Score E
Sequences producing significant alignments: (bits) Value
ref|NP_067631.1| RNA binding motif protein 8B [Homo sapiens... 67 3e-11
ref|XP_034627.1| 33716 [Homo sapiens] >gi|14744480|ref|XP_0... 67 3e-11
ref|NP_080151.1| RNA binding motif protein [Mus musculus] >... 67 3e-11
ref|NP_005096.1| RNA binding motif protein 8A; RNA binding ... 67 3e-11
ref|XP_002094.3| RNA binding motif protein 8A [Homo sapiens] 67 3e-11
gb|AAG27092.1|AF299119_1 (AF299119) RNA-binding protein Y14... 65 2e-10
gb|AAG52616.1|AC024261_3 (AC024261) RNA-binding protein, pu... 65 2e-10
gb|AAF58987.1| (AE003834) CG8781 gene product [Drosophila m... 55 2e-07
pir||S43599 Snf5 homolog R07E5.3 - Caenorhabditis elegans 49 9e-06
emb|CAA83626.1| (Z32683) contains similarity to Pfam domain... 49 9e-06
pir||T38229 probable ribonucleoprotein - fission yeast (Sc... 47 4e-05
dbj|BAB16700.1| (AB041639) TIA-1 like protein [Bombyx mori] 45 1e-04
dbj|BAA32663.1| (AB017339) similar to TIA-1 [Bombyx mori] 45 1e-04
gb|AAK21429.1| (U00052) contains similarity to Pfam domain ... 43 9e-04
pir||T16535 hypothetical protein K02F3.11 - Caenorhabditis ... 43 9e-04
sp|Q09442|YP85_CAEEL HYPOTHETICAL 40.9 KDA PROTEIN C08B11.5... 42 0.002
emb|CAB60993.1| (Z46676) contains similarity to Pfam domain... 42 0.002
gb|AAC47514.1| (U24189) RRM-type RNA binding protein [Caeno... 42 0.002
pir||JC5437 spliceosome-associated protein 49 - Caenorhabdi... 42 0.002
ref|NP_005841.1| splicing factor 3b, subunit 4, 49kD; splic... 42 0.002
pir||T38618 probable splicosome associated proteinRNA bindi... 41 0.003
emb|CAB60356.1| (AL110485) contains similarity to Pfam doma... 40 0.004
gb|AAK20026.1|AF234184_1 (AF234184) sex-lethal protein SXL2... 39 0.010
sp|O97018|SXL_CHRRU SEX-LETHAL PROTEIN HOMOLOG 39 0.010
gb|AAK20025.1|AF234183_1 (AF234183) sex-lethal protein SXL1... 39 0.010
pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis e... 39 0.013
gb|AAK68192.1|U28944_6 (U28944) Hypothetical protein C18A3.... 39 0.013
gb|AAK68191.1|U28944_5 (U28944) Hypothetical protein C18A3.... 39 0.013
emb|CAC18197.1| (AL451015) probable spliceosome-associated ... 39 0.013
gb|AAF50933.1| (AE003573) CG9561 gene product [Drosophila m... 39 0.017
gb|AAC38968.1| (AF026145) sex-lethal homolog CcSXL [Ceratit... 39 0.017
gb|AAD23688.1|AC006841_21 (AC006841) hypothetical protein [... 39 0.017
sp|O61374|SXL_CERCA SEX-LETHAL PROTEIN HOMOLOG (CCSXL) 39 0.017
ref|XP_031044.1| similar to SPLICEOSOME ASSOCIATED PROTEIN ... 38 0.022
emb|CAA65831.1| (X97197) spliceosomal protein [Drosophila m... 38 0.029
gb|AAF46136.1| (AE003437) Spx gene product [Drosophila mela... 38 0.029
gb|AAK48899.1|AF357912_1 (AF357912) ribonucleoprotein [Labe... 38 0.029
gb|AAB81985.1| (AF025689) Sex-lethal protein [Musca domestica] 37 0.037
sp|O17310|SXL_MUSDO SEX-LETHAL PROTEIN HOMOLOG >gi|2565364|... 37 0.037
dbj|BAB02974.1| (AP000600) RNA binding protein nucleolysin;... 37 0.049
