TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_E02_I04ZS5.se
q
(395 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B4H10NP.F1 b4h10np.f1 27 0.27
B4H10NP.R1 b4h10np.r1 27 0.27
B5A10NP.F1 b5a10np.f1 26 0.37
C3G12NP.F1 c3g12np.f1 26 0.50
C3A02NP.R1 c3a02np.r1 25 0.69
C5B09NP.R1 c5b09np.r1 25 0.69
A5D01NP.F1 a5d01np.f1 25 0.95
B3E05NP.R1 b3e05np.r1 24 1.3
A3G05NP.R1 a3g05np.r1 23 1.5
C5G06NP.F1 c5g06np.f1 23 1.6
A1A05NP.R1 a1a05np.r1 24 1.8
B3C06NP.R1 b3c06np.r1 24 1.8
C1G11NP.R1 c1g11np.r1 24 2.5
C5A03NP.F1 c5a03np.f1 24 2.5
C4H08NP.R1 c4h08np.r1 24 2.5
A5B09NP.R1 a5b09np.r1 23 3.4
A4F06NP.R1 a4f06np.r1 23 4.7
C1E06NP.F1 c1e06np.f1 23 4.7
B1D07NP.R1 b1d07np.r1 23 4.7
B2D05NP.R1 b2d05np.r1 23 4.7
A5C03NP.R1 a5c03np.r1 23 4.7
C5F08NP.R1 c5f08np.r1 22 6.4
A5D04NP.R1 a5d04np.r1 22 6.4
A6B11NP.F1 a6b11np.f1 22 6.4
A1B05NP.R1 a1b05np.r1 22 6.4
B1D02NP.R1 b1d02np.r1 22 6.4
B4F05NP.R1 b4f05np.r1 22 8.8
A1A06NP.R1 a1a06np.r1 22 8.8
B2E08NP.F1 b2e08np.f1 22 8.8
C4B08NP.R1 c4b08np.r1 22 8.8
A9H05NP.R1 a9h05np.r1 22 8.8
A4F04NP.R1 a4f04np.r1 22 8.8
A4E03NP.R1 a4e03np.r1 22 8.8
A3F04NP.R1 a3f04np.r1 22 8.8
C2E09NP.R1 c2e09np.r1 22 8.8
B1G05NP.R1 b1g05np.r1 22 8.8
A2B11NP.R1 a2b11np.r1 22 8.8
B8B09NP.R1 b8b09np.r1 22 8.8
B6F03NP.R1 b6f03np.r1 22 8.8
B3F06NP.R1 b3f06np.r1 22 8.8
C3H08NP.F1 c3h08np.f1 22 8.8
B7H09NP.R1 b7h09np.r1 22 8.8
>B4H10NP.F1 b4h10np.f1
Length = 331
Score = 26.7 bits (52), Expect = 0.27
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1 / +3
Query: 290 IVPHPLCEPKSIPLVVAQT 234
I P+PL P S+PL+ ++T
Sbjct: 264 IHPYPLSSP*SVPLITSET 320
>B4H10NP.R1 b4h10np.r1
Length = 555
Score = 26.7 bits (52), Expect = 0.27
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1 / -2
Query: 290 IVPHPLCEPKSIPLVVAQT 234
I P+PL P S+PL+ ++T
Sbjct: 515 IHPYPLSSP*SVPLITSET 459
>B5A10NP.F1 b5a10np.f1
Length = 340
Score = 26.3 bits (51), Expect = 0.37
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2 / +2
Query: 23 PKDEPKEELKDNLKDETKDEPKTDS 97
P+D K E+K K DEP T +
Sbjct: 50 PRDRAKREIKSEQKPWIADEPPTST 124
>C3G12NP.F1 c3g12np.f1
Length = 503
Score = 25.8 bits (50), Expect = 0.50
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3 / -1
Query: 201 FISNIWSMD*RSLGDYQWY 257
F+SN+ S+D +G Y W+
Sbjct: 257 FVSNVPSLDVDGMGSYVWH 201
>C3A02NP.R1 c3a02np.r1
Length = 341
Score = 25.3 bits (49), Expect = 0.69
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1 / +2
Query: 377 RCSRRVLETLFTLSCSGPTVAL 312
RCSR +L LF L PTV++
Sbjct: 80 RCSRPILSPLF*LQGHTPTVSV 145
>C5B09NP.R1 c5b09np.r1
Length = 451
Score = 25.3 bits (49), Expect = 0.69
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2 / +1
Query: 265 PSPYHW*SPKLR*S 224
P P HW SP+LR*+
Sbjct: 217 PCPPHWPSPRLR*A 258
>A5D01NP.F1 a5d01np.f1
Length = 339
Score = 24.9 bits (48), Expect = 0.95
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -1 / -3
Query: 47 VPPLVRPWVDPW 12
+PP PW PW
Sbjct: 181 IPPYAPPWYTPW 146
>B3E05NP.R1 b3e05np.r1
Length = 514
