BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrP/stackpack/blast_NcrP/FgrP_1608_A11_B22ZS5.se
q
         (418 letters)

Database: /phillip/Ncr/np_est
           2682 sequences; 1,147,514 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

B4H08NP.R1 b4h08np.r1                                                  30  0.36
B1E10NP.R1 b1e10np.r1                                                  30  0.36
C4C01NP.R1 c4c01np.r1                                                  28  1.4
C5A12NP.R1 c5a12np.r1                                                  26  5.6
C4B04NP.F1 c4b04np.f1                                                  26  5.6
B8F07NP.F1 b8f07np.f1                                                  26  5.6
B8C07NP.R1 b8c07np.r1                                                  26  5.6
B2A08NP.R1 b2a08np.r1                                                  26  5.6
B1H08NP.F1 b1h08np.f1                                                  26  5.6
B1B09NP.F1 b1b09np.f1                                                  26  5.6
A9H12NP.F1 a9h12np.f1                                                  26  5.6
A8A02NP.R1 a8a02np.r1                                                  26  5.6
A2F04NP.F1 a2f04np.f1                                                  26  5.6
A1D12NP.R1 a1d12np.r1                                                  26  5.6

>B4H08NP.R1 b4h08np.r1
          Length = 458

 Score = 30.2 bits (15), Expect = 0.36
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 37  cgtctcccaaatcat 51
           |||||||||||||||
Sbjct: 386 cgtctcccaaatcat 400



>B1E10NP.R1 b1e10np.r1
          Length = 516

 Score = 30.2 bits (15), Expect = 0.36
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 369 tgaaattggaattga 383
           |||||||||||||||
Sbjct: 123 tgaaattggaattga 109



>C4C01NP.R1 c4c01np.r1
          Length = 426

 Score = 28.2 bits (14), Expect = 1.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 177 atctcgacgcggcg 190
           ||||||||||||||
Sbjct: 405 atctcgacgcggcg 392



>C5A12NP.R1 c5a12np.r1
          Length = 360

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 20  gactttggcgagc 32
           |||||||||||||
Sbjct: 309 gactttggcgagc 321



>C4B04NP.F1 c4b04np.f1
          Length = 436

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 368 ttgaaattggaat 380
           |||||||||||||
Sbjct: 221 ttgaaattggaat 233



>B8F07NP.F1 b8f07np.f1
          Length = 237

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 220 gaggggcatattt 232
           |||||||||||||
Sbjct: 4   gaggggcatattt 16



>B8C07NP.R1 b8c07np.r1
          Length = 408

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 128 gttccatctacca 140
           |||||||||||||
Sbjct: 396 gttccatctacca 408



>B2A08NP.R1 b2a08np.r1
          Length = 505

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                            
Query: 6   tctccctcgatgaggac 22
           ||||| |||||||||||
Sbjct: 339 tctccatcgatgaggac 355



>B1H08NP.F1 b1h08np.f1
          Length = 350

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 220 gaggggcatattt 232
           |||||||||||||
Sbjct: 8   gaggggcatattt 20



>B1B09NP.F1 b1b09np.f1
          Length = 445

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 220 gaggggcatattt 232
           |||||||||||||
Sbjct: 8   gaggggcatattt 20



>A9H12NP.F1 a9h12np.f1
          Length = 444

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 383 ataaccctcgttg 395
           |||||||||||||
Sbjct: 18  ataaccctcgttg 6



>A8A02NP.R1 a8a02np.r1
          Length = 443

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 172 tgagcatctcgac 184
           |||||||||||||
Sbjct: 338 tgagcatctcgac 326



>A2F04NP.F1 a2f04np.f1
          Length = 404

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 220 gaggggcatattt 232
           |||||||||||||
Sbjct: 8   gaggggcatattt 20



>A1D12NP.R1 a1d12np.r1
          Length = 531

 Score = 26.3 bits (13), Expect = 5.6
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 231 ttcttgcctgcat 243
           |||||||||||||
Sbjct: 483 ttcttgcctgcat 471



  Database: /phillip/Ncr/np_est
    Posted date:  Jan 27, 2002  3:48 PM
  Number of letters in database: 1,147,514
  Number of sequences in database:  2682
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 239
Number of Sequences: 2682
Number of extensions: 239
Number of successful extensions: 44
Number of sequences better than 10.0: 14
length of query: 418
length of database: 1,147,514
effective HSP length: 14
effective length of query: 404
effective length of database: 1,109,966
effective search space: 448426264
effective search space used: 448426264
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)