BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1607_B02_D03ZS5.se
q
         (91 letters)

Database: /phillip/Ncr/np_est
           2682 sequences; 1,147,514 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

C2E12NP.F1 c2e12np.f1                                                  24  4.3
B4D12NP.F1 b4d12np.f1                                                  24  4.3
B3C12NP.R1 b3c12np.r1                                                  24  4.3
A7E02NP.F1 a7e02np.f1                                                  24  4.3
A2C05NP.R1 a2c05np.r1                                                  24  4.3

>C2E12NP.F1 c2e12np.f1
          Length = 145

 Score = 24.3 bits (12), Expect = 4.3
 Identities = 12/12 (100%)
 Strand = Plus / Minus

                      
Query: 4  ttagtttagtaa 15
          ||||||||||||
Sbjct: 67 ttagtttagtaa 56



>B4D12NP.F1 b4d12np.f1
          Length = 447

 Score = 24.3 bits (12), Expect = 4.3
 Identities = 12/12 (100%)
 Strand = Plus / Minus

                      
Query: 42 ttgaaatgaaat 53
          ||||||||||||
Sbjct: 25 ttgaaatgaaat 14



>B3C12NP.R1 b3c12np.r1
          Length = 475

 Score = 24.3 bits (12), Expect = 4.3
 Identities = 12/12 (100%)
 Strand = Plus / Plus

                       
Query: 29  gctggagcgccg 40
           ||||||||||||
Sbjct: 425 gctggagcgccg 436



>A7E02NP.F1 a7e02np.f1
          Length = 361

 Score = 24.3 bits (12), Expect = 4.3
 Identities = 12/12 (100%)
 Strand = Plus / Minus

                      
Query: 42 ttgaaatgaaat 53
          ||||||||||||
Sbjct: 25 ttgaaatgaaat 14



>A2C05NP.R1 a2c05np.r1
          Length = 133

 Score = 24.3 bits (12), Expect = 4.3
 Identities = 12/12 (100%)
 Strand = Plus / Plus

                       
Query: 29  gctggagcgccg 40
           ||||||||||||
Sbjct: 93  gctggagcgccg 104



  Database: /phillip/Ncr/np_est
    Posted date:  Jan 27, 2002  3:48 PM
  Number of letters in database: 1,147,514
  Number of sequences in database:  2682
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24
Number of Sequences: 2682
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 5
length of query: 91
length of database: 1,147,514
effective HSP length: 13
effective length of query: 78
effective length of database: 1,112,648
effective search space: 86786544
effective search space used: 86786544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)