BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_F11_K22ZS5.se
q
(457 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
C2G07NP.R1 c2g07np.r1 28 1.5
C1A10NP.R1 c1a10np.r1 28 1.5
B2A10NP.R1 b2a10np.r1 26 6.1
A6F01NP.R1 a6f01np.r1 26 6.1
A3A08NP.F1 a3a08np.f1 26 6.1
A2B11NP.R1 a2b11np.r1 26 6.1
A2A04NP.R1 a2a04np.r1 26 6.1
>C2G07NP.R1 c2g07np.r1
Length = 449
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 gaagaagactccaa 234
||||||||||||||
Sbjct: 95 gaagaagactccaa 82
>C1A10NP.R1 c1a10np.r1
Length = 483
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 408 gtcttgatgagatc 421
||||||||||||||
Sbjct: 96 gtcttgatgagatc 83
>B2A10NP.R1 b2a10np.r1
Length = 539
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 103 cgagaactgccaa 115
|||||||||||||
Sbjct: 6 cgagaactgccaa 18
>A6F01NP.R1 a6f01np.r1
Length = 569
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 229 ctccaaagtctct 241
|||||||||||||
Sbjct: 298 ctccaaagtctct 310
>A3A08NP.F1 a3a08np.f1
Length = 515
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 341 cgcctgtgtctct 353
|||||||||||||
Sbjct: 249 cgcctgtgtctct 237
>A2B11NP.R1 a2b11np.r1
Length = 544
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 229 ctccaaagtctct 241
|||||||||||||
Sbjct: 294 ctccaaagtctct 306
>A2A04NP.R1 a2a04np.r1
Length = 447
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 21 ggcaacggagcct 33
|||||||||||||
Sbjct: 178 ggcaacggagcct 166
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 189
Number of Sequences: 2682
Number of extensions: 189
Number of successful extensions: 60
Number of sequences better than 10.0: 7
length of query: 457
length of database: 1,147,514
effective HSP length: 14
effective length of query: 443
effective length of database: 1,109,966
effective search space: 491714938
effective search space used: 491714938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)