BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1607_D08_H15ZS5.se
q
(246 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B3C06NP.R1 b3c06np.r1 30 0.20
B8G09NP.F1 b8g09np.f1 28 0.81
A6D12NP.F1 a6d12np.f1 28 0.81
C2H07NP.R1 c2h07np.r1 26 3.2
B8C09NP.R1 b8c09np.r1 26 3.2
B3H02NP.F1 b3h02np.f1 26 3.2
A4G06NP.R1 a4g06np.r1 26 3.2
A3G02NP.F1 a3g02np.f1 26 3.2
A2D02NP.R1 a2d02np.r1 26 3.2
>B3C06NP.R1 b3c06np.r1
Length = 436
Score = 30.2 bits (15), Expect = 0.20
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 ctggactggactgga 176
|||||||||||||||
Sbjct: 45 ctggactggactgga 31
Score = 30.2 bits (15), Expect = 0.20
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 ctggactggactgga 176
|||||||||||||||
Sbjct: 40 ctggactggactgga 26
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 162 ctggactggactg 174
|||||||||||||
Sbjct: 35 ctggactggactg 23
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 164 ggactggactgga 176
|||||||||||||
Sbjct: 48 ggactggactgga 36
>B8G09NP.F1 b8g09np.f1
Length = 205
Score = 28.2 bits (14), Expect = 0.81
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 aaagaagtaaaagg 115
||||||||||||||
Sbjct: 116 aaagaagtaaaagg 103
>A6D12NP.F1 a6d12np.f1
Length = 519
Score = 28.2 bits (14), Expect = 0.81
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 catgtccatggaag 16
||||||||||||||
Sbjct: 83 catgtccatggaag 70
>C2H07NP.R1 c2h07np.r1
Length = 538
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 140 aggcgttgacgaa 152
|||||||||||||
Sbjct: 113 aggcgttgacgaa 101
>B8C09NP.R1 b8c09np.r1
Length = 526
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 125 tattttggcattg 137
|||||||||||||
Sbjct: 359 tattttggcattg 347
>B3H02NP.F1 b3h02np.f1
Length = 318
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 103 aagaagtaaaagg 115
|||||||||||||
Sbjct: 229 aagaagtaaaagg 241
>A4G06NP.R1 a4g06np.r1
Length = 474
Score = 26.3 bits (13), Expect = 3.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 105 gaagtaaaagggcgtca 121
||||| |||||||||||
Sbjct: 442 gaagtcaaagggcgtca 458
>A3G02NP.F1 a3g02np.f1
Length = 515
Score = 26.3 bits (13), Expect = 3.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 105 gaagtaaaagggcgtca 121
||||| |||||||||||
Sbjct: 266 gaagtcaaagggcgtca 282
>A2D02NP.R1 a2d02np.r1
Length = 529
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 58 gagcgtcacggtt 70
|||||||||||||
Sbjct: 421 gagcgtcacggtt 433
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171
Number of Sequences: 2682
Number of extensions: 171
Number of successful extensions: 44
Number of sequences better than 10.0: 9
length of query: 246
length of database: 1,147,514
effective HSP length: 14
effective length of query: 232
effective length of database: 1,109,966
effective search space: 257512112
effective search space used: 257512112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)