TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1605_B11_C21ZS5.se
q
(473 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A5H05NP.R1 a5h05np.r1 26 0.64
B2G05NP.R1 b2g05np.r1 25 0.89
B2H03NP.R1 b2h03np.r1 25 0.89
B1E01NP.F1 b1e01np.f1 24 1.2
A9F03NP.R1 a9f03np.r1 24 2.3
B8B12NP.F1 b8b12np.f1 24 2.3
C3C09NP.R1 c3c09np.r1 24 2.3
A9C05NP.R1 a9c05np.r1 24 2.3
B7C10NP.R1 b7c10np.r1 24 2.3
A2D01NP.R1 a2d01np.r1 23 3.0
A9H03NP.R1 a9h03np.r1 24 3.2
C1E06NP.R1 c1e06np.r1 24 3.2
A7C06NP.F1 a7c06np.f1 24 3.2
A9A03NP.R1 a9a03np.r1 23 4.3
A7H06NP.R1 a7h06np.r1 23 4.3
A9D06NP.F1 a9d06np.f1 23 4.3
B2A01NP.R1 b2a01np.r1 23 4.3
C1C02NP.R1 c1c02np.r1 23 6.0
C5C10NP.R1 c5c10np.r1 23 6.0
B4A06NP.F1 b4a06np.f1 23 6.0
A9F03NP.F1 a9f03np.f1 21 7.2
B2F08NP.F1 b2f08np.f1 22 8.2
A3B11NP.R1 a3b11np.r1 22 8.2
C4C10NP.F1 c4c10np.f1 22 8.2
B5H01NP.F1 b5h01np.f1 22 8.2
B5F10NP.R1 b5f10np.r1 22 8.2
C3H09NP.R1 c3h09np.r1 22 8.2
A7H02NP.F1 a7h02np.f1 22 8.2
A7C09NP.R1 a7c09np.r1 22 8.2
A3D06NP.R1 a3d06np.r1 22 8.2
B3G06NP.F1 b3g06np.f1 22 8.2
A4B02NP.R1 a4b02np.r1 22 8.2
A3D06NP.F1 a3d06np.f1 22 8.2
>A5H05NP.R1 a5h05np.r1
Length = 532
Score = 25.8 bits (50), Expect = 0.64
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1 / -3
Query: 52 YCDLLAALNNRGMLCCTGVSRKFSSSLLATHG 147
YC L+ NR ++ C +R + THG
Sbjct: 101 YCALIITRQNR*LVFCPCSARSADGKPIVTHG 6
>B2G05NP.R1 b2g05np.r1
Length = 515
Score = 25.3 bits (49), Expect = 0.89
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2 / -2
Query: 338 PVNLLSTCIHYLYASLRYLSTLPQSLFGSIR 430
P+++ TC+H + SLR P SIR
Sbjct: 466 PMSVCCTCLHIVAGSLRIRLASPPGPVPSIR 374
>B2H03NP.R1 b2h03np.r1
Length = 522
Score = 25.3 bits (49), Expect = 0.89
Identities = 13/51 (25%), Positives = 22/51 (42%)
Frame = -1 / -1
Query: 170 TTEMHLSAPCVASKLELNFRETPVQHSMPRLLRAANRSQYKSVSSGCFGNG 18
TT +P + +L FR++ V R ++ + SGC G+G
Sbjct: 480 TTSCPGRSPAASGGADLGFRQSWVHEPCQGEHRQSSSQKESGSDSGCCGHG 328
>B1E01NP.F1 b1e01np.f1
Length = 472
Score = 24.0 bits (46), Expect(2) = 1.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 191 SRDRSSRIAGHV 226
SRDRSSR+ G+V
Sbjct: 294 SRDRSSRLEGYV 259
Score = 19.8 bits (37), Expect(2) = 1.2
Identities = 6/25 (24%), Positives = 12/25 (48%)
Frame = +1 / -1
Query: 349 SIYLHTLPICLSKVPIDIAPKPIWI 423
S Y H++ + + +DI W+
Sbjct: 133 SCYGHSVTLFIVHSVVDIVEGSCWL 59
>A9F03NP.R1 a9f03np.r1
Length = 486
Score = 24.0 bits (46), Expect = 2.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1 / +1
Query: 340 SQSSIYLHTLPICLSKVPIDIAPKP 414
S++ I ++ LS+ P+D+AP P
Sbjct: 100 SKARIIINNSRDPLSRAPVDVAPLP 174
>B8B12NP.F1 b8b12np.f1
Length = 341
Score = 24.0 bits (46), Expect = 2.3
Identities = 10/28 (35%), Positives = 14/28 (49%)
Frame = -1 / +2
Query: 158 HLSAPCVASKLELNFRETPVQHSMPRLL 75
H S PC + R+T + MP+LL
Sbjct: 44 HSSRPCPSDGSWYASRKTTINKQMPKLL 127
>C3C09NP.R1 c3c09np.r1
Length = 513
Score = 24.0 bits (46), Expect = 2.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2 / +3
Query: 140 HMERIDASPSCDYTKSFSRDRSSRIAGHVSVL 235
H E A+PSC R +R AG VL
Sbjct: 222 HSEPRTAAPSCSLVSQKYR*YFARKAGQQDVL 317
>A9C05NP.R1 a9c05np.r1
Length = 403
Score = 24.0 bits (46), Expect = 2.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -1 / -2
Query: 425 SIQIGFGAMSIGTLERHIGSV 363
