The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_E23.seq Fgr_10_E23 LENGTH:423bp ; DIRECTION:5
; CLONE:Fgr_10_E23 ; CLONELIB: n/a ; TISSU
(423 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_097377.1| (XM_097377) hypothetical protein DKFZp547M... 35 0.18
ref|NP_150481.1| (NC_003027) LSDV047 hypothetical protein [... 32 1.5
emb|CAB72252.1| (AJ271817) heavy metal-responsive transcrip... 31 2.6
ref|XP_103747.1| (XM_103747) hypothetical protein XP_103747... 31 2.6
ref|NP_056996.1| (NM_015912) hypothetical protein [Homo sap... 31 2.6
ref|NP_436340.1| (NC_003037) Putative ABC transporter, perm... 31 2.6
pir||T09194 adaptor protein intersectin - African clawed fr... 30 3.3
pir||T51602 shock protein SRC2 homolog [imported] - Arabido... 30 3.3
ref|NP_563835.1| (NM_100778) expressed protein [Arabidopsis... 30 3.3
gb|AAL14025.1| (AY058796) SD10848p [Drosophila melanogaster] 30 4.4
gb|AAF52020.1| (AE003602) CG12167 gene product [Drosophila ... 30 4.4
gb|AAF50271.1| (AE003552) MTF-1 gene product [Drosophila me... 30 4.4
emb|CAC14279.1| (AJ297844) heavy metal-responsive transcrip... 30 4.4
ref|NP_602021.1| (NC_003450) hypothetical protein, predicte... 30 5.7
gb|AAB36556.1| (U77974) transcription factor homolog [Tribo... 29 7.4
dbj|BAB63634.1| (AP003263) hypothetical protein [Oryza sati... 29 7.4
ref|XP_064513.1| (XM_064513) hypothetical protein XP_064513... 29 7.4
gb|AAD15364.1| (AC004744) similar to KIAA0600; match to EST... 29 7.4
ref|XP_068257.1| (XM_068257) hypothetical protein XP_068257... 29 7.4
sp|P16859|ANFB_CANFA Brain natriuretic peptide precursor (B... 29 7.4
ref|NP_197615.1| (NM_122124) AKIN beta1 [Arabidopsis thaliana] 29 9.7
emb|CAB64718.1| (AJ132315) AKIN gamma [Arabidopsis thaliana] 29 9.7
gb|AAL69951.1| (AF464895) lipoxygenase [Oryza sativa] 29 9.7
pir||I52685 gene MM1 protein - human (fragment) >gi|914158|... 29 9.7
ref|XP_035235.1| (XM_035235) rhotekin [Homo sapiens] 29 9.7
gb|AAF78928.1|AF255446_1 (AF255446) Dip1-associated protein... 29 9.7
gb|AAL16767.1|AF049227_1 (AF049227) RTKN [Homo sapiens] 29 9.7
gb|AAH04558.1|AAH04558 (BC004558) Similar to rhotekin [Homo... 29 9.7
pir||T00093 hypothetical protein KIAA0467 - human (fragment... 29 9.7
ref|NP_149035.1| (NM_033046) rhotekin [Homo sapiens] >gi|17... 29 9.7
ref|NP_037448.1| (NM_013316) CCR4-NOT transcription complex... 29 9.7
ref|XP_045804.1| (XM_045804) CCR4-NOT transcription complex... 29 9.7
>ref|XP_097377.1| (XM_097377) hypothetical protein DKFZp547M072 [Homo sapiens]
Length = 196
Score = 34.7 bits (78), Expect = 0.18
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 227 GLGGAPPLIGKECPG*GAHR-ANEAGNWNTYGCCCNREGAVEEPPMGEAGTEQVGSP 394
G G PL + G G + A A WN C C+R G+VE P G G G P
Sbjct: 38 GFGSHRPLPPLQGTGFGRQKTAPRAARWNGCSCFCSRNGSVERPG-GTRGVRTTGHP 93
>ref|NP_150481.1| (NC_003027) LSDV047 hypothetical protein [lumpy skin disease virus]
gb|AAK85008.1| (AF325528) LSDV047 hypothetical protein [lumpy skin disease virus]
Length = 394