gb|AAA02808.1| (L01797) RNA-binding protein [Saccharomyces ... 37 0.064
sp|Q60900|ELV3_MOUSE ELAV-LIKE PROTEIN 3 (HU-ANTIGEN C) (HU... 37 0.064
pir||JC2116 hippocampal 38K autoantigen protein - human >gi... 37 0.064
dbj|BAB02219.1| (AP001303) contains similarity to nucleolin... 37 0.064
ref|NP_014382.1| poly(A)+ RNA-binding protein; Pub1p [Sacch... 37 0.064
ref|XP_032784.1| Hu antigen C [Homo sapiens] 37 0.064
sp|P32588|PUB1_YEAST NUCLEAR AND CYTOPLASMIC POLYADENYLATED... 37 0.064
pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Bin... 37 0.064
sp|Q14576|ELV3_HUMAN ELAV-LIKE PROTEIN 3 (HU-ANTIGEN C) (HU... 37 0.064
ref|XP_012805.3| Hu antigen C [Homo sapiens] >gi|14280337|g... 37 0.064
ref|XP_032785.1| Hu antigen C [Homo sapiens] 37 0.064
gb|AAD00327.1| (U79565) RBM1 [Macropus eugenii] 36 0.083
ref|NP_034618.1| HU-antigen D [Mus musculus] >gi|2801552|gb... 36 0.083
emb|CAC42819.1| (AJ299082) Poly(A)-binding protein [Macaca ... 36 0.083
emb|CAC01696.1| (AJ245662) sex-lethal homologue [Megaselia ... 36 0.083
ref|XP_005409.2| ELAV (embryonic lethal, abnormal vision, D... 36 0.083
pir||I39077 RNA-binding protein Hel-N2 - human >gi|905387|g... 36 0.083
ref|XP_027588.1| ELAV (embryonic lethal, abnormal vision, D... 36 0.083
pir||I50513 ribonucleoprotein - zebra fish >gi|608549|gb|AA... 36 0.083
ref|NP_068771.1| ELAV (embryonic lethal, abnormal vision, D... 36 0.083
ref|XP_017931.1| 61842 [Homo sapiens] 36 0.083
ref|XP_035852.1| ELAV (embryonic lethal, abnormal vision, D... 36 0.083
ref|NP_004423.1| ELAV (embryonic lethal, abnormal vision, D... 36 0.083
ref|XP_027586.1| ELAV (embryonic lethal, abnormal vision, D... 36 0.083
ref|XP_027587.1| ELAV (embryonic lethal, abnormal vision, D... 36 0.083
ref|XP_018255.2| ELAV (embryonic lethal, abnormal vision, D... 36 0.083
pir||I51678 ribonucleoprotein - African clawed frog >gi|608... 36 0.083
gb|AAD50508.1|AF176675_1 (AF176675) RNA-binding protein HuD... 36 0.083
dbj|BAB29173.1| (AK014133) putative [Mus musculus] 36 0.083
sp|Q61701|ELV4_MOUSE ELAV-LIKE PROTEIN 4 (PARANEOPLASTIC EN... 36 0.083
sp|O09032|ELV4_RAT ELAV-LIKE PROTEIN 4 (PARANEOPLASTIC ENCE... 36 0.083
emb|CAB61831.1| (X98771) Sex-lethal orthologous protein [Me... 36 0.083
ref|NP_034616.1| HU-antigen; HU-antigen B [Mus musculus] >g... 36 0.083
dbj|BAB03001.1| (AP001297) glycine-rich RNA binding protein... 36 0.083
sp|O01671|SXL_MEGSC SEX-LETHAL PROTEIN HOMOLOG 36 0.083
emb|CAA04179.2| (AJ000546) Sex-lethal orthologous protein [... 36 0.083
emb|CAB61832.1| (X98769) Sex-lethal orthologous protein [Me... 36 0.083
pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich El... 36 0.083
emb|CAC42817.1| (AJ299078) Poly(A)-binding protein [Gorilla... 36 0.11
ref|NP_011471.1| component of the cleavage and polyadenylat... 36 0.11
emb|CAC42812.1| (AJ299083) Poly(A)-binding protein [Callith... 36 0.11
pir||I51676 ribonucleoprotein - African clawed frog >gi|608... 36 0.11
