BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_H04_O08ZS5.se
q
(575 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A1B11NP.R1 a1b11np.r1 32 0.13
A5H05NP.R1 a5h05np.r1 30 0.50
C5F03NP.F1 c5f03np.f1 28 2.0
C4D03NP.F1 c4d03np.f1 28 2.0
C3B02NP.F1 c3b02np.f1 28 2.0
C2G12NP.F1 c2g12np.f1 28 2.0
C2E07NP.F1 c2e07np.f1 28 2.0
B7H02NP.F1 b7h02np.f1 28 2.0
B7C04NP.F1 b7c04np.f1 28 2.0
B6E07NP.F1 b6e07np.f1 28 2.0
B5F04NP.R1 b5f04np.r1 28 2.0
B3H09NP.F1 b3h09np.f1 28 2.0
B2F11NP.F1 b2f11np.f1 28 2.0
B2B10NP.R1 b2b10np.r1 28 2.0
B1C10NP.R1 b1c10np.r1 28 2.0
B1A03NP.F1 b1a03np.f1 28 2.0
A5D09NP.R1 a5d09np.r1 28 2.0
A4A02NP.F1 a4a02np.f1 28 2.0
A3F09NP.R1 a3f09np.r1 28 2.0
A3B10NP.F1 a3b10np.f1 28 2.0
A2G05NP.F1 a2g05np.f1 28 2.0
C5H04NP.R1 c5h04np.r1 26 7.7
C5D05NP.R1 c5d05np.r1 26 7.7
C4B10NP.F1 c4b10np.f1 26 7.7
C3G11NP.R1 c3g11np.r1 26 7.7
C3G03NP.R1 c3g03np.r1 26 7.7
C3A03NP.R1 c3a03np.r1 26 7.7
C2B08NP.R1 c2b08np.r1 26 7.7
C1E08NP.R1 c1e08np.r1 26 7.7
B7D10NP.R1 b7d10np.r1 26 7.7
B5A06NP.R1 b5a06np.r1 26 7.7
B4H11NP.F1 b4h11np.f1 26 7.7
B3D07NP.R1 b3d07np.r1 26 7.7
B1H06NP.F1 b1h06np.f1 26 7.7
B1H04NP.R1 b1h04np.r1 26 7.7
B1G10NP.R1 b1g10np.r1 26 7.7
B1G02NP.F1 b1g02np.f1 26 7.7
B1F03NP.F1 b1f03np.f1 26 7.7
B1C12NP.R1 b1c12np.r1 26 7.7
B1B11NP.F1 b1b11np.f1 26 7.7
A9G05NP.R1 a9g05np.r1 26 7.7
A9D03NP.F1 a9d03np.f1 26 7.7
A9A02NP.R1 a9a02np.r1 26 7.7
A8E02NP.F1 a8e02np.f1 26 7.7
A7G05NP.F1 a7g05np.f1 26 7.7
A6B06NP.F1 a6b06np.f1 26 7.7
A5A11NP.F1 a5a11np.f1 26 7.7
A3D03NP.R1 a3d03np.r1 26 7.7
A3C05NP.F1 a3c05np.f1 26 7.7
A3A10NP.F1 a3a10np.f1 26 7.7
A3A06NP.F1 a3a06np.f1 26 7.7
A2C03NP.R1 a2c03np.r1 26 7.7
>A1B11NP.R1 a1b11np.r1
Length = 531
Score = 32.2 bits (16), Expect = 0.13
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 14 ttcgaggaggctcagaagaa 33
|||||||||||| |||||||
Sbjct: 227 ttcgaggaggctgagaagaa 246
>A5H05NP.R1 a5h05np.r1
Length = 532
Score = 30.2 bits (15), Expect = 0.50
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 300 ttgacatcgacaaca 314
|||||||||||||||
Sbjct: 266 ttgacatcgacaaca 280
>C5F03NP.F1 c5f03np.f1
Length = 600
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 130 agaaggctattgag 117
>C4D03NP.F1 c4d03np.f1
Length = 231
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 89 agaaggctattgag 76
>C3B02NP.F1 c3b02np.f1
Length = 387
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 aggctcagaagaag 34
||||||||||||||
Sbjct: 258 aggctcagaagaag 245
>C2G12NP.F1 c2g12np.f1
Length = 568
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 133 agaaggctattgag 120
>C2E07NP.F1 c2e07np.f1
Length = 450
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 gccaaggataaggc 60
||||||||||||||
Sbjct: 270 gccaaggataaggc 257
>B7H02NP.F1 b7h02np.f1
Length = 367
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 132 agaaggctattgag 119
>B7C04NP.F1 b7c04np.f1
Length = 292
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 89 agaaggctattgag 76
>B6E07NP.F1 b6e07np.f1
Length = 331
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 130 agaaggctattgag 117
>B5F04NP.R1 b5f04np.r1
Length = 498
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 aaggccctcaaggg 84
||||||||||||||
Sbjct: 397 aaggccctcaaggg 410
>B3H09NP.F1 b3h09np.f1
Length = 512
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 89 agaaggctattgag 76
>B2F11NP.F1 b2f11np.f1
Length = 448
