BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1607_H04_P07ZS5.se
q
         (110 letters)

Database: /phillip/Ncr/np_est
           2682 sequences; 1,147,514 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

A9B09NP.R1 a9b09np.r1                                                  28  0.34
B5F03NP.R1 b5f03np.r1                                                  24  5.3
B5D04NP.R1 b5d04np.r1                                                  24  5.3
B1A09NP.R1 b1a09np.r1                                                  24  5.3
A2H02NP.R1 a2h02np.r1                                                  24  5.3

>A9B09NP.R1 a9b09np.r1
          Length = 486

 Score = 28.2 bits (14), Expect = 0.34
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 8   gttggccattgtcg 21
           ||||||||||||||
Sbjct: 442 gttggccattgtcg 429



>B5F03NP.R1 b5f03np.r1
          Length = 443

 Score = 24.3 bits (12), Expect = 5.3
 Identities = 12/12 (100%)
 Strand = Plus / Plus

                       
Query: 91  tataatacccaa 102
           ||||||||||||
Sbjct: 337 tataatacccaa 348



>B5D04NP.R1 b5d04np.r1
          Length = 475

 Score = 24.3 bits (12), Expect = 5.3
 Identities = 12/12 (100%)
 Strand = Plus / Minus

                      
Query: 16 ttgtcgttgtga 27
          ||||||||||||
Sbjct: 63 ttgtcgttgtga 52



>B1A09NP.R1 b1a09np.r1
          Length = 493

 Score = 24.3 bits (12), Expect = 5.3
 Identities = 12/12 (100%)
 Strand = Plus / Minus

                       
Query: 28  aggagatatcaa 39
           ||||||||||||
Sbjct: 276 aggagatatcaa 265



>A2H02NP.R1 a2h02np.r1
          Length = 153

 Score = 24.3 bits (12), Expect = 5.3
 Identities = 12/12 (100%)
 Strand = Plus / Minus

                       
Query: 16  ttgtcgttgtga 27
           ||||||||||||
Sbjct: 144 ttgtcgttgtga 133



  Database: /phillip/Ncr/np_est
    Posted date:  Jan 27, 2002  3:48 PM
  Number of letters in database: 1,147,514
  Number of sequences in database:  2682
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33
Number of Sequences: 2682
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 5
length of query: 110
length of database: 1,147,514
effective HSP length: 13
effective length of query: 97
effective length of database: 1,112,648
effective search space: 107926856
effective search space used: 107926856
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)