TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1607_H04_P07ZS5.se
q
(110 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B4C04NP.F1 b4c04np.f1 20 0.22
A3F02NP.R1 a3f02np.r1 23 0.27
A9G02NP.R1 a9g02np.r1 22 0.70
A3H07NP.R1 a3h07np.r1 22 0.70
B3H08NP.F1 b3h08np.f1 22 0.70
A9D08NP.R1 a9d08np.r1 22 0.70
C3B05NP.R1 c3b05np.r1 22 0.70
B5E11NP.R1 b5e11np.r1 22 0.70
B1B07NP.R1 b1b07np.r1 22 0.70
B3B06NP.F1 b3b06np.f1 22 0.70
B3B06NP.R1 b3b06np.r1 22 0.70
C3A01NP.R1 c3a01np.r1 22 0.70
A2E11NP.R1 a2e11np.r1 22 0.70
A9B07NP.R1 a9b07np.r1 20 1.8
B8C11NP.F1 b8c11np.f1 20 1.8
A6D11NP.F1 a6d11np.f1 20 2.5
C1F03NP.F1 c1f03np.f1 20 2.5
C4H09NP.R1 c4h09np.r1 20 2.5
A6B10NP.F1 a6b10np.f1 20 2.5
A1G03NP.R1 a1g03np.r1 20 2.5
A1C03NP.R1 a1c03np.r1 20 2.5
B3A06NP.R1 b3a06np.r1 20 2.5
B2A07NP.R1 b2a07np.r1 19 3.5
C5A03NP.F1 c5a03np.f1 19 3.5
B1C10NP.F1 b1c10np.f1 19 3.5
A6C06NP.R1 a6c06np.r1 19 4.7
B6G04NP.R1 b6g04np.r1 19 4.7
A2A10NP.R1 a2a10np.r1 19 4.7
C4E01NP.R1 c4e01np.r1 19 4.7
C3B07NP.R1 c3b07np.r1 19 4.7
C1B04NP.F1 c1b04np.f1 19 4.7
B3E12NP.R1 b3e12np.r1 19 4.7
A3H01NP.R1 a3h01np.r1 19 4.7
A4B02NP.R1 a4b02np.r1 18 6.5
A9A01NP.F1 a9a01np.f1 18 6.5
A7C09NP.R1 a7c09np.r1 18 6.5
A1A04NP.R1 a1a04np.r1 18 6.5
A8C09NP.R1 a8c09np.r1 18 6.5
C3E06NP.R1 c3e06np.r1 18 6.5
B7E12NP.R1 b7e12np.r1 18 6.5
C5C11NP.R1 c5c11np.r1 18 6.5
A9D06NP.F1 a9d06np.f1 18 6.5
C1H06NP.F1 c1h06np.f1 18 8.9
A6G03NP.F1 a6g03np.f1 18 8.9
B2F08NP.R1 b2f08np.r1 18 8.9
A2H05NP.R1 a2h05np.r1 18 8.9
C1C12NP.R1 c1c12np.r1 18 8.9
B5B09NP.R1 b5b09np.r1 18 8.9
B2A07NP.F1 b2a07np.f1 18 8.9
A8D04NP.R1 a8d04np.r1 18 8.9
B4G03NP.F1 b4g03np.f1 18 8.9
B2A08NP.R1 b2a08np.r1 18 8.9
B1G08NP.R1 b1g08np.r1 18 8.9
>B4C04NP.F1 b4c04np.f1
Length = 430
Score = 19.8 bits (37), Expect(2) = 0.22
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2 / -2
Query: 11 GHCRCEGDIKLILRSYCISY*GTYRIVIIPKI 106
G RC + L + S *G Y ++IP +
Sbjct: 147 GCARCLRGLSFTLVTLKFSG*GVYGYLMIPSL 52
Score = 18.5 bits (34), Expect(2) = 0.22
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2 / -2
Query: 2 VTVGHCR 22
VTV HCR
Sbjct: 204 VTVDHCR 184
>A3F02NP.R1 a3f02np.r1
Length = 263
Score = 23.1 bits (44), Expect = 0.27
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3 / +3
Query: 51 LSINLISPSQRQWP 10
+ I +SPS R WP
Sbjct: 162 VQITFMSPSSRSWP 203
>A9G02NP.R1 a9g02np.r1
Length = 417
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +2
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 206 FWTLSLFCR 232
>A3H07NP.R1 a3h07np.r1
Length = 559
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +2
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 194 FWTLSLFCR 220
>B3H08NP.F1 b3h08np.f1
Length = 542
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / -2
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 511 FWTLSLFCR 485
>A9D08NP.R1 a9d08np.r1
Length = 383
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +1
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 214 FWTLSLFCR 240
>C3B05NP.R1 c3b05np.r1
Length = 511
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +1
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 205 FWTLSLFCR 231
>B5E11NP.R1 b5e11np.r1
Length = 446
