BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_F04_K08ZS5.se
q
(453 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B8G05NP.R1 b8g05np.r1 28 1.5
B3E04NP.F1 b3e04np.f1 28 1.5
B2D03NP.R1 b2d03np.r1 28 1.5
A9D03NP.R1 a9d03np.r1 28 1.5
C5C08NP.F1 c5c08np.f1 26 6.0
C5C01NP.F1 c5c01np.f1 26 6.0
C3H02NP.R1 c3h02np.r1 26 6.0
C1D12NP.F1 c1d12np.f1 26 6.0
B2B02NP.R1 b2b02np.r1 26 6.0
A9G12NP.R1 a9g12np.r1 26 6.0
A9E10NP.R1 a9e10np.r1 26 6.0
A9A07NP.R1 a9a07np.r1 26 6.0
A5H10NP.R1 a5h10np.r1 26 6.0
A4F02NP.R1 a4f02np.r1 26 6.0
A4E09NP.F1 a4e09np.f1 26 6.0
A2C10NP.R1 a2c10np.r1 26 6.0
>B8G05NP.R1 b8g05np.r1
Length = 437
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 caagagaagcaagc 189
||||||||||||||
Sbjct: 107 caagagaagcaagc 94
>B3E04NP.F1 b3e04np.f1
Length = 466
Score = 28.2 bits (14), Expect = 1.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 394 gtgatgtggagaggcgga 411
|||||| |||||||||||
Sbjct: 68 gtgatgaggagaggcgga 51
>B2D03NP.R1 b2d03np.r1
Length = 497
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 ggaagcggtggtga 207
||||||||||||||
Sbjct: 476 ggaagcggtggtga 463
>A9D03NP.R1 a9d03np.r1
Length = 406
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 gttgaaccgcaaga 143
||||||||||||||
Sbjct: 245 gttgaaccgcaaga 232
>C5C08NP.F1 c5c08np.f1
Length = 493
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 330 gtcgaggtcaaga 342
|||||||||||||
Sbjct: 235 gtcgaggtcaaga 223
>C5C01NP.F1 c5c01np.f1
Length = 522
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 223 taccgccgccgcc 235
|||||||||||||
Sbjct: 352 taccgccgccgcc 340
>C3H02NP.R1 c3h02np.r1
Length = 495
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 73 tgagcagcgtgag 85
|||||||||||||
Sbjct: 467 tgagcagcgtgag 479
>C1D12NP.F1 c1d12np.f1
Length = 549
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 179 gagaagcaagcag 191
|||||||||||||
Sbjct: 280 gagaagcaagcag 268
>B2B02NP.R1 b2b02np.r1
Length = 534
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 223 taccgccgccgcc 235
|||||||||||||
Sbjct: 423 taccgccgccgcc 411
>A9G12NP.R1 a9g12np.r1
Length = 402
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 225 ccgccgccgccta 237
|||||||||||||
Sbjct: 94 ccgccgccgccta 106
>A9E10NP.R1 a9e10np.r1
Length = 482
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 194 ggaagcggtggtg 206
|||||||||||||
Sbjct: 387 ggaagcggtggtg 399
>A9A07NP.R1 a9a07np.r1
Length = 504
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 134 aaccgcaagattg 146
|||||||||||||
Sbjct: 274 aaccgcaagattg 262
>A5H10NP.R1 a5h10np.r1
Length = 488
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 155 actgcagctgttc 167
|||||||||||||
Sbjct: 15 actgcagctgttc 27
>A4F02NP.R1 a4f02np.r1
Length = 507
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 73 tgagcagcgtgag 85
|||||||||||||
Sbjct: 101 tgagcagcgtgag 113
>A4E09NP.F1 a4e09np.f1
Length = 411
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 353 aaacagaggggcg 365
|||||||||||||
Sbjct: 91 aaacagaggggcg 103
>A2C10NP.R1 a2c10np.r1
Length = 388
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 439 cttgtggagattg 451
|||||||||||||
Sbjct: 365 cttgtggagattg 353
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 309
Number of Sequences: 2682
Number of extensions: 309
Number of successful extensions: 60
Number of sequences better than 10.0: 16
length of query: 453
length of database: 1,147,514
effective HSP length: 14
effective length of query: 439
effective length of database: 1,109,966
effective search space: 487275074
effective search space used: 487275074
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)