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 125 agaaggctattgag 112
>B2B10NP.R1 b2b10np.r1
Length = 523
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 303 acatcgacaacacc 316
||||||||||||||
Sbjct: 19 acatcgacaacacc 32
>B1C10NP.R1 b1c10np.r1
Length = 542
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 248 cttccagagggaat 261
||||||||||||||
Sbjct: 113 cttccagagggaat 100
>B1A03NP.F1 b1a03np.f1
Length = 369
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 89 agaaggctattgag 76
>A5D09NP.R1 a5d09np.r1
Length = 493
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 255 agggaatcgccggt 268
||||||||||||||
Sbjct: 218 agggaatcgccggt 205
>A4A02NP.F1 a4a02np.f1
Length = 437
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 298 gattgacatcgaca 311
||||||||||||||
Sbjct: 266 gattgacatcgaca 279
>A3F09NP.R1 a3f09np.r1
Length = 573
Score = 28.2 bits (14), Expect = 2.0
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 187 caaggacttcaagaaggagctt 208
|||||||| | |||||||||||
Sbjct: 346 caaggactgccagaaggagctt 367
>A3B10NP.F1 a3b10np.f1
Length = 532
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 gaggccgccaagga 192
||||||||||||||
Sbjct: 527 gaggccgccaagga 514
>A2G05NP.F1 a2g05np.f1
Length = 369
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattgag 178
||||||||||||||
Sbjct: 89 agaaggctattgag 76
>C5H04NP.R1 c5h04np.r1
Length = 381
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 366 gcgaggctctatt 378
|||||||||||||
Sbjct: 214 gcgaggctctatt 226
>C5D05NP.R1 c5d05np.r1
Length = 425
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 397 caagttcaacgac 409
|||||||||||||
Sbjct: 311 caagttcaacgac 323
>C4B10NP.F1 c4b10np.f1
Length = 395
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 272 gtgtttatcatta 284
|||||||||||||
Sbjct: 298 gtgtttatcatta 310
>C3G11NP.R1 c3g11np.r1
Length = 528
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 180 aggccgccaagga 192
|||||||||||||
Sbjct: 412 aggccgccaagga 424
>C3G03NP.R1 c3g03np.r1
Length = 257
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 239 gatgatcctcttc 251
|||||||||||||
Sbjct: 63 gatgatcctcttc 51
>C3A03NP.R1 c3a03np.r1
Length = 495
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 180 aggccgccaagga 192
|||||||||||||
Sbjct: 281 aggccgccaagga 293
>C2B08NP.R1 c2b08np.r1
Length = 480
Score = 26.3 bits (13), Expect = 7.7
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 116 gagcctgagcttcaggt 132
|||||||||||| ||||
Sbjct: 296 gagcctgagcttgaggt 280
>C1E08NP.R1 c1e08np.r1
Length = 466
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 329 ttgaagttgctgg 341
|||||||||||||
Sbjct: 184 ttgaagttgctgg 196
>B7D10NP.R1 b7d10np.r1
Length = 499
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 180 aggccgccaagga 192
|||||||||||||
Sbjct: 304 aggccgccaagga 316
>B5A06NP.R1 b5a06np.r1
Length = 548
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 441 ggcgcctctgcct 453
|||||||||||||
Sbjct: 220 ggcgcctctgcct 208
>B4H11NP.F1 b4h11np.f1
Length = 579
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 437 tatgggcgcctct 449
|||||||||||||
Sbjct: 483 tatgggcgcctct 471
>B3D07NP.R1 b3d07np.r1
Length = 551
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 329 ttgaagttgctgg 341
|||||||||||||
Sbjct: 209 ttgaagttgctgg 221
>B1H06NP.F1 b1h06np.f1
Length = 454
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 112 caacgagcctgag 124
|||||||||||||
