The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_1_A02_T7.seq Fgr-S_1_A02_T7 0 0 0 1 126
(126 letters)
Database: nr
719,861 sequences; 228,039,490 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB30295.1| (AK016546) putative [Mus musculus] 29 8.9
>dbj|BAB30295.1| (AK016546) putative [Mus musculus]
Length = 883
Score = 29.3 bits (64), Expect = 8.9
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +1
Query: 25 NMETKPRGDGVALFRSHWELNLYAS----PTAEPTPAG 126
NME PR GVA F E + Y+ P AE TP+G
Sbjct: 243 NMEEDPRSAGVATFVLQEEFDRYSGYWWCPQAERTPSG 280
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,633,452
Number of Sequences: 719861
Number of extensions: 834598
Number of successful extensions: 395136993095
Number of sequences better than 10.0: 268722306
Number of HSP's better than 10.0 without gapping: 1850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 228,039,490
effective HSP length: 17
effective length of database: 215,801,853
effective search space used: 5179244472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)