TBLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1607_B02_D03ZS5.se
q
         (91 letters)

Database: /phillip/Ncr/np_est
           2682 sequences; 1,147,514 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

A1C11NP.F1 a1c11np.f1                                                  20  2.7
C3F01NP.F1 c3f01np.f1                                                  19  3.7
B4A06NP.R1 b4a06np.r1                                                  19  5.0
B5E09NP.F1 b5e09np.f1                                                  19  5.0
C2E12NP.R1 c2e12np.r1                                                  18  6.9
A6C07NP.R1 a6c07np.r1                                                  18  6.9
A1C10NP.R1 a1c10np.r1                                                  18  9.5
A1D10NP.F1 a1d10np.f1                                                  18  9.5

>A1C11NP.F1 a1c11np.f1
          Length = 574

 Score = 19.8 bits (37), Expect = 2.7
 Identities = 6/14 (42%), Positives = 10/14 (70%)
 Frame = -3 / -3

                         
Query: 62  CQIISFQSALQRRL 21
           CQI +  S +++RL
Sbjct: 548 CQIENIASPIEKRL 507



>C3F01NP.F1 c3f01np.f1
          Length = 514

 Score = 19.4 bits (36), Expect = 3.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1 / -3

                     
Query: 79  RYYRLTVKSF 50
           R+YR  V SF
Sbjct: 104 RHYRQAVFSF 75



>B4A06NP.R1 b4a06np.r1
          Length = 537

 Score = 18.9 bits (35), Expect = 5.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1 / -2

                    
Query: 16  *ASRRWSAD 42
           * SRRW AD
Sbjct: 311 *CSRRWPAD 285



>B5E09NP.F1 b5e09np.f1
          Length = 439

 Score = 18.9 bits (35), Expect = 5.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2 / +1

                     
Query: 54  HFISIGAPAT 25
           HFIS  APAT
Sbjct: 394 HFISPLAPAT 423



>C2E12NP.R1 c2e12np.r1
          Length = 521

 Score = 18.5 bits (34), Expect = 6.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1 / -1

                       
Query: 61  VKSFHFNRRSSD 26
           V+  H  RRS+D
Sbjct: 341 VRIGHAGRRSAD 306



>A6C07NP.R1 a6c07np.r1
          Length = 373

 Score = 18.5 bits (34), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1 / +2

                    
Query: 55  I*QLICNIY 81
           +* LIC+IY
Sbjct: 254 L*LLICHIY 280



>A1C10NP.R1 a1c10np.r1
          Length = 417

 Score = 18.0 bits (33), Expect = 9.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3 / -1

                       
Query: 3   FSLVMSKSSLER 38
           FS     SSLER
Sbjct: 312 FSRTREASSLER 277



>A1D10NP.F1 a1d10np.f1
          Length = 478

 Score = 18.0 bits (33), Expect = 9.5
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -3 / +1

                       
Query: 62  CQIISFQSALQR 27
           C+I   Q ++QR
Sbjct: 355 CEITILQISIQR 390



  Database: /phillip/Ncr/np_est
    Posted date:  Jan 27, 2002  3:48 PM
  Number of letters in database: 1,147,514
  Number of sequences in database:  2682
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 164377
Number of Sequences: 2682
Number of extensions: 553
Number of successful extensions: 102
Number of sequences better than 10.0: 8
length of query: 30
length of database: 382,504
effective HSP length: 22
effective length of query: 7
effective length of database: 323,500
effective search space:  2264500
effective search space used:  2264500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 33 (18.0 bits)