BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_G01_M02ZS5.se
q
(463 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
C1D12NP.R1 c1d12np.r1 32 0.10
B8G02NP.R1 b8g02np.r1 30 0.40
B7D10NP.R1 b7d10np.r1 30 0.40
B2E07NP.R1 b2e07np.r1 30 0.40
C2E01NP.R1 c2e01np.r1 28 1.6
B6H06NP.R1 b6h06np.r1 28 1.6
A9B11NP.R1 a9b11np.r1 28 1.6
A8B10NP.F1 a8b10np.f1 28 1.6
A1F01NP.F1 a1f01np.f1 28 1.6
C5D07NP.R1 c5d07np.r1 26 6.2
C5D07NP.F1 c5d07np.f1 26 6.2
C4G04NP.R1 c4g04np.r1 26 6.2
C4F03NP.F1 c4f03np.f1 26 6.2
C3H06NP.F1 c3h06np.f1 26 6.2
C3F12NP.F1 c3f12np.f1 26 6.2
C3C09NP.R1 c3c09np.r1 26 6.2
C1F04NP.R1 c1f04np.r1 26 6.2
C1A03NP.F1 c1a03np.f1 26 6.2
B5D01NP.F1 b5d01np.f1 26 6.2
B3F02NP.R1 b3f02np.r1 26 6.2
B3B05NP.R1 b3b05np.r1 26 6.2
A9C11NP.R1 a9c11np.r1 26 6.2
A9B01NP.R1 a9b01np.r1 26 6.2
A6B11NP.R1 a6b11np.r1 26 6.2
A5E02NP.R1 a5e02np.r1 26 6.2
A4F02NP.R1 a4f02np.r1 26 6.2
A3H04NP.R1 a3h04np.r1 26 6.2
A3A04NP.F1 a3a04np.f1 26 6.2
A1D03NP.F1 a1d03np.f1 26 6.2
>C1D12NP.R1 c1d12np.r1
Length = 488
Score = 32.2 bits (16), Expect = 0.10
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 42 tgccaacatccacctc 57
||||||||||||||||
Sbjct: 358 tgccaacatccacctc 373
>B8G02NP.R1 b8g02np.r1
Length = 435
Score = 30.2 bits (15), Expect = 0.40
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 gctgctgctcgcgct 171
|||||||||||||||
Sbjct: 347 gctgctgctcgcgct 333
>B7D10NP.R1 b7d10np.r1
Length = 499
Score = 30.2 bits (15), Expect = 0.40
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 140 acggcgtcaagaccaaggctgct 162
||||| ||||| |||||||||||
Sbjct: 424 acggcctcaaggccaaggctgct 446
>B2E07NP.R1 b2e07np.r1
Length = 366
Score = 30.2 bits (15), Expect = 0.40
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 cgaggaggctgctgt 77
|||||||||||||||
Sbjct: 266 cgaggaggctgctgt 280
>C2E01NP.R1 c2e01np.r1
Length = 305
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 ccgcgagctcaacg 142
||||||||||||||
Sbjct: 251 ccgcgagctcaacg 264
>B6H06NP.R1 b6h06np.r1
Length = 543
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 cgaggaggctgctg 76
||||||||||||||
Sbjct: 381 cgaggaggctgctg 394
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 64 gaggaggctgctg 76
|||||||||||||
Sbjct: 466 gaggaggctgctg 478
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 64 gaggaggctgctg 76
|||||||||||||
Sbjct: 433 gaggaggctgctg 445
>A9B11NP.R1 a9b11np.r1
Length = 517
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 acgaggaggctgct 75
||||||||||||||
Sbjct: 296 acgaggaggctgct 309
>A8B10NP.F1 a8b10np.f1
Length = 221
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 ccaaggctgctgct 165
||||||||||||||
Sbjct: 187 ccaaggctgctgct 174
>A1F01NP.F1 a1f01np.f1
Length = 561
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 agaaggctgcttac 192
||||||||||||||
Sbjct: 18 agaaggctgcttac 5
>C5D07NP.R1 c5d07np.r1
Length = 468
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 37 ggtcttgccaaca 49
|||||||||||||
Sbjct: 381 ggtcttgccaaca 393
>C5D07NP.F1 c5d07np.f1
Length = 558
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 37 ggtcttgccaaca 49
|||||||||||||
Sbjct: 541 ggtcttgccaaca 529
>C4G04NP.R1 c4g04np.r1
Length = 453
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 37 ggtcttgccaaca 49
|||||||||||||