Sbjct: 318 caacgagcctgag 306
>B1H04NP.R1 b1h04np.r1
Length = 525
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 32 aagctcgccgagg 44
|||||||||||||
Sbjct: 424 aagctcgccgagg 436
>B1G10NP.R1 b1g10np.r1
Length = 468
Score = 26.3 bits (13), Expect = 7.7
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 391 caaccgcaagttcaacg 407
||||| |||||||||||
Sbjct: 447 caaccacaagttcaacg 463
>B1G02NP.F1 b1g02np.f1
Length = 478
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 115 cgagcctgagctt 127
|||||||||||||
Sbjct: 379 cgagcctgagctt 391
>B1F03NP.F1 b1f03np.f1
Length = 526
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 112 caacgagcctgag 124
|||||||||||||
Sbjct: 55 caacgagcctgag 43
>B1C12NP.R1 b1c12np.r1
Length = 448
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 173 attgaggaggccg 185
|||||||||||||
Sbjct: 400 attgaggaggccg 412
>B1B11NP.F1 b1b11np.f1
Length = 498
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 167 aaggctattgagg 179
|||||||||||||
Sbjct: 363 aaggctattgagg 351
>A9G05NP.R1 a9g05np.r1
Length = 510
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 57 aggccaagtacca 69
|||||||||||||
Sbjct: 384 aggccaagtacca 396
>A9D03NP.F1 a9d03np.f1
Length = 449
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 276 ttatcattagcgg 288
|||||||||||||
Sbjct: 77 ttatcattagcgg 89
>A9A02NP.R1 a9a02np.r1
Length = 400
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 397 caagttcaacgac 409
|||||||||||||
Sbjct: 311 caagttcaacgac 323
>A8E02NP.F1 a8e02np.f1
Length = 423
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 308 gacaacaccttcg 320
|||||||||||||
Sbjct: 373 gacaacaccttcg 361
>A7G05NP.F1 a7g05np.f1
Length = 438
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 165 agaaggctattga 177
|||||||||||||
Sbjct: 250 agaaggctattga 238
>A6B06NP.F1 a6b06np.f1
Length = 479
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 318 tcgaggccagatt 330
|||||||||||||
Sbjct: 271 tcgaggccagatt 259
>A5A11NP.F1 a5a11np.f1
Length = 326
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 383 aagaaccccaacc 395
|||||||||||||
Sbjct: 43 aagaaccccaacc 55
>A3D03NP.R1 a3d03np.r1
Length = 549
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 75 ccctcaagggtct 87
|||||||||||||
Sbjct: 477 ccctcaagggtct 489
>A3C05NP.F1 a3c05np.f1
Length = 418
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 114 acgagcctgagct 126
|||||||||||||
Sbjct: 321 acgagcctgagct 333
>A3A10NP.F1 a3a10np.f1
Length = 411
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 215 gacatcacagcca 227
|||||||||||||
Sbjct: 128 gacatcacagcca 116
>A3A06NP.F1 a3a06np.f1
Length = 546
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 160 tgtcaagaaggct 172
|||||||||||||
Sbjct: 458 tgtcaagaaggct 446
>A2C03NP.R1 a2c03np.r1
Length = 552
Score = 26.3 bits (13), Expect = 7.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 397 caagttcaacgac 409
|||||||||||||
Sbjct: 298 caagttcaacgac 310
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 431
Number of Sequences: 2682
Number of extensions: 431
Number of successful extensions: 120
Number of sequences better than 10.0: 53
length of query: 575
length of database: 1,147,514
effective HSP length: 14
effective length of query: 561
effective length of database: 1,109,966
effective search space: 622690926
effective search space used: 622690926
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)