BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_10_E19.seq
(663 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS002CH11F.B mgns002cH11f.b LENGTH:419bp ; DIRECTION:0 ; CLONE... 30 0.25
CL53CT60CN63 cl53ct60cn63 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3... 30 0.25
CL158CT169CN175 cl158ct169cn175 COVERAGE:0.97; CRAWID: 1; TOTAL_... 30 0.25
MGNS010BF12F.B mgns010bF12f.b LENGTH:224bp ; DIRECTION:0 ; CLONE... 28 0.98
MGNS007CF08F.B mgns007cF08f.b LENGTH:376bp ; DIRECTION:0 ; CLONE... 28 0.98
CL277CT289CN296 cl277ct289cn296 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 28 0.98
MGNS012CC03F.B mgns012cC03f.b LENGTH:373bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS011AA11F.B mgns011aA11f.b LENGTH:382bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS010CG09F.B mgns010cG09f.b LENGTH:347bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS010CE06F.B mgns010cE06f.b LENGTH:386bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS009BA12F.B mgns009bA12f.b LENGTH:227bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS002AH08F.B mgns002aH08f.b LENGTH:498bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS001DE02F.B mgns001dE02f.b LENGTH:418bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS001BB12F.B mgns001bB12f.b LENGTH:560bp ; DIRECTION:0 ; CLONE... 26 3.9
CL99CT110CN114 cl99ct110cn114 COVERAGE:0.98; CRAWID: 1; TOTAL_ES... 26 3.9
CL37CT43CN46 cl37ct43cn46 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:1... 26 3.9
CL202CT213CN219 cl202ct213cn219 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.9
CL181CT192CN198 cl181ct192cn198 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.9
CL102CT113CN118 cl102ct113cn118 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.9
>MGNS002CH11F.B mgns002cH11f.b LENGTH:419bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 419
Score = 30.2 bits (15), Expect = 0.25
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 350 accaagaagaagaag 364
|||||||||||||||
Sbjct: 203 accaagaagaagaag 217
>CL53CT60CN63 cl53ct60cn63 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgns001bE09f.b,mgns001
Length = 680
Score = 30.2 bits (15), Expect = 0.25
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 caccaaggccgttgt 261
|||||||||||||||
Sbjct: 502 caccaaggccgttgt 516
>CL158CT169CN175 cl158ct169cn175 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns004aA05f.b,mgns
Length = 522
Score = 30.2 bits (15), Expect = 0.25
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 250 caaggccgttgttgc 264
|||||||||||||||
Sbjct: 195 caaggccgttgttgc 209
Score = 28.2 bits (14), Expect = 0.98
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 562 cgctgctcctgaag 575
||||||||||||||
Sbjct: 242 cgctgctcctgaag 255
>MGNS010BF12F.B mgns010bF12f.b LENGTH:224bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 224
Score = 28.2 bits (14), Expect = 0.98
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 565 tgctcctgaaggcctcaa 582
||||| ||||||||||||
Sbjct: 80 tgctcatgaaggcctcaa 63
>MGNS007CF08F.B mgns007cF08f.b LENGTH:376bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 376
Score = 28.2 bits (14), Expect = 0.98
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 actttgttcctcct 146
||||||||||||||
Sbjct: 292 actttgttcctcct 305
>CL277CT289CN296 cl277ct289cn296 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns011dC06f.b,mgns0
Length = 494
Score = 28.2 bits (14), Expect = 0.98
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 352 caagaagaagaagc 365
||||||||||||||
Sbjct: 418 caagaagaagaagc 431
>MGNS012CC03F.B mgns012cC03f.b LENGTH:373bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 373
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 208 cggagcttggggt 220
|||||||||||||
Sbjct: 364 cggagcttggggt 352
>MGNS011AA11F.B mgns011aA11f.b LENGTH:382bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 382
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 327 tggttggaaactc 339
|||||||||||||
Sbjct: 155 tggttggaaactc 143
>MGNS010CG09F.B mgns010cG09f.b LENGTH:347bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 347
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 352 caagaagaagaag 364
|||||||||||||
Sbjct: 289 caagaagaagaag 301
>MGNS010CE06F.B mgns010cE06f.b LENGTH:386bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 386
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 352 caagaagaagaag 364
|||||||||||||
Sbjct: 50 caagaagaagaag 62
>MGNS009BA12F.B mgns009bA12f.b LENGTH:227bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 227
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 350 accaagaagaaga 362
|||||||||||||
Sbjct: 109 accaagaagaaga 121
>MGNS002AH08F.B mgns002aH08f.b LENGTH:498bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 498
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 642 ctgctgtcaacgc 654
|||||||||||||
Sbjct: 84 ctgctgtcaacgc 72
>MGNS001DE02F.B mgns001dE02f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 418
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 454 catctttggcggc 466
|||||||||||||
Sbjct: 221 catctttggcggc 233
>MGNS001BB12F.B mgns001bB12f.b LENGTH:560bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 560
Score = 26.3 bits (13), Expect = 3.9
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 138 gttcctcctgtcattct 154
|||| ||||||||||||
Sbjct: 224 gttcatcctgtcattct 240
>CL99CT110CN114 cl99ct110cn114 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns001dG07f.b,mgns0
Length = 433
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 481 caacaacgaccct 493
|||||||||||||
Sbjct: 60 caacaacgaccct 72
>CL37CT43CN46 cl37ct43cn46 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:11;
ESTS:mgns001bB01f.b,mgns00
Length = 986
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 502 cacccttctcaag 514
|||||||||||||
Sbjct: 848 cacccttctcaag 836
>CL202CT213CN219 cl202ct213cn219 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns007bE08f.b,mgns
Length = 648
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 187 ctcagccaaaatg 199
|||||||||||||
Sbjct: 190 ctcagccaaaatg 202
>CL181CT192CN198 cl181ct192cn198 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007aA06f.b,mgns
Length = 604
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 357 agaagaagcgagt 369
|||||||||||||
Sbjct: 156 agaagaagcgagt 144
>CL102CT113CN118 cl102ct113cn118 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns001dH08f.b,mgns
Length = 506
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 199 gagcgaaagcgga 211
|||||||||||||
Sbjct: 110 gagcgaaagcgga 98
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 193
Number of Sequences: 1206
Number of extensions: 193
Number of successful extensions: 62
Number of sequences better than 10.0: 19
length of query: 663
length of database: 496,015
effective HSP length: 14
effective length of query: 649
effective length of database: 479,131
effective search space: 310956019
effective search space used: 310956019
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)