Sbjct: 199 ggtcttgccaaca 211
>C4F03NP.F1 c4f03np.f1
Length = 429
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 177 ggagaaggctgct 189
|||||||||||||
Sbjct: 132 ggagaaggctgct 120
>C3H06NP.F1 c3h06np.f1
Length = 452
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 172 gccaaggagaagg 184
|||||||||||||
Sbjct: 235 gccaaggagaagg 223
>C3F12NP.F1 c3f12np.f1
Length = 240
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 256 gttttttactcat 268
|||||||||||||
Sbjct: 156 gttttttactcat 144
>C3C09NP.R1 c3c09np.r1
Length = 513
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 70 gctgctgtgcgcg 82
|||||||||||||
Sbjct: 244 gctgctgtgcgcg 232
>C1F04NP.R1 c1f04np.r1
Length = 461
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 104 tcgcgcccaacga 116
|||||||||||||
Sbjct: 431 tcgcgcccaacga 443
>C1A03NP.F1 c1a03np.f1
Length = 425
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 276 ggtatagaacgcc 288
|||||||||||||
Sbjct: 40 ggtatagaacgcc 52
>B5D01NP.F1 b5d01np.f1
Length = 469
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 89 ccgaggccaacaa 101
|||||||||||||
Sbjct: 354 ccgaggccaacaa 366
>B3F02NP.R1 b3f02np.r1
Length = 463
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 5 gacgccgaccgcg 17
|||||||||||||
Sbjct: 353 gacgccgaccgcg 365
>B3B05NP.R1 b3b05np.r1
Length = 503
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 93 ggccaacaagctc 105
|||||||||||||
Sbjct: 250 ggccaacaagctc 262
>A9C11NP.R1 a9c11np.r1
Length = 476
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 5 gacgccgaccgcg 17
|||||||||||||
Sbjct: 354 gacgccgaccgcg 366
>A9B01NP.R1 a9b01np.r1
Length = 372
Score = 26.3 bits (13), Expect = 6.2
Identities = 23/25 (92%), Gaps = 1/25 (4%)
Strand = Plus / Plus
Query: 119 gcgccattacccgcgagctcaacgg 143
||||||||| || ||||||||||||
Sbjct: 179 gcgccatta-ccacgagctcaacgg 202
>A6B11NP.R1 a6b11np.r1
Length = 467
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 161 ctgctcgcgctgc 173
|||||||||||||
Sbjct: 167 ctgctcgcgctgc 155
>A5E02NP.R1 a5e02np.r1
Length = 446
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 112 aacgatggcgcca 124
|||||||||||||
Sbjct: 334 aacgatggcgcca 346
>A4F02NP.R1 a4f02np.r1
Length = 507
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 152 ccaaggctgctgc 164
|||||||||||||
Sbjct: 217 ccaaggctgctgc 229
>A3H04NP.R1 a3h04np.r1
Length = 505
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 99 caagctcgcgccc 111
|||||||||||||
Sbjct: 24 caagctcgcgccc 36
>A3A04NP.F1 a3a04np.f1
Length = 452
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 172 gccaaggagaagg 184
|||||||||||||
Sbjct: 234 gccaaggagaagg 222
>A1D03NP.F1 a1d03np.f1
Length = 426
Score = 26.3 bits (13), Expect = 6.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 56 tcaaggacgagga 68
|||||||||||||
Sbjct: 302 tcaaggacgagga 290
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 369
Number of Sequences: 2682
Number of extensions: 369
Number of successful extensions: 107
Number of sequences better than 10.0: 29
length of query: 463
length of database: 1,147,514
effective HSP length: 14
effective length of query: 449
effective length of database: 1,109,966
effective search space: 498374734
effective search space used: 498374734
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)