Score = 31.6 bits (70), Expect = 1.5
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 20 YRIMKSFGDVPQSQNPPGRQKTHV--KSALTQKSMTTRGFQY 139
YRI++S DVP+ + P +K ++ KSA + TTR QY
Sbjct: 351 YRIIESTFDVPKLKISPNGKKRYITCKSAFNNSTFTTRSGQY 392
>emb|CAB72252.1| (AJ271817) heavy metal-responsive transcription factor-1
[Drosophila melanogaster]
Length = 791
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +2
Query: 224 SGLGGAPPLIGKECPG*GAHRANEAGNWNTYGCCCNREGAVEEPPM 361
SG+ P G C G A A ++ CCC+ +G V+EPP+
Sbjct: 687 SGVASTPKPTGGCCSG-NQKPAPTATTASSPSCCCSGKGEVQEPPV 731
>ref|XP_103747.1| (XM_103747) hypothetical protein XP_103747 [Homo sapiens]
Length = 233
Score = 30.8 bits (68), Expect = 2.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +2
Query: 233 GGAPPL---IGKECPG*GAHRANEAGNWNTYGCCCNREGAV------EEPPMGEAG 373
GG+P L +G+E G N A W++ CCC+ + PP E+G
Sbjct: 75 GGSPDLLEGVGREKSGIRIQATNRAAVWSSKTCCCSSAAVAAMHMLRDMPPPSESG 130
>ref|NP_056996.1| (NM_015912) hypothetical protein [Homo sapiens]
gb|AAD20030.1| (AF131744) Unknown [Homo sapiens]
Length = 341
Score = 30.8 bits (68), Expect = 2.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 284 RANEAGNWNTYGCCCNREGAVEEPPMGEAGTEQVGSPWEAT 406
R + G WN+ GC C G + P + G+PW T
Sbjct: 296 RGRKFGRWNSPGCLCPWPGWEQCRPPAGKDFHRTGAPWRKT 336
>ref|NP_436340.1| (NC_003037) Putative ABC transporter, permease protein
[Sinorhizobium meliloti]
gb|AAK65752.1| (AE007295) Putative ABC transporter, permease protein
[Sinorhizobium meliloti]
Length = 323
Score = 30.8 bits (68), Expect = 2.6
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = -1
Query: 390 LPTCSVPASPMGGSST-APSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKPLRWM 214
+P V A +G ++ +RL HP V L + + P+ GGA P +RWM
Sbjct: 100 IPAVFVLAGLIGATNGYCVTRLSVHPIVATLSMQYIVLGI-TRVLRPVSGGAVPDSVRWM 158
Query: 213 VKQGSRF*RRKVFKSQDGKGIPPVLYWNPRVVIDFW 106
V +GS F GIP ++W ++ W
Sbjct: 159 V-EGSLF------------GIPLPVFWGIVTMLVAW 181
>pir||T09194 adaptor protein intersectin - African clawed frog
gb|AAC73068.1| (AF032118) intersectin [Xenopus laevis]
Length = 1270
Score = 30.4 bits (67), Expect = 3.3
Identities = 27/83 (32%), Positives = 36/83 (42%), Gaps = 11/83 (13%)
Frame = -1
Query: 378 SVPASPMGGSSTAPSRLQQHP---YVFQLPASFALWAP*PGHSLPIK--------GGAPP 232
SVP P S+ AP+ +Q HP + LP S + G + K APP
Sbjct: 151 SVPTVPPL-SNGAPAVIQSHPAFAHSATLPKSSSFGRSVAGSQINTKLQKAQSFDVPAPP 209
Query: 231 KPLRWMVKQGSRF*RRKVFKSQD 163
+ W V SR R++F SQD
Sbjct: 210 LVVEWAVPSSSRLKYRQLFNSQD 232
>pir||T51602 shock protein SRC2 homolog [imported] - Arabidopsis thaliana
emb|CAA07573.1| (AJ007586) src2-like protein [Arabidopsis thaliana]
Length = 324
Score = 30.4 bits (67), Expect = 3.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 311 YSNYQPHSPYGHPSQGIPYQ 252
Y Y P PYG+P QG P Q
Sbjct: 238 YPGYPPQGPYGYPQQGYPPQ 257
>ref|NP_563835.1| (NM_100778) expressed protein [Arabidopsis thaliana]
gb|AAB70401.1| (AC000106) Similar to Glycine SRC2 (gb|AB000130). ESTs
gb|H76869,gb|T21700,gb|ATTS5089 come from this gene.