Score = 24.4 bits (47), Expect = 1.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1 / +1
Query: 200 PLIPPWTSSLTP 165
P+ PWT+S T
Sbjct: 85 PISQPWTTSRTE 120
>A3G05NP.R1 a3g05np.r1
Length = 503
Score = 23.1 bits (44), Expect(2) = 1.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1 / -3
Query: 89 SWVRPWFRP*GCP* 48
+W RPW P* P*
Sbjct: 300 AWERPWPGP*WIP* 259
Score = 19.8 bits (37), Expect(2) = 1.5
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1 / -2
Query: 188 PWTSSLTP 165
PW SSL+P
Sbjct: 478 PWLSSLSP 455
>C5G06NP.F1 c5g06np.f1
Length = 553
Score = 23.1 bits (44), Expect(2) = 1.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1 / +1
Query: 89 SWVRPWFRP*GCP* 48
+W RPW P* P*
Sbjct: 493 AWERPWPGP*WIP* 534
Score = 19.8 bits (37), Expect(2) = 1.6
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1 / +3
Query: 188 PWTSSLTP 165
PW SSL+P
Sbjct: 315 PWLSSLSP 338
>A1A05NP.R1 a1a05np.r1
Length = 551
Score = 24.0 bits (46), Expect = 1.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1 / +3
Query: 47 VPPLVRPWVDPWAR 6
+PPL+ P + PW R
Sbjct: 345 LPPLLPPLMKPWTR 386
Score = 22.6 bits (43), Expect = 4.7
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -1 / +3
Query: 53 P*VPPLVRP 27
P +PPL++P
Sbjct: 351 PLLPPLMKP 377
>B3C06NP.R1 b3c06np.r1
Length = 436
Score = 24.0 bits (46), Expect = 1.8
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +3 / -3
Query: 240 GDYQWYGLGFTQ 275
GD W GL +T+
Sbjct: 56 GDGDWTGLDWTE 21
>C1G11NP.R1 c1g11np.r1
Length = 503
Score = 23.5 bits (45), Expect = 2.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -1 / -3
Query: 98 WNLSWVRPW 72
W LSW PW
Sbjct: 225 WYLSWFTPW 199
>C5A03NP.F1 c5a03np.f1
Length = 562
Score = 23.5 bits (45), Expect = 2.5
Identities = 9/21 (42%), Positives = 12/21 (56%)
Frame = +1 / -1
Query: 319 TVGPEQLKVNSVSNTRLEQRI 381
T+ P+QL N + RL RI
Sbjct: 490 TLSPKQLSKNITAAFRLAARI 428
>C4H08NP.R1 c4h08np.r1
Length = 458
Score = 23.5 bits (45), Expect = 2.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -1 / -3
Query: 98 WNLSWVRPW 72
W LSW PW
Sbjct: 369 WYLSWFTPW 343
>A5B09NP.R1 a5b09np.r1
Length = 475
Score = 23.1 bits (44), Expect = 3.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1 / +3
Query: 199 GSSQTFGVWTSE 234
G S+ FG+WTS+
Sbjct: 24 GRSKPFGLWTSQ 59
>A4F06NP.R1 a4f06np.r1
Length = 564
Score = 22.6 bits (43), Expect = 4.7
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = -3 / +2
Query: 249 GSRPNFASPYSKCLR 205
GSR +F P S C R
Sbjct: 221 GSRQHFRRPVSNCFR 265
>C1E06NP.F1 c1e06np.f1
Length = 566
Score = 22.6 bits (43), Expect = 4.7
Identities = 5/10 (50%), Positives = 6/10 (60%)
Frame = -1 / -2
Query: 185 WTSSLTPWTH 156
W+ S PW H
Sbjct: 460 WSGS*CPWIH 431
>B1D07NP.R1 b1d07np.r1
Length = 490
Score = 22.6 bits (43), Expect = 4.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3 / +3
Query: 324 YSSPSKVNKHTNCPTSIV*TQVHTIGSRPNFASPYSK 214
+SS + ++HTN P S P+ ASP K
Sbjct: 123 FSSSTTYSQHTNNPNKQQKCSSRPSSSPPSPASPLPK 233
>B2D05NP.R1 b2d05np.r1
Length = 456