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +2
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 290 FWTLSLFCR 316
>B1B07NP.R1 b1b07np.r1
Length = 525
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +3
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 375 FWTLSLFCR 401
>B3B06NP.F1 b3b06np.f1
Length = 519
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / -2
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 512 FWTLSLFCR 486
>B3B06NP.R1 b3b06np.r1
Length = 487
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +2
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 296 FWTLSLFCR 322
>C3A01NP.R1 c3a01np.r1
Length = 504
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +2
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 374 FWTLSLFCR 400
>A2E11NP.R1 a2e11np.r1
Length = 435
Score = 21.7 bits (41), Expect = 0.70
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +1
Query: 104 FWVL*LFCR 78
FW L LFCR
Sbjct: 352 FWTLSLFCR 378
>A9B07NP.R1 a9b07np.r1
Length = 520
Score = 20.3 bits (38), Expect = 1.8
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = -3 / +1
Query: 42 NLISPSQRQWPT 7
++ SPS++Q+PT
Sbjct: 88 SITSPSRQQYPT 123
>B8C11NP.F1 b8c11np.f1
Length = 387
Score = 20.3 bits (38), Expect = 1.8
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +2 / -1
Query: 2 VTVGHCRCEGDI 37
V VG+C C G +
Sbjct: 108 VLVGYCHCYGPL 73
>A6D11NP.F1 a6d11np.f1
Length = 521
Score = 19.8 bits (37), Expect = 2.5
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = +2 / +2
Query: 23 CEGDIKLILRSYCIS 67
CE D +L YCIS
Sbjct: 95 CESDDRLPGIGYCIS 139
>C1F03NP.F1 c1f03np.f1
Length = 539
Score = 19.8 bits (37), Expect = 2.5
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -3 / +1
Query: 21 RQWPTVT 1
R WPTVT
Sbjct: 295 RHWPTVT 315
Score = 18.0 bits (33), Expect = 8.9
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2 / -1
Query: 2 VTVGHCR 22
VTVG CR
Sbjct: 314 VTVGQCR 294
>C4H09NP.R1 c4h09np.r1
Length = 166
Score = 19.8 bits (37), Expect = 2.5
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +2 / -3
Query: 8 VGHCRCEG 31
+G C+CEG
Sbjct: 83 LGFCKCEG 60
>A6B10NP.F1 a6b10np.f1
Length = 304
Score = 19.8 bits (37), Expect = 2.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1 / +2
Query: 67 LLRYLQNSY 93
LLRYLQ +Y
Sbjct: 230 LLRYLQTTY 256
>A1G03NP.R1 a1g03np.r1
Length = 459
Score = 19.8 bits (37), Expect = 2.5
Identities = 5/5 (100%), Positives = 5/5 (100%)
Frame = +2 / +1
Query: 11 GHCRC 25
GHCRC
Sbjct: 280 GHCRC 294
>A1C03NP.R1 a1c03np.r1
Length = 507
Score = 19.8 bits (37), Expect = 2.5
Identities = 5/5 (100%), Positives = 5/5 (100%)
Frame = +2 / +3
Query: 11 GHCRC 25
GHCRC
Sbjct: 279 GHCRC 293
>B3A06NP.R1 b3a06np.r1
Length = 392
Score = 19.8 bits (37), Expect = 2.5
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -3 / +3
Query: 24 QRQWPTV 4
QRQWP V
Sbjct: 180 QRQWPEV 200
>B2A07NP.R1 b2a07np.r1
Length = 524
Score = 19.4 bits (36), Expect = 3.5
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1 / +1
Query: 1 RYGWPLSL* 27
R+ WPL L*
Sbjct: 340 RWAWPLWL* 366
>C5A03NP.F1 c5a03np.f1
Length = 562
Score = 19.4 bits (36), Expect = 3.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3 / -2
