TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1607_H10_P19ZS5.se
q
(338 letters)
Database: /phillip/Ncr/np_est
2682 sequences; 1,147,514 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A1E02NP.F1 a1e02np.f1 26 0.43
A4G02NP.R1 a4g02np.r1 25 0.81
C5C03NP.F1 c5c03np.f1 24 1.1
C4F11NP.R1 c4f11np.r1 24 1.5
A6H07NP.F1 a6h07np.f1 24 2.1
A4A02NP.R1 a4a02np.r1 24 2.1
A1E02NP.R1 a1e02np.r1 24 2.1
A4D10NP.F1 a4d10np.f1 23 2.9
C2F05NP.R1 c2f05np.r1 23 2.9
B1A09NP.R1 b1a09np.r1 23 2.9
A6G05NP.R1 a6g05np.r1 23 2.9
C3B02NP.R1 c3b02np.r1 23 2.9
B5F03NP.R1 b5f03np.r1 22 3.1
C3H01NP.F1 c3h01np.f1 23 4.0
B7E11NP.F1 b7e11np.f1 23 4.0
B4G03NP.R1 b4g03np.r1 23 4.0
B7F12NP.F1 b7f12np.f1 23 4.0
C3C01NP.F1 c3c01np.f1 23 4.0
B1H10NP.R1 b1h10np.r1 23 4.0
A9F07NP.F1 a9f07np.f1 23 4.0
A4D04NP.F1 a4d04np.f1 23 4.0
A9G06NP.F1 a9g06np.f1 23 4.0
A9D12NP.F1 a9d12np.f1 23 4.0
A6E12NP.R1 a6e12np.r1 23 4.0
A5H07NP.R1 a5h07np.r1 23 4.0
A2A11NP.R1 a2a11np.r1 23 4.0
C3D04NP.R1 c3d04np.r1 23 4.0
B6A04NP.F1 b6a04np.f1 23 4.0
B3B07NP.F1 b3b07np.f1 23 4.0
A8B04NP.R1 a8b04np.r1 23 4.0
A7C02NP.R1 a7c02np.r1 23 4.0
B6F01NP.F1 b6f01np.f1 23 4.0
C5H10NP.F1 c5h10np.f1 23 4.0
C4F01NP.F1 c4f01np.f1 23 4.0
A2F02NP.R1 a2f02np.r1 23 4.0
C1D10NP.R1 c1d10np.r1 22 5.5
A6D03NP.R1 a6d03np.r1 22 5.5
C5C10NP.F1 c5c10np.f1 22 5.5
B3C07NP.R1 b3c07np.r1 22 5.5
C1A11NP.F1 c1a11np.f1 22 5.5
A5F04NP.R1 a5f04np.r1 22 5.5
A6G10NP.R1 a6g10np.r1 22 7.5
B3B09NP.R1 b3b09np.r1 22 7.5
A7E12NP.R1 a7e12np.r1 22 7.5
A9G10NP.R1 a9g10np.r1 22 7.5
A5G11NP.F1 a5g11np.f1 22 7.5
C3A05NP.R1 c3a05np.r1 22 7.5
B4F04NP.R1 b4f04np.r1 22 7.5
A5G10NP.R1 a5g10np.r1 22 7.5
A1F04NP.R1 a1f04np.r1 22 7.5
>A1E02NP.F1 a1e02np.f1
Length = 530
Score = 25.8 bits (50), Expect = 0.43
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1 / -1
Query: 128 SSSGGECCHCQSTDVHIRVLKNSQEHR 48
SSSG E + D+HIR L S HR
Sbjct: 104 SSSGKEARAEERRDIHIRELSYSVIHR 24
>A4G02NP.R1 a4g02np.r1
Length = 516
Score = 24.9 bits (48), Expect = 0.81
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -3 / -2
Query: 297 EHTTSHMRSF 268
EHT+SH+RSF
Sbjct: 509 EHTSSHLRSF 480
>C5C03NP.F1 c5c03np.f1
Length = 558
Score = 24.4 bits (47), Expect = 1.1
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1 / +3
Query: 259 WRSERAHMRRCMLSWR 306
WR R H RR WR
Sbjct: 336 WRPRRTHGRRSRYHWR 383
>C4F11NP.R1 c4f11np.r1
Length = 457
Score = 24.0 bits (46), Expect = 1.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / -3
Query: 251 RRPGGPKERI 280
RRPGGP+ R+
Sbjct: 332 RRPGGPRRRV 303
>A6H07NP.F1 a6h07np.f1
Length = 458
Score = 23.5 bits (45), Expect = 2.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1 / -3
Query: 128 SSSGGECCHCQS 93
S G CC+CQ+
Sbjct: 408 SEEAGRCCYCQA 373
>A4A02NP.R1 a4a02np.r1
Length = 469
Score = 23.5 bits (45), Expect = 2.1
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = +1 / +1
Query: 259 WRSERAHMRRCMLSWRL 309
WRS R + RRC RL
Sbjct: 103 WRSSRRYPRRCCSRRRL 153
>A1E02NP.R1 a1e02np.r1
Length = 486
Score = 23.5 bits (45), Expect = 2.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +3
Query: 226 WDLSSIPLTTAW 261
W LSS P+T W
Sbjct: 183 WTLSSTPVTVTW 218
>A4D10NP.F1 a4d10np.f1
