BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_B03_C06ZS5.se
q
(585 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B6G08NP.F1 b6g08np.f1 30 0.50
C5G10NP.R1 c5g10np.r1 28 2.0
C5D06NP.R1 c5d06np.r1 28 2.0
C5D06NP.F1 c5d06np.f1 28 2.0
C2G04NP.R1 c2g04np.r1 28 2.0
C2G01NP.R1 c2g01np.r1 28 2.0
C3H07NP.F1 c3h07np.f1 26 7.9
C1E07NP.F1 c1e07np.f1 26 7.9
C1C12NP.F1 c1c12np.f1 26 7.9
B7H10NP.R1 b7h10np.r1 26 7.9
B7B03NP.R1 b7b03np.r1 26 7.9
B6B10NP.F1 b6b10np.f1 26 7.9
B3D06NP.F1 b3d06np.f1 26 7.9
B1F11NP.F1 b1f11np.f1 26 7.9
A9E05NP.R1 a9e05np.r1 26 7.9
A9E05NP.F1 a9e05np.f1 26 7.9
A9C01NP.F1 a9c01np.f1 26 7.9
A8C12NP.R1 a8c12np.r1 26 7.9
A5A07NP.R1 a5a07np.r1 26 7.9
A4B07NP.F1 a4b07np.f1 26 7.9
A4A12NP.R1 a4a12np.r1 26 7.9
A3A03NP.F1 a3a03np.f1 26 7.9
A1G02NP.F1 a1g02np.f1 26 7.9
A1C11NP.F1 a1c11np.f1 26 7.9
>B6G08NP.F1 b6g08np.f1
Length = 424
Score = 30.2 bits (15), Expect = 0.50
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 451 ttgagtccatcggcg 465
|||||||||||||||
Sbjct: 203 ttgagtccatcggcg 217
>C5G10NP.R1 c5g10np.r1
Length = 424
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 388 ttcagctgtctttc 401
||||||||||||||
Sbjct: 121 ttcagctgtctttc 134
>C5D06NP.R1 c5d06np.r1
Length = 532
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 460 tcggcgacaagtca 473
||||||||||||||
Sbjct: 230 tcggcgacaagtca 243
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 285 taacttgatcaaa 297
|||||||||||||
Sbjct: 54 taacttgatcaaa 42
>C5D06NP.F1 c5d06np.f1
Length = 527
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 460 tcggcgacaagtca 473
||||||||||||||
Sbjct: 493 tcggcgacaagtca 480
>C2G04NP.R1 c2g04np.r1
Length = 502
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 376 ctcgacgatggctt 389
||||||||||||||
Sbjct: 470 ctcgacgatggctt 483
>C2G01NP.R1 c2g01np.r1
Length = 401
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 371 atccactcgacgat 384
||||||||||||||
Sbjct: 89 atccactcgacgat 76
>C3H07NP.F1 c3h07np.f1
Length = 468
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 395 gtctttccttctt 407
|||||||||||||
Sbjct: 128 gtctttccttctt 140
>C1E07NP.F1 c1e07np.f1
Length = 337
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 312 aacaatacttctt 324
|||||||||||||
Sbjct: 4 aacaatacttctt 16
>C1C12NP.F1 c1c12np.f1
Length = 561
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 139 ttgttggttttgt 151
|||||||||||||
Sbjct: 213 ttgttggttttgt 201
>B7H10NP.R1 b7h10np.r1
Length = 458
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 126 ccaatccttcagc 138
|||||||||||||
Sbjct: 18 ccaatccttcagc 30
>B7B03NP.R1 b7b03np.r1
Length = 429
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 181 tcaaccgggttcc 193
|||||||||||||
Sbjct: 248 tcaaccgggttcc 236
>B6B10NP.F1 b6b10np.f1
Length = 393
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 240 aagccacaatcaa 252
|||||||||||||
Sbjct: 148 aagccacaatcaa 160
>B3D06NP.F1 b3d06np.f1
Length = 564
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 227 tcaagtctgagcc 239
|||||||||||||
Sbjct: 366 tcaagtctgagcc 354
>B1F11NP.F1 b1f11np.f1
Length = 480
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 395 gtctttccttctt 407
|||||||||||||
Sbjct: 128 gtctttccttctt 140
>A9E05NP.R1 a9e05np.r1
Length = 338
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 395 gtctttccttctt 407
|||||||||||||
Sbjct: 231 gtctttccttctt 219
>A9E05NP.F1 a9e05np.f1
Length = 331
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 395 gtctttccttctt 407
|||||||||||||
Sbjct: 128 gtctttccttctt 140
>A9C01NP.F1 a9c01np.f1
Length = 463
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 214 ccatatcaatgct 226
|||||||||||||
Sbjct: 39 ccatatcaatgct 51
>A8C12NP.R1 a8c12np.r1
Length = 469
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 115 aagtcaagacccc 127
|||||||||||||
Sbjct: 9 aagtcaagacccc 21
>A5A07NP.R1 a5a07np.r1
Length = 533
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 224 gcttcaagtctga 236
|||||||||||||
Sbjct: 297 gcttcaagtctga 309
>A4B07NP.F1 a4b07np.f1
Length = 286
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 115 aagtcaagacccc 127
|||||||||||||
Sbjct: 237 aagtcaagacccc 225
>A4A12NP.R1 a4a12np.r1
Length = 555
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 350 atcattcacaatg 362
|||||||||||||
Sbjct: 261 atcattcacaatg 273
>A3A03NP.F1 a3a03np.f1
Length = 324
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 396 tctttccttctta 408
|||||||||||||
Sbjct: 306 tctttccttctta 294
>A1G02NP.F1 a1g02np.f1
Length = 342
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 395 gtctttccttctt 407
|||||||||||||
Sbjct: 128 gtctttccttctt 140
>A1C11NP.F1 a1c11np.f1
Length = 574
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 419 tgcttcagcagga 431
|||||||||||||
Sbjct: 319 tgcttcagcagga 331
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 401
Number of Sequences: 2682
Number of extensions: 401
Number of successful extensions: 143
Number of sequences better than 10.0: 24
length of query: 585
length of database: 1,147,514
effective HSP length: 14
effective length of query: 571
effective length of database: 1,109,966
effective search space: 633790586
effective search space used: 633790586
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)