BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1605_F03_K05ZS5.se
q
(616 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A6H07NP.R1 a6h07np.r1 30 0.53
C5A02NP.R1 c5a02np.r1 28 2.1
C4G03NP.R1 c4g03np.r1 28 2.1
C1D05NP.R1 c1d05np.r1 28 2.1
B5E08NP.R1 b5e08np.r1 28 2.1
B1A01NP.F1 b1a01np.f1 28 2.1
A9A05NP.F1 a9a05np.f1 28 2.1
A5F02NP.F1 a5f02np.f1 28 2.1
A4G09NP.R1 a4g09np.r1 28 2.1
A1C01NP.F1 a1c01np.f1 28 2.1
C4B06NP.R1 c4b06np.r1 26 8.3
B8E08NP.R1 b8e08np.r1 26 8.3
B7B06NP.R1 b7b06np.r1 26 8.3
B6B06NP.F1 b6b06np.f1 26 8.3
B5H10NP.R1 b5h10np.r1 26 8.3
B5E09NP.R1 b5e09np.r1 26 8.3
B5E03NP.R1 b5e03np.r1 26 8.3
B5A07NP.R1 b5a07np.r1 26 8.3
B4G05NP.R1 b4g05np.r1 26 8.3
B2E12NP.R1 b2e12np.r1 26 8.3
B1E09NP.R1 b1e09np.r1 26 8.3
A8E04NP.R1 a8e04np.r1 26 8.3
A8A10NP.R1 a8a10np.r1 26 8.3
A7G04NP.R1 a7g04np.r1 26 8.3
A6E09NP.R1 a6e09np.r1 26 8.3
A3D03NP.F1 a3d03np.f1 26 8.3
A2H07NP.F1 a2h07np.f1 26 8.3
>A6H07NP.R1 a6h07np.r1
Length = 501
Score = 30.2 bits (15), Expect = 0.53
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 tgaagaaggacggct 228
|||||||||||||||
Sbjct: 279 tgaagaaggacggct 293
>C5A02NP.R1 c5a02np.r1
Length = 303
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 actacaccctctcc 76
||||||||||||||
Sbjct: 279 actacaccctctcc 292
>C4G03NP.R1 c4g03np.r1
Length = 436
Score = 28.2 bits (14), Expect = 2.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 216 aagaaggacggctctggt 233
|||||||||||| |||||
Sbjct: 199 aagaaggacggcactggt 216
>C1D05NP.R1 c1d05np.r1
Length = 417
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 ctcgcttctttggt 179
||||||||||||||
Sbjct: 12 ctcgcttctttggt 25
>B5E08NP.R1 b5e08np.r1
Length = 475
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 362 tgagcccgaacccg 375
||||||||||||||
Sbjct: 179 tgagcccgaacccg 192
>B1A01NP.F1 b1a01np.f1
Length = 476
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 270 ggcgagcagttcac 283
||||||||||||||
Sbjct: 464 ggcgagcagttcac 451
>A9A05NP.F1 a9a05np.f1
Length = 536
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 gaaggtgaagaagg 222
||||||||||||||
Sbjct: 492 gaaggtgaagaagg 479
>A5F02NP.F1 a5f02np.f1
Length = 442
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 399 cctgaagaggaaga 412
||||||||||||||
Sbjct: 440 cctgaagaggaaga 427
>A4G09NP.R1 a4g09np.r1
Length = 465
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 454 gatcttcttcttga 467
||||||||||||||
Sbjct: 212 gatcttcttcttga 199
>A1C01NP.F1 a1c01np.f1
Length = 466
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 399 cctgaagaggaaga 412
||||||||||||||
Sbjct: 319 cctgaagaggaaga 306
>C4B06NP.R1 c4b06np.r1
Length = 471
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 210 aaggtgaagaagg 222
|||||||||||||
Sbjct: 22 aaggtgaagaagg 10
>B8E08NP.R1 b8e08np.r1
Length = 442
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 100 acaaggccaacga 112
|||||||||||||
Sbjct: 271 acaaggccaacga 283
>B7B06NP.R1 b7b06np.r1
Length = 465
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 202 accccaagaaggt 214
|||||||||||||
Sbjct: 424 accccaagaaggt 436
>B6B06NP.F1 b6b06np.f1
Length = 369
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 263 catcgctggcgag 275
|||||||||||||
Sbjct: 268 catcgctggcgag 256
>B5H10NP.R1 b5h10np.r1
Length = 408
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 197 cgtcgaccccaag 209
|||||||||||||
Sbjct: 161 cgtcgaccccaag 173
>B5E09NP.R1 b5e09np.r1
Length = 560
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 11 cggcatcccatac 23
|||||||||||||
Sbjct: 217 cggcatcccatac 229
>B5E03NP.R1 b5e03np.r1
Length = 427
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 279 ttcacctttacca 291
|||||||||||||
Sbjct: 389 ttcacctttacca 401
>B5A07NP.R1 b5a07np.r1
Length = 497
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 295 cccgccgccgctc 307
|||||||||||||
Sbjct: 136 cccgccgccgctc 124
>B4G05NP.R1 b4g05np.r1
Length = 544
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 279 ttcacctttacca 291
|||||||||||||
Sbjct: 57 ttcacctttacca 69
>B2E12NP.R1 b2e12np.r1
Length = 530
Score = 26.3 bits (13), Expect = 8.3
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 457 cttcttcttgatcgatc 473
||||||||||| |||||
Sbjct: 452 cttcttcttgagcgatc 436
>B1E09NP.R1 b1e09np.r1
Length = 436
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 210 aaggtgaagaagg 222
|||||||||||||
Sbjct: 307 aaggtgaagaagg 319
>A8E04NP.R1 a8e04np.r1
Length = 466
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 224 cggctctggtcga 236
|||||||||||||
Sbjct: 342 cggctctggtcga 354
>A8A10NP.R1 a8a10np.r1
Length = 485
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 203 ccccaagaaggtg 215
|||||||||||||
Sbjct: 314 ccccaagaaggtg 326
>A7G04NP.R1 a7g04np.r1
Length = 483
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 210 aaggtgaagaagg 222
|||||||||||||
Sbjct: 123 aaggtgaagaagg 135
>A6E09NP.R1 a6e09np.r1
Length = 411
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 206 caagaaggtgaag 218
|||||||||||||
Sbjct: 105 caagaaggtgaag 117
>A3D03NP.F1 a3d03np.f1
Length = 517
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 537 atgagggggatgg 549
|||||||||||||
Sbjct: 195 atgagggggatgg 183
>A2H07NP.F1 a2h07np.f1
Length = 528
Score = 26.3 bits (13), Expect = 8.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 14 catcccatacata 26
|||||||||||||
Sbjct: 261 catcccatacata 249
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 460
Number of Sequences: 2682
Number of extensions: 460
Number of successful extensions: 93
Number of sequences better than 10.0: 27
length of query: 616
length of database: 1,147,514
effective HSP length: 14
effective length of query: 602
effective length of database: 1,109,966
effective search space: 668199532
effective search space used: 668199532
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)