BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1606_H11_O22ZS5.se
q
(460 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A1D04NP.R1 a1d04np.r1 34 0.025
B3E05NP.R1 b3e05np.r1 30 0.39
A9F12NP.F1 a9f12np.f1 30 0.39
B7C02NP.R1 b7c02np.r1 28 1.6
B2H12NP.F1 b2h12np.f1 28 1.6
A1G12NP.R1 a1g12np.r1 28 1.6
C3E06NP.R1 c3e06np.r1 26 6.1
C3D05NP.R1 c3d05np.r1 26 6.1
C1H04NP.F1 c1h04np.f1 26 6.1
C1E12NP.F1 c1e12np.f1 26 6.1
B8A01NP.R1 b8a01np.r1 26 6.1
B5H05NP.R1 b5h05np.r1 26 6.1
B2A10NP.R1 b2a10np.r1 26 6.1
A9G07NP.F1 a9g07np.f1 26 6.1
A8A05NP.R1 a8a05np.r1 26 6.1
A1C06NP.R1 a1c06np.r1 26 6.1
>A1D04NP.R1 a1d04np.r1
Length = 483
Score = 34.2 bits (17), Expect = 0.025
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 169 aacgctgctcgcgacgg 185
|||||||||||||||||
Sbjct: 96 aacgctgctcgcgacgg 80
>B3E05NP.R1 b3e05np.r1
Length = 514
Score = 30.2 bits (15), Expect = 0.39
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 284 gtgttctccccaaca 298
|||||||||||||||
Sbjct: 21 gtgttctccccaaca 7
>A9F12NP.F1 a9f12np.f1
Length = 515
Score = 30.2 bits (15), Expect = 0.39
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 tgctcccgtctacct 119
|||||||||||||||
Sbjct: 43 tgctcccgtctacct 57
>B7C02NP.R1 b7c02np.r1
Length = 389
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 gctgaacaagcttt 256
||||||||||||||
Sbjct: 74 gctgaacaagcttt 61
>B2H12NP.F1 b2h12np.f1
Length = 255
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 289 ctccccaacatcca 302
||||||||||||||
Sbjct: 235 ctccccaacatcca 248
>A1G12NP.R1 a1g12np.r1
Length = 565
Score = 28.2 bits (14), Expect = 1.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 cgctgccgtcctcg 133
||||||||||||||
Sbjct: 561 cgctgccgtcctcg 548
>C3E06NP.R1 c3e06np.r1
Length = 463
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 92 gtgtcggtgccgg 104
|||||||||||||
Sbjct: 3 gtgtcggtgccgg 15
>C3D05NP.R1 c3d05np.r1
Length = 488
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 122 ctgccgtcctcga 134
|||||||||||||
Sbjct: 261 ctgccgtcctcga 273
>C1H04NP.F1 c1h04np.f1
Length = 482
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 378 tctgtttttccat 390
|||||||||||||
Sbjct: 451 tctgtttttccat 463
>C1E12NP.F1 c1e12np.f1
Length = 558
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 14 tcgcgttcctcca 26
|||||||||||||
Sbjct: 378 tcgcgttcctcca 390
>B8A01NP.R1 b8a01np.r1
Length = 182
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 240 ggagctgaacaag 252
|||||||||||||
Sbjct: 15 ggagctgaacaag 27
>B5H05NP.R1 b5h05np.r1
Length = 429
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 121 gctgccgtcctcg 133
|||||||||||||
Sbjct: 101 gctgccgtcctcg 89
>B2A10NP.R1 b2a10np.r1
Length = 539
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 88 cagcgtgtcggtg 100
|||||||||||||
Sbjct: 312 cagcgtgtcggtg 324
>A9G07NP.F1 a9g07np.f1
Length = 468
Score = 26.3 bits (13), Expect = 6.1
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 202 atcccccgtcatcttca 218
||||||||||| |||||
Sbjct: 214 atcccccgtcaacttca 230
>A8A05NP.R1 a8a05np.r1
Length = 463
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 241 gagctgaacaagc 253
|||||||||||||
Sbjct: 344 gagctgaacaagc 356
>A1C06NP.R1 a1c06np.r1
Length = 466
Score = 26.3 bits (13), Expect = 6.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 88 cagcgtgtcggtg 100
|||||||||||||
Sbjct: 297 cagcgtgtcggtg 309
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 365
Number of Sequences: 2682
Number of extensions: 365
Number of successful extensions: 90
Number of sequences better than 10.0: 16
length of query: 460
length of database: 1,147,514
effective HSP length: 14
effective length of query: 446
effective length of database: 1,109,966
effective search space: 495044836
effective search space used: 495044836
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)