BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1605_B05_C09ZS5.se
q
(388 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B2B09NP.R1 b2b09np.r1 182 4e-47
A7G05NP.F1 a7g05np.f1 78 2e-15
A6F05NP.R1 a6f05np.r1 30 0.33
B3H04NP.F1 b3h04np.f1 28 1.3
B2D09NP.R1 b2d09np.r1 28 1.3
A7C03NP.R1 a7c03np.r1 28 1.3
A6G10NP.R1 a6g10np.r1 28 1.3
C4G01NP.R1 c4g01np.r1 26 5.2
C3G01NP.R1 c3g01np.r1 26 5.2
C1G05NP.R1 c1g05np.r1 26 5.2
C1B09NP.R1 c1b09np.r1 26 5.2
C1A04NP.F1 c1a04np.f1 26 5.2
B8H06NP.R1 b8h06np.r1 26 5.2
B6F11NP.F1 b6f11np.f1 26 5.2
B2H08NP.R1 b2h08np.r1 26 5.2
B1G12NP.F1 b1g12np.f1 26 5.2
B1G10NP.R1 b1g10np.r1 26 5.2
A9G11NP.R1 a9g11np.r1 26 5.2
A7C05NP.R1 a7c05np.r1 26 5.2
A7C05NP.F1 a7c05np.f1 26 5.2
A4H02NP.F1 a4h02np.f1 26 5.2
A4G08NP.R1 a4g08np.r1 26 5.2
A3F12NP.R1 a3f12np.r1 26 5.2
A3A10NP.F1 a3a10np.f1 26 5.2
A3A06NP.F1 a3a06np.f1 26 5.2
A2H06NP.R1 a2h06np.r1 26 5.2
>B2B09NP.R1 b2b09np.r1
Length = 519
Score = 182 bits (92), Expect = 4e-47
Identities = 224/268 (83%)
Strand = Plus / Plus
Query: 5 ggtgtcaccaccctcgacatcgtccgtgccgagaccttcgttgctgagatcactggcaag 64
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 239 ggtgtcaccaccctcgatattgtccgtgccgagaccttcgttgctgagattgctggcaat 298
Query: 65 gccaacccccaggagctgaccatccccgtcattggtggtcactctggcgagactattgtt 124
||||||||||||||| |||||||||| ||||| ||||| |||||||| || |||
Sbjct: 299 agcaacccccaggagctcgttgtccccgtcatcggtgggcactccggcgagaccatcgtt 358
Query: 125 cccctcttcagcaaggcctctccttcagttcagatccccgacgacaagtacgatgctctc 184
|| ||||||||||||| || || || || ||||| ||||||||||||||||||||
Sbjct: 359 cctctcttcagcaaggtgtccccctcggtcaccatccctgacgacaagtacgatgctctt 418
Query: 185 gtaaaccgcattcagttcggcggtgacgaagttgtcaaggccaaggacggtgctggttcc 244
|| |||||| | |||||||| ||||| || || |||||||||||||| ||| || ||
Sbjct: 419 gtcaaccgcgtccagttcggtggtgatgaggtcgtcaaggccaaggagggtctcggctct 478
Query: 245 gccaccctgtccatggcctatgccggtt 272
|||||||| |||||||| ||||||||||
Sbjct: 479 gccaccctctccatggcttatgccggtt 506
>A7G05NP.F1 a7g05np.f1
Length = 438
Score = 77.8 bits (39), Expect = 2e-15
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 247 caccctgtccatggcctatgccggtttccgattcgccgagaaggttctccgtgccgtcaa 306
|||||| |||||||| |||||||||| || ||||| |||||| | ||| |||| |||
Sbjct: 438 caccctctccatggcttatgccggttatcgcttcgctgagaagctcctcaaggccgccaa 379
Query: 307 gggcgagaagggccttgttgagcccanctacgtctaccttcccggtgttcccgg 360
||||| ||||||||||| ||||||| ||||||||| || |||||| |||||||
Sbjct: 378 gggcgccaagggccttgtcgagcccacctacgtctatctccccggtattcccgg 325
>A6F05NP.R1 a6f05np.r1
Length = 542
Score = 30.2 bits (15), Expect = 0.33
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 gttcggcggtgacga 213
|||||||||||||||
Sbjct: 195 gttcggcggtgacga 181
>B3H04NP.F1 b3h04np.f1
Length = 481
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 tcagcaaggcctct 145
||||||||||||||
Sbjct: 417 tcagcaaggcctct 430
>B2D09NP.R1 b2d09np.r1
Length = 526
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 ccccgtcattggtg 101
||||||||||||||
Sbjct: 369 ccccgtcattggtg 382
>A7C03NP.R1 a7c03np.r1
Length = 494
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 303 tcaagggcgagaag 316
||||||||||||||
Sbjct: 367 tcaagggcgagaag 380
>A6G10NP.R1 a6g10np.r1
Length = 335
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 298 tgccgtcaagggcg 311
||||||||||||||
Sbjct: 118 tgccgtcaagggcg 131
>C4G01NP.R1 c4g01np.r1
Length = 480
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 37 gaccttcgttgct 49