Length = 458
Score = 23.1 bits (44), Expect = 2.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1 / +3
Query: 143 HIRLRSSSGGECCH 102
H+R+R SS CC+
Sbjct: 108 HVRIRGSSLPPCCY 149
>C2F05NP.R1 c2f05np.r1
Length = 397
Score = 23.1 bits (44), Expect = 2.9
Identities = 7/15 (46%), Positives = 9/15 (59%)
Frame = +2 / +2
Query: 80 YGHPSIGNDNTHHRC 124
Y HP+ G +HH C
Sbjct: 122 YIHPNTGRTISHHGC 166
>B1A09NP.R1 b1a09np.r1
Length = 493
Score = 23.1 bits (44), Expect = 2.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2 / +2
Query: 292 YNVSYALFRTSRPSSTVCLKGPIMTSLTSSFLITD 188
Y VS+ ++ S PSS + I+T S LIT+
Sbjct: 14 Y*VSFK*YKPSLPSSVLV*L*SIITKSLDSLLITN 118
>A6G05NP.R1 a6g05np.r1
Length = 477
Score = 23.1 bits (44), Expect = 2.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2 / -1
Query: 20 GCYAPRCTH 46
GC APRC H
Sbjct: 75 GCRAPRCGH 49
>C3B02NP.R1 c3b02np.r1
Length = 474
Score = 23.1 bits (44), Expect = 2.9
Identities = 8/30 (26%), Positives = 10/30 (32%)
Frame = +2 / +2
Query: 26 YAPRCTHFDAPDYSSGLGYGHPSIGNDNTH 115
+ P T D+ GY HP H
Sbjct: 62 HTPHTTQQQTTDHEPSGGYLHPRPAGCRQH 151
>B5F03NP.R1 b5f03np.r1
Length = 443
Score = 21.7 bits (41), Expect(2) = 3.1
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -3 / +3
Query: 108 LSLPIDGCPYPSP 70
L P CPYP P
Sbjct: 216 LPSPTPTCPYPGP 254
Score = 19.4 bits (36), Expect(2) = 3.1
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -3 / +1
Query: 24 HPVLH 10
HP+LH
Sbjct: 286 HPLLH 300
>C3H01NP.F1 c3h01np.f1
Length = 490
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -3
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 125 GILDAQHHRYFYLLVLSFRI 66
>B7E11NP.F1 b7e11np.f1
Length = 397
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2 / -1
Query: 188 VGYQEGTCERS 220
VGY++ T ER
Sbjct: 46 VGYEDNTTERK 14
>B4G03NP.R1 b4g03np.r1
Length = 565
Score = 22.6 bits (43), Expect = 4.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -1 / -1
Query: 128 SSSGGECCHCQSTDVHIRV 72
S CCH Q HIR+
Sbjct: 283 SGCRSRCCHSQLPSWHIRL 227
>B7F12NP.F1 b7f12np.f1
Length = 422
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -3
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 129 GILDAQHHRYFYLLVLSFRI 70
>C3C01NP.F1 c3c01np.f1
Length = 446
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -1
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 98 GILDAQHHRYFYLLVLSFRI 39
>B1H10NP.R1 b1h10np.r1
Length = 395
Score = 22.6 bits (43), Expect = 4.0
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = -1 / -3
Query: 284 LICALSDLQAVVNGM 240
L C LS L V+ GM
Sbjct: 330 LACCLSSLSLVLTGM 286
>A9F07NP.F1 a9f07np.f1
Length = 419
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -1
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 95 GILDAQHHRYFYLLVLSFRI 36
>A4D04NP.F1 a4d04np.f1
Length = 437
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -3
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 114 GILDAQHHRYFYLLVLSFRI 55
>A9G06NP.F1 a9g06np.f1
Length = 488
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -1
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 125 GILDAQHHRYFYLLVLSFRI 66
>A9D12NP.F1 a9d12np.f1
Length = 488