Query: 33 SPSQRQWPT 7
SPS WPT
Sbjct: 231 SPSSATWPT 205
>B1C10NP.F1 b1c10np.f1
Length = 486
Score = 19.4 bits (36), Expect = 3.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3 / -1
Query: 33 SPSQRQWPT 7
SPS WPT
Sbjct: 231 SPSSATWPT 205
>A6C06NP.R1 a6c06np.r1
Length = 493
Score = 18.9 bits (35), Expect = 4.7
Identities = 5/7 (71%), Positives = 7/7 (99%)
Frame = -2 / +1
Query: 58 VTPEYQF 38
+TPEYQ+
Sbjct: 214 ITPEYQY 234
>B6G04NP.R1 b6g04np.r1
Length = 475
Score = 18.9 bits (35), Expect = 4.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2 / -3
Query: 79 GTLVANAVTPEYQFDISFTTTMAN 8
GT+ + AVT Y +S T ++ +
Sbjct: 446 GTITSVAVTSMYLVTVS*TVSVTH 375
>A2A10NP.R1 a2a10np.r1
Length = 265
Score = 18.9 bits (35), Expect = 4.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -2 / +1
Query: 97 YYNYSVGT 74
Y+NYSV T
Sbjct: 43 YHNYSVST 66
>C4E01NP.R1 c4e01np.r1
Length = 435
Score = 18.9 bits (35), Expect = 4.7
Identities = 7/17 (41%), Positives = 8/17 (46%)
Frame = -3 / -2
Query: 54 LLSINLISPSQRQWPTV 4
L+ SPS R W V
Sbjct: 239 LIDCGWASPSSRSWSCV 189
>C3B07NP.R1 c3b07np.r1
Length = 536
Score = 18.9 bits (35), Expect = 4.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2 / -3
Query: 79 GTLVANAVTPEYQFDISFTTTMAN 8
GT+ + AVT Y +S T ++ +
Sbjct: 447 GTITSVAVTSMYLVTVS*TVSVTH 376
>C1B04NP.F1 c1b04np.f1
Length = 428
Score = 18.9 bits (35), Expect = 4.7
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1 / +3
Query: 35 YLLHNDNGQP 6
YLL ND+ P
Sbjct: 78 YLLENDHADP 107
>B3E12NP.R1 b3e12np.r1
Length = 463
Score = 18.9 bits (35), Expect = 4.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2 / -3
Query: 79 GTLVANAVTPEYQFDISFTTTMAN 8
GT+ + AVT Y +S T ++ +
Sbjct: 308 GTITSVAVTSMYLVTVS*TVSVTH 237
>A3H01NP.R1 a3h01np.r1
Length = 537
Score = 18.9 bits (35), Expect = 4.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3 / -2
Query: 3 LRLAIVVVKEISN*YSGVTALATK 74
LRL + ++I+ * + V + TK
Sbjct: 383 LRLLLRKTRKIAR*IADVMRIGTK 312
>A4B02NP.R1 a4b02np.r1
Length = 437
Score = 18.5 bits (34), Expect = 6.5
Identities = 4/5 (80%), Positives = 4/5 (80%)
Frame = +2 / -2
Query: 8 VGHCR 22
VGHC
Sbjct: 271 VGHCL 257
>A9A01NP.F1 a9a01np.f1
Length = 449
Score = 18.5 bits (34), Expect = 6.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Frame = -2 / -1
Query: 109 PYFGYYNYSVGTLVANAVTPEYQ 41
P+FG S ++ P YQ
Sbjct: 83 PFFGSLFLSFSSMGCTYT*PIYQ 15
>A7C09NP.R1 a7c09np.r1
Length = 523
Score = 18.5 bits (34), Expect = 6.5
Identities = 4/5 (80%), Positives = 4/5 (80%)
Frame = +2 / -2
Query: 8 VGHCR 22
VGHC
Sbjct: 192 VGHCL 178
>A1A04NP.R1 a1a04np.r1
Length = 584
Score = 18.5 bits (34), Expect = 6.5
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = +2 / -2
Query: 17 CRCE 28
CRCE
Sbjct: 559 CRCE 548
>A8C09NP.R1 a8c09np.r1
Length = 515
Score = 18.5 bits (34), Expect = 6.5
Identities = 4/5 (80%), Positives = 4/5 (80%)
Frame = +2 / -2
Query: 8 VGHCR 22
VGHC
Sbjct: 145 VGHCG 131
>C3E06NP.R1 c3e06np.r1
Length = 463
Score = 18.5 bits (34), Expect = 6.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1 / -3
Query: 1 RYGWPLSL*R 30
R+GWP *R
Sbjct: 461 RHGWPRRR*R 432
>B7E12NP.R1 b7e12np.r1
Length = 223
Score = 18.5 bits (34), Expect = 6.5