Score = 22.6 bits (43), Expect = 4.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1 / +2
Query: 197 LIPPWTSSLTP 165
L+PPW SS P
Sbjct: 266 LLPPWRSSWLP 298
>A5C03NP.R1 a5c03np.r1
Length = 452
Score = 22.6 bits (43), Expect = 4.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2 / +1
Query: 5 HEPRDQPKDEPKEELKDNLKDETKDEPKTDSK 100
H P QPK P + + + D+ + T SK
Sbjct: 46 HNPSHQPKWVPSRDAANYVGDKGQGATATASK 141
>C5F08NP.R1 c5f08np.r1
Length = 320
Score = 22.1 bits (42), Expect = 6.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2 / +2
Query: 265 PSPYHW*SPKL 233
P P HW SP+L
Sbjct: 218 PCPPHWPSPRL 250
>A5D04NP.R1 a5d04np.r1
Length = 232
Score = 22.1 bits (42), Expect = 6.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1 / -3
Query: 200 PLIPPWTSSLT 168
PLIPP+T LT
Sbjct: 77 PLIPPFTPMLT 45
>A6B11NP.F1 a6b11np.f1
Length = 370
Score = 22.1 bits (42), Expect = 6.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 234 SLGDYQWYGLG 266
SL + QW+GLG
Sbjct: 284 SLANRQWFGLG 316
Score = 21.7 bits (41), Expect = 8.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1 / +3
Query: 377 RCSRRVLETLF 345
RCSRRV+ +L+
Sbjct: 108 RCSRRVIPSLY 140
>A1B05NP.R1 a1b05np.r1
Length = 426
Score = 22.1 bits (42), Expect = 6.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1 / +1
Query: 296 ILIVPHPLCEPKSIPLVVAQTSLVH 222
I +PHP SIPL SL +
Sbjct: 40 IFFLPHPSAAAPSIPLRSCPWSLAN 114
>B1D02NP.R1 b1d02np.r1
Length = 453
Score = 22.1 bits (42), Expect = 6.4
Identities = 7/19 (36%), Positives = 7/19 (36%)
Frame = +2 / -3
Query: 239 GRLPMVWTWVHTMDVGQLV 295
GR P W W T L
Sbjct: 283 GRCPGQWVWGATASWAALA 227
>B4F05NP.R1 b4f05np.r1
Length = 565
Score = 21.7 bits (41), Expect = 8.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -1 / -1
Query: 56 CP*VPPLVRPWVDPWA 9
C +PP R VD WA
Sbjct: 163 CTPLPPAKRAQVDHWA 116
>A1A06NP.R1 a1a06np.r1
Length = 563
Score = 21.7 bits (41), Expect = 8.8
Identities = 12/38 (31%), Positives = 16/38 (41%)
Frame = -3 / +1
Query: 327 SYSSPSKVNKHTNCPTSIV*TQVHTIGSRPNFASPYSK 214
S ++ K +HTN P S P+ ASP K
Sbjct: 124 SQATQHKTKQHTNNPNKQQKCSSRPSSSPPSPASPLPK 237
>B2E08NP.F1 b2e08np.f1
Length = 424
Score = 21.7 bits (41), Expect = 8.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2 / +1
Query: 286 SHIHCVNPSPYH 251
+H+H +PSP H
Sbjct: 319 THLHTPSPSPSH 354
>C4B08NP.R1 c4b08np.r1
Length = 463
Score = 21.7 bits (41), Expect = 8.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1 / -1
Query: 191 PPWTSSLTPW 162
P WTSSL W
Sbjct: 190 PRWTSSLALW 161
>A9H05NP.R1 a9h05np.r1
Length = 380
Score = 21.7 bits (41), Expect = 8.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1 / -3
Query: 229 SEVWATTNGMDLGSHNGCGTISMLVYF 309
SEV A T +DLG G + + + F
Sbjct: 369 SEVEAGTGSLDLGGFP*TGFVGVFLVF 289
>A4F04NP.R1 a4f04np.r1
Length = 484
Score = 21.7 bits (41), Expect = 8.8
Identities = 12/38 (31%), Positives = 16/38 (41%)
Frame = -3 / +3
Query: 327 SYSSPSKVNKHTNCPTSIV*TQVHTIGSRPNFASPYSK 214
S ++ K +HTN P S P+ ASP K