|||||||||||||
Sbjct: 401 gaccttcgttgct 413
>C3G01NP.R1 c3g01np.r1
Length = 460
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 341 taccttcccggtg 353
|||||||||||||
Sbjct: 146 taccttcccggtg 158
>C1G05NP.R1 c1g05np.r1
Length = 437
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 201 tcggcggtgacga 213
|||||||||||||
Sbjct: 300 tcggcggtgacga 312
>C1B09NP.R1 c1b09np.r1
Length = 507
Score = 26.3 bits (13), Expect = 5.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 53 atcactggcaaggccaa 69
|||||||||||| ||||
Sbjct: 145 atcactggcaagtccaa 161
>C1A04NP.F1 c1a04np.f1
Length = 491
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 57 ctggcaaggccaa 69
|||||||||||||
Sbjct: 436 ctggcaaggccaa 424
>B8H06NP.R1 b8h06np.r1
Length = 456
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 94 cattggtggtcac 106
|||||||||||||
Sbjct: 254 cattggtggtcac 242
>B6F11NP.F1 b6f11np.f1
Length = 264
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 57 ctggcaaggccaa 69
|||||||||||||
Sbjct: 232 ctggcaaggccaa 220
>B2H08NP.R1 b2h08np.r1
Length = 482
Score = 26.3 bits (13), Expect = 5.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 53 atcactggcaaggccaa 69
|||||||||||| ||||
Sbjct: 313 atcactggcaagtccaa 329
>B1G12NP.F1 b1g12np.f1
Length = 560
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 348 ccggtgttcccgg 360
|||||||||||||
Sbjct: 420 ccggtgttcccgg 408
>B1G10NP.R1 b1g10np.r1
Length = 468
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 161 cccgacgacaagt 173
|||||||||||||
Sbjct: 175 cccgacgacaagt 187
>A9G11NP.R1 a9g11np.r1
Length = 333
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 305 aagggcgagaagg 317
|||||||||||||
Sbjct: 132 aagggcgagaagg 120
>A7C05NP.R1 a7c05np.r1
Length = 519
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 57 ctggcaaggccaa 69
|||||||||||||
Sbjct: 459 ctggcaaggccaa 471
>A7C05NP.F1 a7c05np.f1
Length = 481
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 57 ctggcaaggccaa 69
|||||||||||||
Sbjct: 441 ctggcaaggccaa 429
>A4H02NP.F1 a4h02np.f1
Length = 405
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 285 agaaggttctccg 297
|||||||||||||
Sbjct: 352 agaaggttctccg 340
>A4G08NP.R1 a4g08np.r1
Length = 553
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 126 ccctcttcagcaa 138
|||||||||||||
Sbjct: 34 ccctcttcagcaa 46
>A3F12NP.R1 a3f12np.r1
Length = 550
Score = 26.3 bits (13), Expect = 5.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 53 atcactggcaaggccaa 69
|||||||||||| ||||
Sbjct: 22 atcactggcaagtccaa 38
>A3A10NP.F1 a3a10np.f1
Length = 411
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 307 gggcgagaagggc 319
|||||||||||||
Sbjct: 239 gggcgagaagggc 251
>A3A06NP.F1 a3a06np.f1
Length = 546
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 221 aaggccaaggacg 233
|||||||||||||
Sbjct: 427 aaggccaaggacg 415
>A2H06NP.R1 a2h06np.r1
Length = 460
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 59 ggcaaggccaacc 71
|||||||||||||
Sbjct: 392 ggcaaggccaacc 404
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 348
Number of Sequences: 2682
Number of extensions: 348
Number of successful extensions: 80
Number of sequences better than 10.0: 26
length of query: 388
length of database: 1,147,514
effective HSP length: 14
effective length of query: 374
effective length of database: 1,109,966
effective search space: 415127284
effective search space used: 415127284
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)