BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1605_C02_E03ZS5.se
q
(136 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B1F04NP.R1 b1f04np.r1 30 0.11
C4H03NP.R1 c4h03np.r1 28 0.43
B8A10NP.F1 b8a10np.f1 26 1.7
B4E03NP.F1 b4e03np.f1 26 1.7
A9H08NP.F1 a9h08np.f1 26 1.7
A9A07NP.R1 a9a07np.r1 26 1.7
A7H01NP.F1 a7h01np.f1 26 1.7
A7D05NP.F1 a7d05np.f1 26 1.7
A6B08NP.F1 a6b08np.f1 26 1.7
A4E07NP.F1 a4e07np.f1 26 1.7
A3F08NP.F1 a3f08np.f1 26 1.7
A2E09NP.F1 a2e09np.f1 26 1.7
A1G04NP.R1 a1g04np.r1 26 1.7
C5A10NP.R1 c5a10np.r1 24 6.7
C4A08NP.R1 c4a08np.r1 24 6.7
C3G11NP.R1 c3g11np.r1 24 6.7
C2H06NP.R1 c2h06np.r1 24 6.7
B7D10NP.R1 b7d10np.r1 24 6.7
B5B08NP.F1 b5b08np.f1 24 6.7
B1E04NP.R1 b1e04np.r1 24 6.7
A8A10NP.F1 a8a10np.f1 24 6.7
A6H05NP.F1 a6h05np.f1 24 6.7
A6G01NP.F1 a6g01np.f1 24 6.7
A6F04NP.F1 a6f04np.f1 24 6.7
A5D02NP.F1 a5d02np.f1 24 6.7
A4D03NP.R1 a4d03np.r1 24 6.7
A4D02NP.R1 a4d02np.r1 24 6.7
A3H06NP.F1 a3h06np.f1 24 6.7
A2F08NP.F1 a2f08np.f1 24 6.7
A1B05NP.F1 a1b05np.f1 24 6.7
>B1F04NP.R1 b1f04np.r1
Length = 430
Score = 30.2 bits (15), Expect = 0.11
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 ggttgaacatgaact 41
|||||||||||||||
Sbjct: 413 ggttgaacatgaact 399
>C4H03NP.R1 c4h03np.r1
Length = 427
Score = 28.2 bits (14), Expect = 0.43
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 ttggagccttgcgc 19
||||||||||||||
Sbjct: 130 ttggagccttgcgc 117
>B8A10NP.F1 b8a10np.f1
Length = 210
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 137 tgtggagttggat 125
>B4E03NP.F1 b4e03np.f1
Length = 449
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 376 tgtggagttggat 364
>A9H08NP.F1 a9h08np.f1
Length = 472
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 378 tgtggagttggat 366
>A9A07NP.R1 a9a07np.r1
Length = 504
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 119 aacatgatgggct 131
|||||||||||||
Sbjct: 212 aacatgatgggct 224
>A7H01NP.F1 a7h01np.f1
Length = 414
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 376 tgtggagttggat 364
>A7D05NP.F1 a7d05np.f1
Length = 471
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 376 tgtggagttggat 364
>A6B08NP.F1 a6b08np.f1
Length = 449
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 376 tgtggagttggat 364
>A4E07NP.F1 a4e07np.f1
Length = 436
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 377 tgtggagttggat 365
>A3F08NP.F1 a3f08np.f1
Length = 474
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 378 tgtggagttggat 366
>A2E09NP.F1 a2e09np.f1
Length = 396
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 tgtggagttggat 115
|||||||||||||
Sbjct: 302 tgtggagttggat 290
>A1G04NP.R1 a1g04np.r1
Length = 526
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 44 tgggcgaggagct 56
|||||||||||||
Sbjct: 357 tgggcgaggagct 345
>C5A10NP.R1 c5a10np.r1
Length = 532
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 48 cgaggagctcaa 59
||||||||||||
Sbjct: 492 cgaggagctcaa 503
>C4A08NP.R1 c4a08np.r1
Length = 516
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 123 tgatgggctttt 134
||||||||||||
Sbjct: 309 tgatgggctttt 298
>C3G11NP.R1 c3g11np.r1
Length = 528
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 48 cgaggagctcaa 59
||||||||||||
Sbjct: 437 cgaggagctcaa 448
>C2H06NP.R1 c2h06np.r1
Length = 452
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 83 gtgaaaatgggc 94
||||||||||||
Sbjct: 203 gtgaaaatgggc 214
>B7D10NP.R1 b7d10np.r1
Length = 499
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 48 cgaggagctcaa 59
||||||||||||
Sbjct: 329 cgaggagctcaa 340
>B5B08NP.F1 b5b08np.f1
Length = 386
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 86 aaaatgggcttt 97
||||||||||||
Sbjct: 116 aaaatgggcttt 127
>B1E04NP.R1 b1e04np.r1
Length = 492
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 121 catgatgggctt 132
||||||||||||
Sbjct: 77 catgatgggctt 66
>A8A10NP.F1 a8a10np.f1
Length = 497
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 117 ggaacatgatgg 128
||||||||||||
Sbjct: 213 ggaacatgatgg 202
>A6H05NP.F1 a6h05np.f1
Length = 444
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 82 ggtgaaaatggg 93
||||||||||||
Sbjct: 147 ggtgaaaatggg 136
>A6G01NP.F1 a6g01np.f1
Length = 523
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 104 gtggagttggat 115
||||||||||||
Sbjct: 145 gtggagttggat 134
>A6F04NP.F1 a6f04np.f1
Length = 473
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 82 ggtgaaaatggg 93
||||||||||||
Sbjct: 146 ggtgaaaatggg 135
>A5D02NP.F1 a5d02np.f1
Length = 451
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 82 ggtgaaaatggg 93
||||||||||||
Sbjct: 152 ggtgaaaatggg 141
>A4D03NP.R1 a4d03np.r1
Length = 468
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 119 aacatgatgggc 130
||||||||||||
Sbjct: 43 aacatgatgggc 32
>A4D02NP.R1 a4d02np.r1
Length = 554
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 119 aacatgatgggc 130
||||||||||||
Sbjct: 43 aacatgatgggc 32
>A3H06NP.F1 a3h06np.f1
Length = 465
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 1 tttgattggagc 12
||||||||||||
Sbjct: 72 tttgattggagc 61
>A2F08NP.F1 a2f08np.f1
Length = 523
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 45 gggcgaggagct 56
||||||||||||
Sbjct: 336 gggcgaggagct 325
>A1B05NP.F1 a1b05np.f1
Length = 525
Score = 24.3 bits (12), Expect = 6.7
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 tgaactcgtggg 47
||||||||||||
Sbjct: 313 tgaactcgtggg 324
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126
Number of Sequences: 2682
Number of extensions: 126
Number of successful extensions: 126
Number of sequences better than 10.0: 30
length of query: 136
length of database: 1,147,514
effective HSP length: 13
effective length of query: 123
effective length of database: 1,112,648
effective search space: 136855704
effective search space used: 136855704
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)