) anaerobic glycerol-3-phosphate dehydrogenase subunit A
[Salmonella enterica subsp. enterica serovar Typhi]
emb|CAD07516.1| (AL627274) anaerobic glycerol-3-phosphate dehydrogenase subunit A
[Salmonella enterica subsp. enterica serovar Typhi]
Length = 542
Score = 31.2 bits (69), Expect = 8.5
Identities = 21/63 (33%), Positives = 31/63 (48%)
Frame = -1
Query: 660 EGALTAGLATERXLS*GPDTISASHVLRPSGAASTAVWGQ*TAMPALVSLRRVAC*GSLL 481
EGA G+ L+ T+ A V+ +G +WGQ A A +S+R GSLL
Sbjct: 180 EGATVCGVHVRNHLTGETQTLHAPVVVNAAG-----IWGQRIAEYADLSIRMFPAKGSLL 234
Query: 480 VID 472
++D
Sbjct: 235 IMD 237
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,886,029
Number of Sequences: 907641
Number of extensions: 6381136
Number of successful extensions: 19002
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 18238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18966
length of database: 284,333,007
effective HSP length: 116
effective length of database: 179,046,651
effective search space used: 18620851704
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)