[Arabidopsis thaliana]
gb|AAK73938.1| (AY045580) At1g09070/F7G19_6 [Arabidopsis thaliana]
Length = 324
Score = 30.4 bits (67), Expect = 3.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 311 YSNYQPHSPYGHPSQGIPYQ 252
Y Y P PYG+P QG P Q
Sbjct: 238 YPGYPPQGPYGYPQQGYPPQ 257
>gb|AAL14025.1| (AY058796) SD10848p [Drosophila melanogaster]
Length = 570
Score = 30.0 bits (66), Expect = 4.4
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +2
Query: 224 SGLGGAPPLIGKECPG*GAHRANEAGNWNTYGCCCNREGAVEEPPM 361
SG+ P G C G A A ++ CCC+ +G V+EPP+
Sbjct: 466 SGVASTPKPTGGCCSG-NQKPAPTATAASSPSCCCSGKGEVQEPPV 510
>gb|AAF52020.1| (AE003602) CG12167 gene product [Drosophila melanogaster]
Length = 399
Score = 30.0 bits (66), Expect = 4.4
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = -1
Query: 393 GLPTCSVPASPMGGSSTAPSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKP 226
GLP +V P + P+ LQQ P QLPA+F P H P PP P
Sbjct: 230 GLPVQAVQPPPPPPFAFNPTLLQQGPPQMQLPAAF-FHGHLPLHLHPAAVAPPPPP 284
>gb|AAF50271.1| (AE003552) MTF-1 gene product [Drosophila melanogaster]
Length = 752
Score = 30.0 bits (66), Expect = 4.4
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +2
Query: 224 SGLGGAPPLIGKECPG*GAHRANEAGNWNTYGCCCNREGAVEEPPM 361
SG+ P G C G A A ++ CCC+ +G V+EPP+
Sbjct: 648 SGVASTPKPTGGCCSG-NQKPAPTATAASSPSCCCSGKGEVQEPPV 692
>emb|CAC14279.1| (AJ297844) heavy metal-responsive transcription factor-1
[Drosophila melanogaster]
Length = 791
Score = 30.0 bits (66), Expect = 4.4
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +2
Query: 224 SGLGGAPPLIGKECPG*GAHRANEAGNWNTYGCCCNREGAVEEPPM 361
SG+ P G C G A A ++ CCC+ +G V+EPP+
Sbjct: 687 SGVASTPKPTGGCCSG-NQKPAPTATAASSPSCCCSGKGEVQEPPV 731
>ref|NP_602021.1| (NC_003450) hypothetical protein, predicted by GeneMark hmm
[Corynebacterium glutamicum]
Length = 579
Score = 29.6 bits (65), Expect = 5.7
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = -1
Query: 387 PTCSVPASPMGGSSTAPSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKP 226
P SVP+ P+ GS T P+ P A PG +LP G APP P
Sbjct: 134 PGASVPSIPVPGSVTPPA-----------PGISA-----PGGALPTPGSAPPTP 171
Score = 28.9 bits (63), Expect = 9.7
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 387 PTCSVPASPMGGSSTAPSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKPL 223
P ++PA GG+ P++ +Q +P + A P PG S+P G A P P+
Sbjct: 17 PGNAIPAP--GGAIPTPAKTEQDA----VPPTVAAKLPVPGSSIPAPGRALPTPV 65
>gb|AAB36556.1| (U77974) transcription factor homolog [Tribolium castaneum]
Length = 276
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 320 THMYSNYQPHSPYGHPSQGIPYQ 252
TH Y+ Y P+ +G P GIP Q
Sbjct: 170 THHYARYHPYPNFGVPPAGIPLQ 192
>dbj|BAB63634.1| (AP003263) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 365
Score = 29.3 bits (64), Expect = 7.4
Identities = 24/74 (32%), Positives = 32/74 (42%), Gaps = 12/74 (16%)
Frame = -1
Query: 408 SVASHGLPTCSVPA-SPMGGS------STAPSRLQQHPYVFQLPASFALWAP-----*PG 265
+ A HGLP S PA +P+ G+ AP + H + F L +F + AP G
Sbjct: 64 AAAGHGLPPLSAPAPAPIAGADDLPAFGRAPKQAPPH-FGFPLQPTFGVAAPPVAPTAAG 122
Query: 264 HSLPIKGGAPPKPL 223
P G P PL
Sbjct: 123 EGYPFIGSNPTVPL 136
>ref|XP_064513.1| (XM_064513) hypothetical protein XP_064513 [Homo sapiens]
Length = 249
Score = 29.3 bits (64), Expect = 7.4
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = -1
