BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_E02_I04ZS5.se
q
(395 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A3H10NP.R1 a3h10np.r1 30 0.34
C5F02NP.R1 c5f02np.r1 28 1.3
C4C05NP.R1 c4c05np.r1 28 1.3
C3F01NP.R1 c3f01np.r1 28 1.3
C3D03NP.R1 c3d03np.r1 28 1.3
C2D12NP.R1 c2d12np.r1 28 1.3
B4E01NP.R1 b4e01np.r1 28 1.3
A6H10NP.F1 a6h10np.f1 28 1.3
A5F10NP.R1 a5f10np.r1 28 1.3
A3A07NP.R1 a3a07np.r1 28 1.3
A2E01NP.F1 a2e01np.f1 28 1.3
A1H10NP.R1 a1h10np.r1 28 1.3
C5H11NP.F1 c5h11np.f1 26 5.2
C3A04NP.R1 c3a04np.r1 26 5.2
B4C02NP.R1 b4c02np.r1 26 5.2
B1C01NP.R1 b1c01np.r1 26 5.2
B1B11NP.R1 b1b11np.r1 26 5.2
A9C03NP.F1 a9c03np.f1 26 5.2
A1B04NP.R1 a1b04np.r1 26 5.2
>A3H10NP.R1 a3h10np.r1
Length = 530
Score = 30.2 bits (15), Expect = 0.34
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 atgttcaagaagaag 148
|||||||||||||||
Sbjct: 180 atgttcaagaagaag 166
>C5F02NP.R1 c5f02np.r1
Length = 186
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagga 105
||||||||||||||
Sbjct: 24 gattccaagaagga 37
>C4C05NP.R1 c4c05np.r1
Length = 347
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagga 105
||||||||||||||
Sbjct: 194 gattccaagaagga 207
>C3F01NP.R1 c3f01np.r1
Length = 466
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 aggacaacctcaag 64
||||||||||||||
Sbjct: 453 aggacaacctcaag 466
>C3D03NP.R1 c3d03np.r1
Length = 479
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagga 105
||||||||||||||
Sbjct: 156 gattccaagaagga 169
>C2D12NP.R1 c2d12np.r1
Length = 519
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagga 105
||||||||||||||
Sbjct: 185 gattccaagaagga 198
>B4E01NP.R1 b4e01np.r1
Length = 588
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagga 105
||||||||||||||
Sbjct: 170 gattccaagaagga 183
>A6H10NP.F1 a6h10np.f1
Length = 507
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 299 ttgtttacttttga 312
||||||||||||||
Sbjct: 250 ttgtttacttttga 237
>A5F10NP.R1 a5f10np.r1
Length = 450
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagga 105
||||||||||||||
Sbjct: 180 gattccaagaagga 193
>A3A07NP.R1 a3a07np.r1
Length = 360
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagga 105
||||||||||||||
Sbjct: 174 gattccaagaagga 187
>A2E01NP.F1 a2e01np.f1
Length = 491
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 357 caatactcgtctgg 370
||||||||||||||
Sbjct: 159 caatactcgtctgg 172
>A1H10NP.R1 a1h10np.r1
Length = 534
Score = 28.2 bits (14), Expect = 1.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagga 105
||||||||||||||
Sbjct: 164 gattccaagaagga 177
>C5H11NP.F1 c5h11np.f1
Length = 446
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 15 gggatcaacccaa 27
|||||||||||||
Sbjct: 400 gggatcaacccaa 412
>C3A04NP.R1 c3a04np.r1
Length = 518
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 118 atgcaaatgcaag 130
|||||||||||||
Sbjct: 224 atgcaaatgcaag 212
>B4C02NP.R1 b4c02np.r1
Length = 583
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagg 104
|||||||||||||
Sbjct: 276 gattccaagaagg 288
>B1C01NP.R1 b1c01np.r1
Length = 506
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 56 aacctcaaggacg 68
|||||||||||||
Sbjct: 229 aacctcaaggacg 217
>B1B11NP.R1 b1b11np.r1
Length = 530
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 248 ccaatggtatgga 260
|||||||||||||
Sbjct: 399 ccaatggtatgga 411
>A9C03NP.F1 a9c03np.f1
Length = 475
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 175 gatgaagtccaag 187
|||||||||||||
Sbjct: 371 gatgaagtccaag 359
>A1B04NP.R1 a1b04np.r1
Length = 578
Score = 26.3 bits (13), Expect = 5.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 92 gattccaagaagg 104
|||||||||||||
Sbjct: 178 gattccaagaagg 190
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 268
Number of Sequences: 2682
Number of extensions: 268
Number of successful extensions: 86
Number of sequences better than 10.0: 19
length of query: 395
length of database: 1,147,514
effective HSP length: 14
effective length of query: 381
effective length of database: 1,109,966
effective search space: 422897046
effective search space used: 422897046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)