BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_C07_E14ZS5.se
q
(469 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A1E01NP.R1 a1e01np.r1 28 1.6
C5G04NP.F1 c5g04np.f1 26 6.3
C5D07NP.F1 c5d07np.f1 26 6.3
B7B10NP.R1 b7b10np.r1 26 6.3
B5F02NP.R1 b5f02np.r1 26 6.3
B3H03NP.R1 b3h03np.r1 26 6.3
B2B02NP.R1 b2b02np.r1 26 6.3
A6G01NP.F1 a6g01np.f1 26 6.3
A5E02NP.R1 a5e02np.r1 26 6.3
A4B10NP.F1 a4b10np.f1 26 6.3
A3H06NP.F1 a3h06np.f1 26 6.3
A3C01NP.F1 a3c01np.f1 26 6.3
>A1E01NP.R1 a1e01np.r1
Length = 449
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 aagagatgaagagc 18
||||||||||||||
Sbjct: 214 aagagatgaagagc 201
>C5G04NP.F1 c5g04np.f1
Length = 520
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 287 gggtcttgccatc 299
|||||||||||||
Sbjct: 488 gggtcttgccatc 476
>C5D07NP.F1 c5d07np.f1
Length = 558
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 50 aagacaactgaca 62
|||||||||||||
Sbjct: 73 aagacaactgaca 85
>B7B10NP.R1 b7b10np.r1
Length = 525
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 234 gaggatgaagcca 246
|||||||||||||
Sbjct: 279 gaggatgaagcca 291
>B5F02NP.R1 b5f02np.r1
Length = 405
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 356 tacagagttgact 368
|||||||||||||
Sbjct: 149 tacagagttgact 161
>B3H03NP.R1 b3h03np.r1
Length = 509
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 229 tggaggaggatga 241
|||||||||||||
Sbjct: 100 tggaggaggatga 88
>B2B02NP.R1 b2b02np.r1
Length = 534
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 276 tgcgcctcaacgg 288
|||||||||||||
Sbjct: 277 tgcgcctcaacgg 289
>A6G01NP.F1 a6g01np.f1
Length = 523
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 230 ggaggaggatgaa 242
|||||||||||||
Sbjct: 346 ggaggaggatgaa 334
>A5E02NP.R1 a5e02np.r1
Length = 446
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 275 ttgcgcctcaacg 287
|||||||||||||
Sbjct: 303 ttgcgcctcaacg 291
>A4B10NP.F1 a4b10np.f1
Length = 491
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 122 ttccacgagcaag 134
|||||||||||||
Sbjct: 434 ttccacgagcaag 422
>A3H06NP.F1 a3h06np.f1
Length = 465
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 59 gacaactgaaggg 71
|||||||||||||
Sbjct: 406 gacaactgaaggg 394
>A3C01NP.F1 a3c01np.f1
Length = 583
Score = 26.3 bits (13), Expect = 6.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 288 ggtcttgccatca 300
|||||||||||||
Sbjct: 508 ggtcttgccatca 520
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 237
Number of Sequences: 2682
Number of extensions: 237
Number of successful extensions: 64
Number of sequences better than 10.0: 12
length of query: 469
length of database: 1,147,514
effective HSP length: 14
effective length of query: 455
effective length of database: 1,109,966
effective search space: 505034530
effective search space used: 505034530
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)