Identities = 4/5 (80%), Positives = 4/5 (80%)
Frame = +2 / -1
Query: 8 VGHCR 22
VGHC
Sbjct: 211 VGHCL 197
>C5C11NP.R1 c5c11np.r1
Length = 482
Score = 18.5 bits (34), Expect = 6.5
Identities = 4/5 (80%), Positives = 4/5 (80%)
Frame = +2 / -3
Query: 8 VGHCR 22
VGHC
Sbjct: 117 VGHCG 103
>A9D06NP.F1 a9d06np.f1
Length = 452
Score = 18.5 bits (34), Expect = 6.5
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = -2 / +2
Query: 103 FGYYNYSV 80
FGY NY V
Sbjct: 407 FGYRNYQV 430
>C1H06NP.F1 c1h06np.f1
Length = 475
Score = 18.0 bits (33), Expect = 8.9
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -2 / +2
Query: 58 VTPEYQFDISFTTTMAN 8
+TP + +SF T N
Sbjct: 110 LTPSFSAPVSFAKTAHN 160
>A6G03NP.F1 a6g03np.f1
Length = 479
Score = 18.0 bits (33), Expect = 8.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / +1
Query: 55 LLH*LLRYLQNSYNTQN 105
L+H LLR++ Y Q+
Sbjct: 274 LVHLLLRFVLAVYGNQD 324
>B2F08NP.R1 b2f08np.r1
Length = 515
Score = 18.0 bits (33), Expect = 8.9
Identities = 4/9 (44%), Positives = 7/9 (77%)
Frame = +2 / -2
Query: 14 HCRCEGDIK 40
HCRC +++
Sbjct: 76 HCRCAREME 50
>A2H05NP.R1 a2h05np.r1
Length = 414
Score = 18.0 bits (33), Expect = 8.9
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = -1 / -2
Query: 101 WVL*LFCR 78
W++ LFCR
Sbjct: 302 WLVRLFCR 279
>C1C12NP.R1 c1c12np.r1
Length = 510
Score = 18.0 bits (33), Expect = 8.9
Identities = 7/15 (46%), Positives = 8/15 (52%)
Frame = +2 / -1
Query: 5 TVGHCRCEGDIKLIL 49
T GH +C G L L
Sbjct: 495 TAGHWQCPGRCALRL 451
>B5B09NP.R1 b5b09np.r1
Length = 553
Score = 18.0 bits (33), Expect = 8.9
Identities = 4/11 (36%), Positives = 9/11 (81%)
Frame = -3 / -3
Query: 36 ISPSQRQWPTV 4
+ PS+ +WP++
Sbjct: 158 MEPSELRWPSL 126
>B2A07NP.F1 b2a07np.f1
Length = 455
Score = 18.0 bits (33), Expect = 8.9
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = +2 / +2
Query: 14 HCRC 25
HCRC
Sbjct: 320 HCRC 331
>A8D04NP.R1 a8d04np.r1
Length = 367
Score = 18.0 bits (33), Expect = 8.9
Identities = 5/9 (55%), Positives = 6/9 (66%)
Frame = +2 / +3
Query: 14 HCRCEGDIK 40
H RC G +K
Sbjct: 66 HARCSGRLK 92
>B4G03NP.F1 b4g03np.f1
Length = 567
Score = 18.0 bits (33), Expect = 8.9
Identities = 5/10 (50%), Positives = 7/10 (70%)
Frame = -2 / -2
Query: 106 YFGYYNYSVG 77
Y+GYY + G
Sbjct: 494 YWGYYGAATG 465
>B2A08NP.R1 b2a08np.r1
Length = 505
Score = 18.0 bits (33), Expect = 8.9
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = -3 / -2
Query: 51 LSINLISPSQRQWPTVT 1
L+I SPS W TVT
Sbjct: 84 LAILPSSPSM*VWGTVT 34
>B1G08NP.R1 b1g08np.r1
Length = 376
Score = 18.0 bits (33), Expect = 8.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3 / -1
Query: 54 LLSINLISPSQRQ 16
LLS ++ PSQR+
Sbjct: 352 LLSCIVVRPSQRR 314
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 242070
Number of Sequences: 2682
Number of extensions: 1022
Number of successful extensions: 190
Number of sequences better than 10.0: 53
length of query: 36
length of database: 382,504
effective HSP length: 29
effective length of query: 7
effective length of database: 304,726
effective search space: 2133082
effective search space used: 2133082
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 33 (18.0 bits)