Query: 381 CSVPASPMGGSSTA--PSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKP 226
C P P G P R + + P +LW PGHS+ KG P +P
Sbjct: 97 CQRPLPPRSGRPAGHRPRRRELPLKLQPPPRPTSLWGSCPGHSVSKKGQVPERP 150
>gb|AAD15364.1| (AC004744) similar to KIAA0600; match to EST T06037 (NID:g317186)
and similar to protein PID:g3043724 [Homo sapiens]
Length = 80
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 199 KVLEEESLQKSGWKRNPPCTILEPP 125
K++E + L S WKR+ PC + PP
Sbjct: 23 KIIEIQKLLVSLWKRSQPCEVPSPP 47
>ref|XP_068257.1| (XM_068257) hypothetical protein XP_068257 [Homo sapiens]
ref|XP_094177.1| (XM_094177) hypothetical protein XP_094177 [Homo sapiens]
Length = 148
Score = 29.3 bits (64), Expect = 7.4
Identities = 17/43 (39%), Positives = 20/43 (45%)
Frame = +2
Query: 284 RANEAGNWNTYGCCCNREGAVEEPPMGEAGTEQVGSPWEATEQ 412
R N N T G R A+ E P G A TE+ S WE +Q
Sbjct: 81 RHNLPQNVTTPGTPLPRPQAIPEGPWGAASTEEGASQWERGKQ 123
>sp|P16859|ANFB_CANFA Brain natriuretic peptide precursor (BNP)
gb|AAA30832.1| (M31777) brain natriuretic protein [Canis sp.]
Length = 140
Score = 29.3 bits (64), Expect = 7.4
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 209 LTIHLSGLGGAPPLIGKECPG*GAHRANEA-GNWNTYGCCCNREGAVEEPPMGEAGTEQV 385
L +HLS LGG P +G P A A+EA G W + AV E + E +
Sbjct: 15 LFLHLSPLGGRPHPLGGRSPASEASEASEASGLWAVQELLGRLKDAVSELQAEQLALEPL 74
Query: 386 ---GSPWEATE 409
SP EA E
Sbjct: 75 HRSHSPAEAPE 85
>ref|NP_197615.1| (NM_122124) AKIN beta1 [Arabidopsis thaliana]
Length = 283
Score = 28.9 bits (63), Expect = 9.7
Identities = 22/85 (25%), Positives = 37/85 (42%), Gaps = 2/85 (2%)
Frame = -1
Query: 378 SVPASPMGGSSTAPSRLQQHPYVF--QLPASFALWAP*PGHSLPIKGGAPPKPLRWMVKQ 205
S+ +SP G + +PS P++F Q+P + L PP ++W Q
Sbjct: 45 SMSSSPPGSPARSPS-----PFLFAPQVPVA----------PLQRANAPPPNNIQWNQSQ 89
Query: 204 GSRF*RRKVFKSQDGKGIPPVLYWN 130
+VF + +GIP ++ WN
Sbjct: 90 -------RVFDNPPEQGIPTIITWN 107
>emb|CAB64718.1| (AJ132315) AKIN gamma [Arabidopsis thaliana]
Length = 284
Score = 28.9 bits (63), Expect = 9.7
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -1
Query: 378 SVPASPMGGSSTAPSRLQQHPYVF--QLPASFALWAP*PGHSLPI-KGGAPPKP--LRWM 214
S+ +SP G + +PS P++F Q+P + P+ + APP P ++W
Sbjct: 45 SMSSSPPGSPARSPS-----PFLFAPQVPVA------------PLQRANAPPSPNNIQWN 87
Query: 213 VKQGSRF*RRKVFKSQDGKGIPPVLYWN 130
Q +VF + +GIP ++ WN
Sbjct: 88 QSQ-------RVFDNPPEQGIPTIITWN 108
>gb|AAL69951.1| (AF464895) lipoxygenase [Oryza sativa]
Length = 387
Score = 28.9 bits (63), Expect = 9.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 357 GGSSTAPSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKP 226
G PS Q+H V++ A+ L P G+ P+ GG+P +P
Sbjct: 160 GDHQQGPS--QEHDRVYRFAAATDLGEPDSGNPRPVLGGSPGRP 201
>pir||I52685 gene MM1 protein - human (fragment)
gb|AAB33781.1| (S76730) clone MM1 product [Homo sapiens]
Length = 349
Score = 28.9 bits (63), Expect = 9.7
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = -1
Query: 339 PSRLQQHPYVFQLPASFALWA---P*PGHSLPIKGGAPPKP 226
P +QHPY Q P W+ P G LP GG P P
Sbjct: 169 PVEARQHPYALQCPG----WSHPHPVQGGGLPAAGGQPAGP 205
>ref|XP_035235.1| (XM_035235) rhotekin [Homo sapiens]
Length = 563
Score = 28.9 bits (63), Expect = 9.7
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -1
Query: 387 PTCSVPASPMGGSSTAPSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKPLR 220
P P SP +S AP+ HP + P +F+L A P HS + AP P R
