TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1605_A01_A01ZS5.se
q
(393 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A3F08NP.R1 a3f08np.r1 25 0.69
A1B07NP.R1 a1b07np.r1 25 0.69
A1H02NP.R1 a1h02np.r1 25 0.69
C4F04NP.R1 c4f04np.r1 25 0.94
A9A06NP.R1 a9a06np.r1 25 0.94
C3B09NP.R1 c3b09np.r1 24 1.8
B4C02NP.R1 b4c02np.r1 24 2.4
A1D01NP.R1 a1d01np.r1 24 2.4
A1B04NP.R1 a1b04np.r1 24 2.4
A7D08NP.R1 a7d08np.r1 24 2.4
A3G03NP.R1 a3g03np.r1 23 3.4
B7D12NP.R1 b7d12np.r1 23 3.4
B5F06NP.R1 b5f06np.r1 23 3.4
B3B05NP.F1 b3b05np.f1 23 3.4
A7B06NP.R1 a7b06np.r1 23 3.4
C3D05NP.F1 c3d05np.f1 23 4.6
C2H11NP.R1 c2h11np.r1 23 4.6
B3B02NP.R1 b3b02np.r1 23 4.6
B1A02NP.R1 b1a02np.r1 22 6.3
A1B10NP.F1 a1b10np.f1 22 6.3
A7H07NP.F1 a7h07np.f1 22 8.7
A2A05NP.R1 a2a05np.r1 22 8.7
B1H04NP.R1 b1h04np.r1 22 8.7
A8E04NP.R1 a8e04np.r1 22 8.7
C2G10NP.R1 c2g10np.r1 22 8.7
>A3F08NP.R1 a3f08np.r1
Length = 538
Score = 25.3 bits (49), Expect = 0.69
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2 / +1
Query: 380 NVPLSLPPRVGIG*FARLLPSLDVVAV 300
++P S PPR ARLLPSL V++
Sbjct: 457 SLPPSAPPRSPPPVLARLLPSLAPVSL 537
>A1B07NP.R1 a1b07np.r1
Length = 540
Score = 25.3 bits (49), Expect = 0.69
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2 / +3
Query: 380 NVPLSLPPRVGIG*FARLLPSLDVVAV 300
++P S PPR ARLLPSL V++
Sbjct: 459 SLPPSAPPRSPPPVLARLLPSLAPVSL 539
>A1H02NP.R1 a1h02np.r1
Length = 578
Score = 25.3 bits (49), Expect = 0.69
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2 / +2
Query: 380 NVPLSLPPRVGIG*FARLLPSLDVVAV 300
++P S PPR ARLLPSL V++
Sbjct: 440 SLPPSAPPRSPPPVLARLLPSLAPVSL 520
>C4F04NP.R1 c4f04np.r1
Length = 442
Score = 24.9 bits (48), Expect = 0.94
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1 / +2
Query: 304 ATTSKEGSRRANYPIPTRGG 363
+TTS GSRR + P P G
Sbjct: 239 STTSSYGSRRVSLPNPETSG 298
>A9A06NP.R1 a9a06np.r1
Length = 495
Score = 24.9 bits (48), Expect = 0.94
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3 / +1
Query: 303 GYYIQGRQQARKLPNPDTG 359
GY Q R +LP P+TG
Sbjct: 211 GYSCQARGDMDRLPGPETG 267
>C3B09NP.R1 c3b09np.r1
Length = 536
Score = 24.0 bits (46), Expect = 1.8
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1 / +1
Query: 183 GARPCDSRSYHESPVSPGGH 124
G PC R H S S GH
Sbjct: 376 GTCPCLLRCPHLSTCSHKGH 435
>B4C02NP.R1 b4c02np.r1
Length = 583
Score = 23.5 bits (45), Expect = 2.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3 / -2
Query: 373 HCHYLPVSGLGNLRACCLP 317
+CH+L S G R LP
Sbjct: 534 YCHHLISSARGQGRGGRLP 478
>A1D01NP.R1 a1d01np.r1
Length = 493
Score = 23.5 bits (45), Expect = 2.4
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = +2 / +2
Query: 281 PEKEPEKRLLHPR 319
P +EP R LHPR
Sbjct: 371 PRREPPLRRLHPR 409
>A1B04NP.R1 a1b04np.r1
Length = 578
Score = 23.5 bits (45), Expect = 2.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3 / -2
Query: 373 HCHYLPVSGLGNLRACCLP 317
+CH+L S G R LP
Sbjct: 436 YCHHLISSARGQGRGGRLP 380
>A7D08NP.R1 a7d08np.r1
Length = 566
Score = 23.5 bits (45), Expect = 2.4
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = +2 / -3
Query: 230 GIGQTWLQRVTEG 268
GIG W+QR EG
Sbjct: 441 GIGDRWIQRGQEG 403
>A3G03NP.R1 a3g03np.r1
Length = 465
Score = 23.1 bits (44), Expect = 3.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3 / -1
Query: 196 MNHRRRKAMRFEELS 152
M HRRR+A+ E LS
Sbjct: 171 MGHRRRRALSRETLS 127
>B7D12NP.R1 b7d12np.r1
Length = 456
Score = 23.1 bits (44), Expect = 3.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1 / -3
