BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1605_B11_C21ZS5.se
q
(473 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A6F05NP.R1 a6f05np.r1 30 0.41
A3F05NP.F1 a3f05np.f1 30 0.41
B7G09NP.R1 b7g09np.r1 28 1.6
C5B02NP.R1 c5b02np.r1 26 6.3
C3E03NP.R1 c3e03np.r1 26 6.3
C3D11NP.R1 c3d11np.r1 26 6.3
C2B01NP.R1 c2b01np.r1 26 6.3
B7B02NP.R1 b7b02np.r1 26 6.3
B7A03NP.R1 b7a03np.r1 26 6.3
B2C06NP.R1 b2c06np.r1 26 6.3
B1F02NP.R1 b1f02np.r1 26 6.3
A6C10NP.R1 a6c10np.r1 26 6.3
A3H05NP.R1 a3h05np.r1 26 6.3
A3F07NP.R1 a3f07np.r1 26 6.3
A3C11NP.R1 a3c11np.r1 26 6.3
A1F11NP.R1 a1f11np.r1 26 6.3
A1B11NP.F1 a1b11np.f1 26 6.3
>A6F05NP.R1 a6f05np.r1
Length = 542
Score = 30.2 bits (15), Expect = 0.41
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 acctgaagaaaccga 47
|||||||||||||||
Sbjct: 375 acctgaagaaaccga 389
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 10 atatctcgaccat 22
|||||||||||||
Sbjct: 106 atatctcgaccat 118
>A3F05NP.F1 a3f05np.f1
Length = 406
Score = 30.2 bits (15), Expect = 0.41
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 344 aatcttctatctact 358
|||||||||||||||
Sbjct: 370 aatcttctatctact 356
>B7G09NP.R1 b7g09np.r1
Length = 427
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 342 tcaatcttctatct 355
||||||||||||||
Sbjct: 85 tcaatcttctatct 98
>C5B02NP.R1 c5b02np.r1
Length = 310
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 43 ctatcgacattgc 55
>C3E03NP.R1 c3e03np.r1
Length = 524
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 38 ctatcgacattgc 50
>C3D11NP.R1 c3d11np.r1
Length = 523
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 391 cctatcgacattg 403
|||||||||||||
Sbjct: 90 cctatcgacattg 102
>C2B01NP.R1 c2b01np.r1
Length = 247
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 41 ctatcgacattgc 53
>B7B02NP.R1 b7b02np.r1
Length = 492
Score = 26.3 bits (13), Expect = 6.3
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 339 cagtcaatcttctatct 355
|||||||||||| ||||
Sbjct: 142 cagtcaatcttccatct 158
>B7A03NP.R1 b7a03np.r1
Length = 604
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 59 ctatcgacattgc 71
>B2C06NP.R1 b2c06np.r1
Length = 480
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 45 ctatcgacattgc 57
>B1F02NP.R1 b1f02np.r1
Length = 483
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 43 ctatcgacattgc 55
>A6C10NP.R1 a6c10np.r1
Length = 443
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 3 ctatcgacattgc 15
>A3H05NP.R1 a3h05np.r1
Length = 508
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 93 atgttgtaccggt 105
|||||||||||||
Sbjct: 328 atgttgtaccggt 316
>A3F07NP.R1 a3f07np.r1
Length = 456
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 422 ctatcgacattgc 434
>A3C11NP.R1 a3c11np.r1
Length = 475
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 46 ctatcgacattgc 58
>A1F11NP.R1 a1f11np.r1
Length = 554
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 ctatcgacattgc 404
|||||||||||||
Sbjct: 35 ctatcgacattgc 47
>A1B11NP.F1 a1b11np.f1
Length = 392
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 67 gctgctctcaaca 79
|||||||||||||
Sbjct: 205 gctgctctcaaca 217
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 258
Number of Sequences: 2682
Number of extensions: 258
Number of successful extensions: 51
Number of sequences better than 10.0: 17
length of query: 473
length of database: 1,147,514
effective HSP length: 14
effective length of query: 459
effective length of database: 1,109,966
effective search space: 509474394
effective search space used: 509474394
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)