BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1607_G08_N15ZS5.se
q
(156 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B2H12NP.F1 b2h12np.f1 28 0.50
A8H07NP.R1 a8h07np.r1 26 2.0
A6C05NP.R1 a6c05np.r1 26 2.0
C5F03NP.F1 c5f03np.f1 24 7.8
C4D03NP.F1 c4d03np.f1 24 7.8
C4B09NP.F1 c4b09np.f1 24 7.8
C3H01NP.F1 c3h01np.f1 24 7.8
C3C01NP.F1 c3c01np.f1 24 7.8
C2G12NP.F1 c2g12np.f1 24 7.8
B8A05NP.F1 b8a05np.f1 24 7.8
B7H02NP.F1 b7h02np.f1 24 7.8
B7F12NP.F1 b7f12np.f1 24 7.8
B7C04NP.F1 b7c04np.f1 24 7.8
B6H07NP.R1 b6h07np.r1 24 7.8
B6F01NP.F1 b6f01np.f1 24 7.8
B6E07NP.F1 b6e07np.f1 24 7.8
B4E12NP.R1 b4e12np.r1 24 7.8
B3H09NP.F1 b3h09np.f1 24 7.8
B3B07NP.F1 b3b07np.f1 24 7.8
B2F11NP.F1 b2f11np.f1 24 7.8
B1H02NP.F1 b1h02np.f1 24 7.8
B1E08NP.R1 b1e08np.r1 24 7.8
B1A03NP.F1 b1a03np.f1 24 7.8
A9G06NP.F1 a9g06np.f1 24 7.8
A9F07NP.F1 a9f07np.f1 24 7.8
A9D12NP.F1 a9d12np.f1 24 7.8
A8G10NP.F1 a8g10np.f1 24 7.8
A6D05NP.R1 a6d05np.r1 24 7.8
A5H07NP.R1 a5h07np.r1 24 7.8
A5G01NP.F1 a5g01np.f1 24 7.8
A4D04NP.F1 a4d04np.f1 24 7.8
A4A02NP.R1 a4a02np.r1 24 7.8
A3H01NP.R1 a3h01np.r1 24 7.8
A2G05NP.F1 a2g05np.f1 24 7.8
>B2H12NP.F1 b2h12np.f1
Length = 255
Score = 28.2 bits (14), Expect = 0.50
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 tccctgctccccaa 46
||||||||||||||
Sbjct: 229 tccctgctccccaa 242
>A8H07NP.R1 a8h07np.r1
Length = 467
Score = 26.3 bits (13), Expect = 2.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 54 actactgtggtgt 66
|||||||||||||
Sbjct: 154 actactgtggtgt 166
>A6C05NP.R1 a6c05np.r1
Length = 503
Score = 26.3 bits (13), Expect = 2.0
Identities = 19/21 (90%)
Strand = Plus / Plus
Query: 18 ggcccgctggggggttccctg 38
||||||| ||||||||||||
Sbjct: 220 ggcccgcctgggggttccctg 240
>C5F03NP.F1 c5f03np.f1
Length = 600
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 95 ggcaaggtcgtc 84
>C4D03NP.F1 c4d03np.f1
Length = 231
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 54 ggcaaggtcgtc 43
>C4B09NP.F1 c4b09np.f1
Length = 486
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 88 gcgagatatcgt 99
||||||||||||
Sbjct: 448 gcgagatatcgt 459
>C3H01NP.F1 c3h01np.f1
Length = 490
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 100 ctgtggtgttgg 111
>C3C01NP.F1 c3c01np.f1
Length = 446
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 73 ctgtggtgttgg 84
>C2G12NP.F1 c2g12np.f1
Length = 568
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 98 ggcaaggtcgtc 87
>B8A05NP.F1 b8a05np.f1
Length = 397
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 67 ctgtggtgttgg 78
>B7H02NP.F1 b7h02np.f1
Length = 367
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 97 ggcaaggtcgtc 86
>B7F12NP.F1 b7f12np.f1
Length = 422
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 104 ctgtggtgttgg 115
>B7C04NP.F1 b7c04np.f1
Length = 292
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 54 ggcaaggtcgtc 43
>B6H07NP.R1 b6h07np.r1
Length = 512
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 59 tgtggtgttgga 70
||||||||||||
Sbjct: 149 tgtggtgttgga 138
>B6F01NP.F1 b6f01np.f1
Length = 430
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 100 ctgtggtgttgg 111
>B6E07NP.F1 b6e07np.f1
Length = 331
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 95 ggcaaggtcgtc 84
>B4E12NP.R1 b4e12np.r1
Length = 390
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 64 tgttggaactgg 75
||||||||||||
Sbjct: 277 tgttggaactgg 266
>B3H09NP.F1 b3h09np.f1
Length = 512
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 54 ggcaaggtcgtc 43
>B3B07NP.F1 b3b07np.f1
Length = 480
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 94 ctgtggtgttgg 105
>B2F11NP.F1 b2f11np.f1
Length = 448
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 90 ggcaaggtcgtc 79
>B1H02NP.F1 b1h02np.f1
Length = 379
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 62 ggtgttggaact 73
||||||||||||
Sbjct: 211 ggtgttggaact 200
>B1E08NP.R1 b1e08np.r1
Length = 430
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 84 tccagcgagata 95
||||||||||||
Sbjct: 182 tccagcgagata 171
>B1A03NP.F1 b1a03np.f1
Length = 369
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 54 ggcaaggtcgtc 43
>A9G06NP.F1 a9g06np.f1
Length = 488
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 100 ctgtggtgttgg 111
>A9F07NP.F1 a9f07np.f1
Length = 419
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 70 ctgtggtgttgg 81
>A9D12NP.F1 a9d12np.f1
Length = 488
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 100 ctgtggtgttgg 111
>A8G10NP.F1 a8g10np.f1
Length = 258
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 103 ctgtggtgttgg 114
>A6D05NP.R1 a6d05np.r1
Length = 530
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 59 tgtggtgttgga 70
||||||||||||
Sbjct: 135 tgtggtgttgga 124
>A5H07NP.R1 a5h07np.r1
Length = 400
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 59 tgtggtgttgga 70
||||||||||||
Sbjct: 272 tgtggtgttgga 261
>A5G01NP.F1 a5g01np.f1
Length = 471
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 59 tgtggtgttgga 70
||||||||||||
Sbjct: 248 tgtggtgttgga 237
>A4D04NP.F1 a4d04np.f1
Length = 437
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 58 ctgtggtgttgg 69
||||||||||||
Sbjct: 89 ctgtggtgttgg 100
>A4A02NP.R1 a4a02np.r1
Length = 469
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 59 tgtggtgttgga 70
||||||||||||
Sbjct: 67 tgtggtgttgga 56
>A3H01NP.R1 a3h01np.r1
Length = 537
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 138 agatttctggaa 149
||||||||||||
Sbjct: 471 agatttctggaa 482
>A2G05NP.F1 a2g05np.f1
Length = 369
Score = 24.3 bits (12), Expect = 7.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 74 ggcaaggtcgtc 85
||||||||||||
Sbjct: 54 ggcaaggtcgtc 43
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100
Number of Sequences: 2682
Number of extensions: 100
Number of successful extensions: 34
Number of sequences better than 10.0: 34
length of query: 156
length of database: 1,147,514
effective HSP length: 13
effective length of query: 143
effective length of database: 1,112,648
effective search space: 159108664
effective search space used: 159108664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)