++ G + +G L RH G V
Sbjct: 90 TVDSGLLSEEVGELARHFGEV 28
>B7C10NP.R1 b7c10np.r1
Length = 462
Score = 24.0 bits (46), Expect = 2.3
Identities = 7/19 (36%), Positives = 13/19 (67%)
Frame = +3 / +2
Query: 174 IIPSPSLETGHLELRVMFQ 230
++P P L+ GH +R+ F+
Sbjct: 287 LVPRPRLQPGHFGIRLGFR 343
>A2D01NP.R1 a2d01np.r1
Length = 490
Score = 22.6 bits (43), Expect(2) = 3.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2 / +3
Query: 116 SSARVCLRHMERIDASPSCDYTKSF 190
++ R C RH+ R P+C+ + F
Sbjct: 372 AALRHCARHLWRRGLYPACESAELF 446
Score = 19.8 bits (37), Expect(2) = 3.0
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +3 / +2
Query: 69 CSQQSRHAMLYRCFT 113
CS ++R +L CF+
Sbjct: 248 CSPRARSTLLCSCFS 292
>A9H03NP.R1 a9h03np.r1
Length = 470
Score = 23.5 bits (45), Expect = 3.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3 / -1
Query: 132 ACDTWSG*MHLRRAIIPSPS 191
+CD W + RRA+ P P+
Sbjct: 179 SCDRWYRRLRRRRALWPRPN 120
>C1E06NP.R1 c1e06np.r1
Length = 472
Score = 23.5 bits (45), Expect = 3.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1 / -1
Query: 52 YCDLLAALNNRGMLCCTGV 108
YCD++ + R L C GV
Sbjct: 265 YCDMVGDVAARSALVCEGV 209
>A7C06NP.F1 a7c06np.f1
Length = 389
Score = 23.5 bits (45), Expect = 3.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +2 / +3
Query: 257 RIWPRHLNYCFDI 295
R++P H ++C DI
Sbjct: 75 RVFPMHASFCLDI 113
>A9A03NP.R1 a9a03np.r1
Length = 439
Score = 23.1 bits (44), Expect = 4.3
Identities = 9/21 (42%), Positives = 12/21 (56%)
Frame = +3 / -3
Query: 48 LVLRSVSCSQQSRHAMLYRCF 110
LV RS +R+ +YRCF
Sbjct: 326 LVRRSSHFGSPNRYVCVYRCF 264
>A7H06NP.R1 a7h06np.r1
Length = 398
Score = 23.1 bits (44), Expect = 4.3
Identities = 12/34 (35%), Positives = 14/34 (40%)
Frame = +2 / +1
Query: 134 LRHMERIDASPSCDYTKSFSRDRSSRIAGHVSVL 235
+R + S C Y S DRS R G S L
Sbjct: 220 IRMLGEASLSDGCSYQSISSADRSPRRHGTTSSL 321
>A9D06NP.F1 a9d06np.f1
Length = 452
Score = 23.1 bits (44), Expect = 4.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1 / -2
Query: 10 ISRPFPKQPEETDLYCDLL 66
I RP P+QP E ++ +L
Sbjct: 340 IRRPVPRQPSEAEVCLAML 284
>B2A01NP.R1 b2a01np.r1
Length = 496
Score = 23.1 bits (44), Expect = 4.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3 / -3
Query: 141 CRKQTRAELP 112
CRKQTR LP
Sbjct: 494 CRKQTRRRLP 465
>C1C02NP.R1 c1c02np.r1
Length = 442
Score = 22.6 bits (43), Expect = 6.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 344 NLLSTCIHYLYASLRYLSTLPQSLF 418
+LLS+C ++ LRY+++ S F
Sbjct: 147 SLLSSCDYHSKYPLRYVTSASSSTF 221
>C5C10NP.R1 c5c10np.r1
Length = 479
Score = 22.6 bits (43), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1 / -2
Query: 196 RQVI*NCGSCFSP*KEGCLNTNMA 267
RQV+* GS F *KE C+ A
Sbjct: 130 RQVL*FGGSPFK**KEKCITAGSA 59
>B4A06NP.F1 b4a06np.f1
Length = 419
Score = 22.6 bits (43), Expect = 6.0
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = -3 / -2
Query: 405 GNVDRYLREAYR*CMQVDRRLT 340
GNV +YLR R +++ R T
Sbjct: 121 GNVSKYLRPVLRKLAELESRQT 56
>A9F03NP.F1 a9f03np.f1
Length = 499
Score = 20.8 bits (39), Expect(2) = 7.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 173 RTTEMHLSAPCVASK 129
RTT MHL +ASK
Sbjct: 60 RTT*MHLRNKVIASK 104
Score = 20.3 bits (38), Expect(2) = 7.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 98 QHSMPRLLRAANRSQ 54
