BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1607_A11_B21ZS5.se
q
(296 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
C5A03NP.F1 c5a03np.f1 32 0.063
B1C10NP.F1 b1c10np.f1 32 0.063
C2D02NP.R1 c2d02np.r1 28 0.98
C3E06NP.R1 c3e06np.r1 26 3.9
B1G12NP.F1 b1g12np.f1 26 3.9
A8C06NP.F1 a8c06np.f1 26 3.9
>C5A03NP.F1 c5a03np.f1
Length = 562
Score = 32.2 bits (16), Expect = 0.063
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 118 caagaacatcacggcc 133
||||||||||||||||
Sbjct: 467 caagaacatcacggcc 452
>B1C10NP.F1 b1c10np.f1
Length = 486
Score = 32.2 bits (16), Expect = 0.063
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 118 caagaacatcacggcc 133
||||||||||||||||
Sbjct: 467 caagaacatcacggcc 452
>C2D02NP.R1 c2d02np.r1
Length = 406
Score = 28.2 bits (14), Expect = 0.98
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 ttccctccctctct 198
||||||||||||||
Sbjct: 142 ttccctccctctct 155
>C3E06NP.R1 c3e06np.r1
Length = 463
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 180 atgccttccctcc 192
|||||||||||||
Sbjct: 355 atgccttccctcc 343
>B1G12NP.F1 b1g12np.f1
Length = 560
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 183 ccttccctccctc 195
|||||||||||||
Sbjct: 524 ccttccctccctc 512
>A8C06NP.F1 a8c06np.f1
Length = 345
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 aagatttggacat 115
|||||||||||||
Sbjct: 271 aagatttggacat 259
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112
Number of Sequences: 2682
Number of extensions: 112
Number of successful extensions: 20
Number of sequences better than 10.0: 6
length of query: 296
length of database: 1,147,514
effective HSP length: 14
effective length of query: 282
effective length of database: 1,109,966
effective search space: 313010412
effective search space used: 313010412
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)