Sbjct: 114 SQATQHKTKQHTNNPNKQQKCSSRPSSSPPSPASPLPK 227
>A4E03NP.R1 a4e03np.r1
Length = 485
Score = 21.7 bits (41), Expect = 8.8
Identities = 12/38 (31%), Positives = 16/38 (41%)
Frame = -3 / +1
Query: 327 SYSSPSKVNKHTNCPTSIV*TQVHTIGSRPNFASPYSK 214
S ++ K +HTN P S P+ ASP K
Sbjct: 115 SQATQHKTKQHTNNPNKQQKCSSRPSSSPPSPASPLPK 228
>A3F04NP.R1 a3f04np.r1
Length = 529
Score = 21.7 bits (41), Expect = 8.8
Identities = 12/38 (31%), Positives = 16/38 (41%)
Frame = -3 / +2
Query: 327 SYSSPSKVNKHTNCPTSIV*TQVHTIGSRPNFASPYSK 214
S ++ K +HTN P S P+ ASP K
Sbjct: 143 SQATQHKTKQHTNNPNKQQKCSSRPSSSPPSPASPLPK 256
>C2E09NP.R1 c2e09np.r1
Length = 369
Score = 21.7 bits (41), Expect = 8.8
Identities = 5/12 (41%), Positives = 9/12 (74%)
Frame = +2 / +3
Query: 2 KHEPRDQPKDEP 37
+H+P+D P +P
Sbjct: 93 RHQPKDNPSPKP 128
>B1G05NP.R1 b1g05np.r1
Length = 492
Score = 21.7 bits (41), Expect = 8.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1 / -2
Query: 86 WVRPWFRP*GCP*VPPLV 33
WV PW *G V PLV
Sbjct: 263 WVVPWGLK*GPAEVQPLV 210
>A2B11NP.R1 a2b11np.r1
Length = 544
Score = 21.7 bits (41), Expect = 8.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3 / -2
Query: 315 GYCRTRTAQGK*CFQYSSGTA 377
G C ++ G+ C + SSG+A
Sbjct: 216 GQCTRASSIGRPCHRVSSGSA 154
>B8B09NP.R1 b8b09np.r1
Length = 454
Score = 21.7 bits (41), Expect = 8.8
Identities = 12/38 (31%), Positives = 16/38 (41%)
Frame = -3 / +1
Query: 327 SYSSPSKVNKHTNCPTSIV*TQVHTIGSRPNFASPYSK 214
S ++ K +HTN P S P+ ASP K
Sbjct: 169 SQATQHKTKQHTNNPNKQQKCSSRPSSSPPSPASPLPK 282
>B6F03NP.R1 b6f03np.r1
Length = 478
Score = 21.7 bits (41), Expect = 8.8
Identities = 10/34 (29%), Positives = 17/34 (49%)
Frame = -1 / +3
Query: 260 SIPLVVAQTSLVHTPNV*DEPLIPPWTSSLTPWT 159
SIP+ +++ + T V P PP+ + P T
Sbjct: 45 SIPICRRKSNTILTAPVGRRPTSPPFAKTACPRT 146
>B3F06NP.R1 b3f06np.r1
Length = 571
Score = 21.7 bits (41), Expect = 8.8
Identities = 12/38 (31%), Positives = 16/38 (41%)
Frame = -3 / +3
Query: 327 SYSSPSKVNKHTNCPTSIV*TQVHTIGSRPNFASPYSK 214
S ++ K +HTN P S P+ ASP K
Sbjct: 123 SQATQHKTKQHTNNPNKQQKCSSRPSSSPPSPASPLPK 236
>C3H08NP.F1 c3h08np.f1
Length = 476
Score = 21.7 bits (41), Expect = 8.8
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = +2 / -3
Query: 263 WVHTMDVGQLVCLFTFE 313
WV T D GQL L +E
Sbjct: 72 WVGTCDTGQLWVLV*YE 22
>B7H09NP.R1 b7h09np.r1
Length = 475
Score = 21.7 bits (41), Expect = 8.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1 / +1
Query: 260 SIPLVVAQTSLVHTPNV*DEPLIPP 186
S+PL+ + + + TP PL+ P
Sbjct: 400 SLPLLREEDTTIKTPRTLVPPLVTP 474
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 960793
Number of Sequences: 2682
Number of extensions: 12980
Number of successful extensions: 485
Number of sequences better than 10.0: 46
length of query: 131
length of database: 382,504
effective HSP length: 37
effective length of query: 94
effective length of database: 283,270
effective search space: 26627380
effective search space used: 26627380
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 41 (21.7 bits)