+HS+P L +R+Q
Sbjct: 273 RHSLPLSLLGQDRNQ 317
>B2F08NP.F1 b2f08np.f1
Length = 490
Score = 22.1 bits (42), Expect = 8.2
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -2 / +1
Query: 451 SRRYMGISNRSK 416
+RRY GISNR +
Sbjct: 223 ARRYNGISNRKE 258
>A3B11NP.R1 a3b11np.r1
Length = 441
Score = 22.1 bits (42), Expect = 8.2
Identities = 11/31 (35%), Positives = 14/31 (44%)
Frame = -1 / -1
Query: 107 TPVQHSMPRLLRAANRSQYKSVSSGCFGNGR 15
TP++ SM R R GC G+GR
Sbjct: 399 TPLRRSMCRFWVTRARLMRWIPRKGCVGSGR 307
>C4C10NP.F1 c4c10np.f1
Length = 480
Score = 22.1 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 13/23 (55%)
Frame = +1 / -3
Query: 16 RPFPKQPEETDLYCDLLAALNNR 84
RP P++ + + +L LNNR
Sbjct: 472 RPLPRKCRKAE*SLSILGCLNNR 404
>B5H01NP.F1 b5h01np.f1
Length = 488
Score = 22.1 bits (42), Expect = 8.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 223 MTRNSR*PVSRE 188
+TRN+R PV R+
Sbjct: 403 LTRNNRRPVLRD 368
>B5F10NP.R1 b5f10np.r1
Length = 539
Score = 22.1 bits (42), Expect = 8.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1 / +2
Query: 146 PCVASKLELNFRETPVQHSMPRLL 75
PCV + N V +PRLL
Sbjct: 98 PCVVLVAQYNKHNNVVHRHLPRLL 169
>C3H09NP.R1 c3h09np.r1
Length = 524
Score = 22.1 bits (42), Expect = 8.2
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2 / +2
Query: 104 VFHGSSARVCLRHMERI 154
++ SAR+C RH +++
Sbjct: 395 IYADISARICCRHEDKL 445
>A7H02NP.F1 a7h02np.f1
Length = 467
Score = 22.1 bits (42), Expect = 8.2
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2 / -1
Query: 104 VFHGSSARVCLRHMERI 154
++ SAR+C RH +++
Sbjct: 254 IYADISARICCRHEDKL 204
>A7C09NP.R1 a7c09np.r1
Length = 523
Score = 22.1 bits (42), Expect = 8.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2 / -1
Query: 257 RIWPRHLNYCFDILLRL 307
R WP L YC + LR+
Sbjct: 283 RCWPFLLVYCCTLCLRI 233
>A3D06NP.R1 a3d06np.r1
Length = 468
Score = 22.1 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 13/23 (55%)
Frame = +1 / +2
Query: 16 RPFPKQPEETDLYCDLLAALNNR 84
RP P++ + + +L LNNR
Sbjct: 281 RPLPRKCRKAE*SLSILGCLNNR 349
>B3G06NP.F1 b3g06np.f1
Length = 578
Score = 22.1 bits (42), Expect = 8.2
Identities = 7/16 (43%), Positives = 9/16 (55%)
Frame = -2 / +2
Query: 175 IARRRCIYPLHVSQAN 128
IA+ +CIYP N
Sbjct: 290 IAKTKCIYPTRFKMLN 337
>A4B02NP.R1 a4b02np.r1
Length = 437
Score = 22.1 bits (42), Expect = 8.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2 / -1
Query: 257 RIWPRHLNYCFDILLRL 307
R WP L YC + LR+
Sbjct: 362 RCWPFLLVYCCTLCLRI 312
>A3D06NP.F1 a3d06np.f1
Length = 494
Score = 22.1 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 13/23 (55%)
Frame = +1 / -1
Query: 16 RPFPKQPEETDLYCDLLAALNNR 84
RP P++ + + +L LNNR
Sbjct: 488 RPLPRKCRKAE*SLSILGCLNNR 420
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1344216
Number of Sequences: 2682
Number of extensions: 17370
Number of successful extensions: 495
Number of sequences better than 10.0: 33
length of query: 157
length of database: 382,504
effective HSP length: 37
effective length of query: 120
effective length of database: 283,270
effective search space: 33992400
effective search space used: 33992400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 42 (22.1 bits)