Query: 232 YWPNMVA 252
YWPNMVA
Sbjct: 151 YWPNMVA 131
Score = 21.7 bits (41), Expect = 8.7
Identities = 5/7 (71%), Positives = 7/7 (99%)
Frame = -1 / +2
Query: 249 NHVWPIP 229
+HVWP+P
Sbjct: 134 HHVWPVP 154
>B5F06NP.R1 b5f06np.r1
Length = 477
Score = 23.1 bits (44), Expect = 3.4
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = -1 / +3
Query: 246 HVWPIPKH 223
H WP+P+H
Sbjct: 144 HCWPLPRH 167
>B3B05NP.F1 b3b05np.f1
Length = 576
Score = 23.1 bits (44), Expect = 3.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1 / +3
Query: 172 WPCAGDGSFKFLP 210
WPC DG+ +P
Sbjct: 39 WPCTNDGTLICIP 77
>A7B06NP.R1 a7b06np.r1
Length = 563
Score = 23.1 bits (44), Expect = 3.4
Identities = 6/16 (37%), Positives = 9/16 (55%)
Frame = -3 / +3
Query: 373 HCHYLPVSGLGNLRAC 326
H +LP+ +G L C
Sbjct: 150 HLDHLPLFSIGALSPC 197
>C3D05NP.F1 c3d05np.f1
Length = 494
Score = 22.6 bits (43), Expect = 4.6
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +1 / -3
Query: 160 PRIAWPCAGDG 192
P+ WPC G G
Sbjct: 180 PQEGWPCPGQG 148
>C2H11NP.R1 c2h11np.r1
Length = 461
Score = 22.6 bits (43), Expect = 4.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1 / +3
Query: 148 FMITPRIAWPC 180
F TPR WPC
Sbjct: 234 FWKTPRTDWPC 266
>B3B02NP.R1 b3b02np.r1
Length = 564
Score = 22.6 bits (43), Expect = 4.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3 / -1
Query: 370 CHYLPVSGLG 341
C Y+P SGLG
Sbjct: 348 CQYIPSSGLG 319
>B1A02NP.R1 b1a02np.r1
Length = 425
Score = 22.1 bits (42), Expect = 6.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1 / -3
Query: 381 KCSIVTTSPCRDWVICAPA 325
+ SIV S R + CAPA
Sbjct: 402 RSSIVVASTSRPKICCAPA 346
>A1B10NP.F1 a1b10np.f1
Length = 587
Score = 22.1 bits (42), Expect = 6.3
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = -3 / -2
Query: 112 LINTSLPKSGFLACISSRITTV 47
L+ SLP SG C+S+ T++
Sbjct: 373 LMKKSLPASGRARCLSAADTSM 308
>A7H07NP.F1 a7h07np.f1
Length = 544
Score = 21.7 bits (41), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (49%)
Frame = +3 / +2
Query: 78 KNPDFGRDVFIRLKTNALRGSLVIHDNS 161
K+PD GR V N+ +LV NS
Sbjct: 146 KHPDAGRQVIPVSMENSRLSALVS*KNS 229
>A2A05NP.R1 a2a05np.r1
Length = 484
Score = 21.7 bits (41), Expect = 8.7
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = +1 / -1
Query: 121 PMPSGAH 141
PMP+ AH
Sbjct: 124 PMPARAH 104
>B1H04NP.R1 b1h04np.r1
Length = 525
Score = 21.7 bits (41), Expect = 8.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1 / -1
Query: 319 EGSRRANYPIPTRGGSD 369
EGSRR YP G +
Sbjct: 159 EGSRRRGYPKALEGAEE 109
>A8E04NP.R1 a8e04np.r1
Length = 466
Score = 21.7 bits (41), Expect = 8.7
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = -3 / -2
Query: 358 PVSGLGNLRACCLPW 314
PVSGLG + C W
Sbjct: 135 PVSGLGGRKNCDGDW 91
>C2G10NP.R1 c2g10np.r1
Length = 235
Score = 21.7 bits (41), Expect = 8.7
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +1 / +2
Query: 157 TPRIAWPC 180
TPR WPC
Sbjct: 5 TPRTDWPC 28
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1130983
Number of Sequences: 2682
Number of extensions: 13887
Number of successful extensions: 444
Number of sequences better than 10.0: 27
length of query: 131
length of database: 382,504
effective HSP length: 37
effective length of query: 93
effective length of database: 283,270
effective search space: 26344110
effective search space used: 26344110
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 41 (21.7 bits)