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -1
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 125 GILDAQHHRYFYLLVLSFRI 66
>A6E12NP.R1 a6e12np.r1
Length = 467
Score = 22.6 bits (43), Expect = 4.0
Identities = 10/23 (43%), Positives = 12/23 (51%)
Frame = +3 / +2
Query: 216 EVMMGPFKHTVDDGLEVRKSAYE 284
EV +GP T DDG + S E
Sbjct: 284 EVSVGPHPETDDDGEDFESSEDE 352
>A5H07NP.R1 a5h07np.r1
Length = 400
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1 / +2
Query: 259 WRSERAHMRR 288
WRS R + RR
Sbjct: 308 WRSSRRYPRR 337
>A2A11NP.R1 a2a11np.r1
Length = 467
Score = 22.6 bits (43), Expect = 4.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = -1 / +2
Query: 104 HCQSTDVHIRVLKNSQEHRNEYISEHSIQY 15
HC+ + I E R+ Y HS +Y
Sbjct: 125 HCELSSSPISNPDGFDELRDSYSHSHSQRY 214
>C3D04NP.R1 c3d04np.r1
Length = 448
Score = 22.6 bits (43), Expect = 4.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3 / -2
Query: 99 PIDGCPYPSPEE*SGA 52
P GCPYP+ S A
Sbjct: 243 PNSGCPYPNNSNPSSA 196
>B6A04NP.F1 b6a04np.f1
Length = 259
Score = 22.6 bits (43), Expect = 4.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3 / +3
Query: 312 KQSP*EHTTSHMRSFGPPGRR 250
+ P H +H R F PGR+
Sbjct: 117 RHCPFHHFPNHQREFKCPGRQ 179
>B3B07NP.F1 b3b07np.f1
Length = 480
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -2
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 119 GILDAQHHRYFYLLVLSFRI 60
>A8B04NP.R1 a8b04np.r1
Length = 495
Score = 22.6 bits (43), Expect = 4.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3 / +3
Query: 303 P*EHTTSHMRSFGPPGR 253
P* HT ++ F PP R
Sbjct: 180 P*HHTAKALQPFDPPRR 230
>A7C02NP.R1 a7c02np.r1
Length = 537
Score = 22.6 bits (43), Expect = 4.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1 / -2
Query: 82 WTSVDWQ*Q 108
WT DWQ*Q
Sbjct: 305 WTMTDWQ*Q 279
>B6F01NP.F1 b6f01np.f1
Length = 430
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1 / -3
Query: 245 GMLERSHHDFSHKFLLDNRL 186
G+L+ HH + + +L R+
Sbjct: 125 GILDAQHHRYFYLLVLSFRI 66
>C5H10NP.F1 c5h10np.f1
Length = 474
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2 / -1
Query: 188 VGYQEGTCERS 220
VGY++ T ER
Sbjct: 42 VGYEDNTTERK 10
>C4F01NP.F1 c4f01np.f1
Length = 464
Score = 22.6 bits (43), Expect = 4.0
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -3 / +2
Query: 90 GCPYPSP 70
GCPYP P
Sbjct: 410 GCPYPGP 430
>A2F02NP.R1 a2f02np.r1
Length = 472
Score = 22.6 bits (43), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (53%)
Frame = -3 / +1
Query: 138 QASFEQRW*VLSLPIDGCPYPS 73
Q +Q+W* S+P P PS
Sbjct: 169 QQQQQQQW*STSVPPATPPSPS 234
>C1D10NP.R1 c1d10np.r1
Length = 514
Score = 22.1 bits (42), Expect = 5.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2 / -1
Query: 298 RAYNVSYALFRTSRPSSTVCLKGPIMTSLT 209
RAY V A+ + PSS + P MT LT
Sbjct: 433 RAYLVLEAMNSSDSPSSLRRSEWPRMTHLT 344
>A6D03NP.R1 a6d03np.r1
Length = 494
Score = 22.1 bits (42), Expect = 5.5
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = -3 / -2
Query: 99 PIDGCPYPSPEE*SGAS 49
P G P PSP+E S AS
Sbjct: 469 PWRGPPVPSPQEQSQAS 419
>C5C10NP.F1 c5c10np.f1
Length = 432
Score = 22.1 bits (42), Expect = 5.5
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / -1
Query: 7 VMKYWMLCSEMY 42
