BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_G07_M14ZS5.se
q
(405 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
C5E04NP.F1 c5e04np.f1 32 0.087
C2G09NP.R1 c2g09np.r1 28 1.4
C2G08NP.R1 c2g08np.r1 28 1.4
C1G10NP.F1 c1g10np.f1 26 5.4
B6A08NP.F1 b6a08np.f1 26 5.4
A6D12NP.R1 a6d12np.r1 26 5.4
A3A08NP.R1 a3a08np.r1 26 5.4
>C5E04NP.F1 c5e04np.f1
Length = 520
Score = 32.2 bits (16), Expect = 0.087
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 258 ttacctcagcaccgtc 273
||||||||||||||||
Sbjct: 502 ttacctcagcaccgtc 487
>C2G09NP.R1 c2g09np.r1
Length = 485
Score = 28.2 bits (14), Expect = 1.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 348 cgactttctctctg 361
||||||||||||||
Sbjct: 457 cgactttctctctg 470
>C2G08NP.R1 c2g08np.r1
Length = 485
Score = 28.2 bits (14), Expect = 1.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 348 cgactttctctctg 361
||||||||||||||
Sbjct: 457 cgactttctctctg 470
>C1G10NP.F1 c1g10np.f1
Length = 384
Score = 26.3 bits (13), Expect = 5.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 58 ctgttgtgtttgg 70
|||||||||||||
Sbjct: 32 ctgttgtgtttgg 20
>B6A08NP.F1 b6a08np.f1
Length = 332
Score = 26.3 bits (13), Expect = 5.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 93 catcatgagtgga 105
|||||||||||||
Sbjct: 304 catcatgagtgga 292
>A6D12NP.R1 a6d12np.r1
Length = 550
Score = 26.3 bits (13), Expect = 5.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 128 gatggccttttgc 140
|||||||||||||
Sbjct: 353 gatggccttttgc 341
>A3A08NP.R1 a3a08np.r1
Length = 365
Score = 26.3 bits (13), Expect = 5.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 108 caaatacaagcgt 120
|||||||||||||
Sbjct: 66 caaatacaagcgt 54
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 212
Number of Sequences: 2682
Number of extensions: 212
Number of successful extensions: 44
Number of sequences better than 10.0: 7
length of query: 405
length of database: 1,147,514
effective HSP length: 14
effective length of query: 391
effective length of database: 1,109,966
effective search space: 433996706
effective search space used: 433996706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)