Sbjct: 490 PALPNPCSP---ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQR 542
>gb|AAF78928.1|AF255446_1 (AF255446) Dip1-associated protein C [Crypthecodinium cohnii]
Length = 471
Score = 28.9 bits (63), Expect = 9.7
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Frame = -1
Query: 372 PASPMGGSSTAPSRLQQHPYVFQLP-----------ASFALWAP*PGHSLPIKGGAPPKP 226
P P G S+TAP+ Q P LP S P P S P+ GAPP P
Sbjct: 10 PPRPPGPSTTAPAPAGQPPLPAGLPPLPGGDPPLPTGSATSSPPLPSGSPPLPQGAPPVP 69
>gb|AAL16767.1|AF049227_1 (AF049227) RTKN [Homo sapiens]
Length = 544
Score = 28.9 bits (63), Expect = 9.7
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -1
Query: 387 PTCSVPASPMGGSSTAPSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKPLR 220
P P SP +S AP+ HP + P +F+L A P HS + AP P R
Sbjct: 471 PALPNPCSP---ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQR 523
>gb|AAH04558.1|AAH04558 (BC004558) Similar to rhotekin [Homo sapiens]
Length = 587
Score = 28.9 bits (63), Expect = 9.7
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -1
Query: 387 PTCSVPASPMGGSSTAPSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKPLR 220
P P SP +S AP+ HP + P +F+L A P HS + AP P R
Sbjct: 514 PALPNPCSP---ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQR 566
>pir||T00093 hypothetical protein KIAA0467 - human (fragment)
dbj|BAA32312.1| (AB007936) KIAA0467 protein [Homo sapiens]
Length = 2055
Score = 28.9 bits (63), Expect = 9.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 399 SHGLPTCSVPASPMGGSSTAPSR 331
S G+P S+P P GGS PSR
Sbjct: 411 SEGVPLISLPRVPQGGSQPGPSR 433
>ref|NP_149035.1| (NM_033046) rhotekin [Homo sapiens]
gb|AAH17727.1|AAH17727 (BC017727) Similar to rhotekin [Homo sapiens]
Length = 550
Score = 28.9 bits (63), Expect = 9.7
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -1
Query: 387 PTCSVPASPMGGSSTAPSRLQQHPYVFQLPASFALWAP*PGHSLPIKGGAPPKPLR 220
P P SP +S AP+ HP + P +F+L A P HS + AP P R
Sbjct: 477 PALPNPCSP---ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQR 529
>ref|NP_037448.1| (NM_013316) CCR4-NOT transcription complex, subunit; CCR4-NOT
transcription complex, subunit 4; NOT4 (negative
regulator of transcription 4, yeast) homolog [Homo
sapiens]
gb|AAD00179.1| (U71267) potential transcriptional repressor NOT4Hp [Homo sapiens]
Length = 642
Score = 28.9 bits (63), Expect = 9.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 360 MGGSSTAPSRLQQH-PYVFQLPASFALWAP*PGHSLPIKGGAPP 232
M G S APS+ P+ Q+P A W P P S P +PP
Sbjct: 573 MDGPSAAPSQTHHSAPFSTQIPLHRASWNPYPPPSNPSSFHSPP 616
>ref|XP_045804.1| (XM_045804) CCR4-NOT transcription complex, subunit [Homo sapiens]
Length = 642
Score = 28.9 bits (63), Expect = 9.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 360 MGGSSTAPSRLQQH-PYVFQLPASFALWAP*PGHSLPIKGGAPP 232
M G S APS+ P+ Q+P A W P P S P +PP
Sbjct: 573 MDGPSAAPSQTHHSAPFSTQIPLHRASWNPYPPPSNPSSFHSPP 616
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,048,560
Number of Sequences: 907641
Number of extensions: 6218270
Number of successful extensions: 14875
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 14231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14857
length of database: 284,333,007
effective HSP length: 116
effective length of database: 179,046,651
effective search space used: 4297119624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)