V +YW +CS +Y
Sbjct: 219 VAEYWKICSLLY 184
>B3C07NP.R1 b3c07np.r1
Length = 581
Score = 22.1 bits (42), Expect = 5.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Frame = -1 / +3
Query: 263 LQAVVNGMLERSHHDFSH 210
+ ++NG+L HH H
Sbjct: 237 MSKLLNGLLREQHHQNQH 290
>C1A11NP.F1 c1a11np.f1
Length = 463
Score = 22.1 bits (42), Expect = 5.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2 / +3
Query: 86 HPSIGNDNTHHR 121
HPS G +N H R
Sbjct: 375 HPSTGGNNRHSR 410
>A5F04NP.R1 a5f04np.r1
Length = 361
Score = 22.1 bits (42), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1 / -1
Query: 289 CMLSWRLLLVALTTST 336
C+++W LLL A T S+
Sbjct: 253 CLMAWFLLLAA*TGSS 206
>A6G10NP.R1 a6g10np.r1
Length = 335
Score = 21.7 bits (41), Expect = 7.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2 / +3
Query: 262 SRPSSTVCLKGPIMTSLTSS 203
+R T L GP+ +SLT+S
Sbjct: 189 TRRRCTSALTGPLRSSLTTS 248
>B3B09NP.R1 b3b09np.r1
Length = 487
Score = 21.7 bits (41), Expect = 7.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1 / +2
Query: 131 RSSSGGECCHCQSTDVHIRV 72
R SG C C ++VH +V
Sbjct: 134 RPPSGAPICSCVFSEVHDQV 193
>A7E12NP.R1 a7e12np.r1
Length = 421
Score = 21.7 bits (41), Expect = 7.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2 / +1
Query: 20 GCYAPRCTHF 49
GC PRC H+
Sbjct: 214 GCRRPRCRHW 243
>A9G10NP.R1 a9g10np.r1
Length = 446
Score = 21.7 bits (41), Expect = 7.5
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -2 / -2
Query: 259 RPSSTVCLKG 230
RPSS++C+ G
Sbjct: 169 RPSSSICMSG 140
>A5G11NP.F1 a5g11np.f1
Length = 392
Score = 21.7 bits (41), Expect = 7.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2 / -1
Query: 188 VGYQEGTCERS 220
VGY++ T ER
Sbjct: 41 VGYEDNTPERK 9
>C3A05NP.R1 c3a05np.r1
Length = 480
Score = 21.7 bits (41), Expect = 7.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3 / +1
Query: 267 GPPGRRQ 247
GPPGRRQ
Sbjct: 172 GPPGRRQ 192
>B4F04NP.R1 b4f04np.r1
Length = 539
Score = 21.7 bits (41), Expect = 7.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1 / -3
Query: 52 CS*LFFRTRIWTSVDWQ*Q 108
C L+ IW S+DW *+
Sbjct: 171 CLFLYQVVGIWVSMDWY*E 115
>A5G10NP.R1 a5g10np.r1
Length = 479
Score = 21.7 bits (41), Expect = 7.5
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2 / -2
Query: 107 NTHHRCSNEA*YDPSS 154
N H RC * DP S
Sbjct: 124 NAHRRCLRRL*QDPPS 77
>A1F04NP.R1 a1f04np.r1
Length = 576
Score = 21.7 bits (41), Expect = 7.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2 / +2
Query: 233 FQAYR*RRPGGPKER 277
F R +RPG PK+R
Sbjct: 209 FSERRLQRPGSPKKR 253
Database: /phillip/Ncr/np_est
Posted date: Jan 27, 2002 3:48 PM
Number of letters in database: 1,147,514
Number of sequences in database: 2682
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1068068
Number of Sequences: 2682
Number of extensions: 17222
Number of successful extensions: 643
Number of sequences better than 10.0: 52
length of query: 112
length of database: 382,504
effective HSP length: 34
effective length of query: 78
effective length of database: 291,316
effective search space: 22722648
effective search space used: 22722648
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 40 (21.2 bits)