pir||T34543 hypothetical protein DKFZp434O1221.1 - human (f... 36 0.11
pir||A27441 nucleolin - Chinese hamster 36 0.11
ref|NP_036881.1| nucleolin [Rattus norvegicus] >gi|128844|s... 36 0.11
gb|AAD25780.1|AC006577_16 (AC006577) Similar to gb|U55861 R... 36 0.11
ref|XP_008947.2| ELAV (embryonic lethal, abnormal vision, D... 36 0.11
gb|AAD50313.1|AF176673_1 (AF176673) RNA-binding protein HuA... 36 0.11
ref|NP_001410.1| ELAV (embryonic lethal, abnormal vision, D... 36 0.11
sp|P08199|NUCL_MESAU NUCLEOLIN (PROTEIN C23) 36 0.11
pir||JH0148 nucleolin - rat 36 0.11
gb|AAA36966.1| (M15825) nucleolin, C23 [Cricetulus griseus] 36 0.11
gb|AAD00328.1| (U79567) RBM1 [Sminthopsis macroura] 36 0.11
emb|CAB53185.1| (AJ238969) cap binding protein 20 [Drosophi... 36 0.11
emb|CAA59430.1| (X85111) Xel-1 [Xenopus laevis] 35 0.14
gb|AAF56224.1| (AE003746) Rox8 gene product [alt 1] [Drosop... 35 0.14
pir||T31517 hypothetical protein Y116A8C.34 - Caenorhabditi... 35 0.14
gb|AAF47253.1| (AE003464) CG4806 gene product [Drosophila m... 35 0.14
ref|NP_034615.1| HU-antigen A [Mus musculus] >gi|13124196|s... 35 0.14
gb|AAB36515.1| (U62018) zHuC [Danio rerio] 35 0.14
gb|AAK29408.1|AF338225_1 (AF338225) embryonic poly(A) bindi... 35 0.14
pir||T22767 hypothetical protein F56A8.6 - Caenorhabditis e... 35 0.14
pir||I51677 ribonucleoprotein - African clawed frog >gi|608... 35 0.14
pir||S41644 polyadenylate-binding protein - fruit fly (Dros... 35 0.14
pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 An... 35 0.14
pir||S41766 heterogeneous nuclear ribonucleoprotein G - human 35 0.19
pir||S43202 hnRNP G protein - human 35 0.19
ref|NP_001411.1| Hu antigen C [Homo sapiens] >gi|431093|gb|... 35 0.19
ref|NP_002130.1| RNA binding motif protein, X chromosome [H... 35 0.19
pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX >gi|49298... 35 0.19
emb|CAC01929.1| (AJ293728) translation initiation factor 3,... 35 0.19
ref|XP_016562.1| RNA binding motif protein, X chromosome [H... 35 0.19
ref|NP_035382.1| RNA binding motif protein, X chromosome [M... 35 0.19
gb|AAG53636.1|AF291712_1 (AF291712) initiation factor 3g [A... 35 0.19
ref|XP_033820.1| similar to RNA binding motif protein, Y ch... 35 0.19
emb|CAA53660.1| (X76060) YRRM2 [Homo sapiens] 35 0.19
emb|CAB51361.1| (AJ237846) heterogeneous nuclear ribonucleo... 35 0.19
pir||S32644 nucleolin - African clawed frog >gi|295899|emb|... 35 0.19
pdb|2SXL| Sex-Lethal Rbd1, Nmr, Minimized Average Structure 35 0.19
gb|AAK67714.1| (AY036909) HUC [Homo sapiens] 35 0.19
emb|CAA67016.1| (X98370) sex-lethal [Drosophila subobscura] 35 0.24
gb|AAF51178.1| (AE003581) Rbp9 gene product [alt 2] [Drosop... 35 0.24
gb|AAK30205.1|AF349964_1 (AF349964) poly(A)-binding protein... 35 0.24
gb|AAF51177.1| (AE003581) Rbp9 gene product [alt 1] [Drosop... 35 0.24
gb|AAC13646.1| (L04930) RNA-binding protein [Drosophila mel... 35 0.24
gb|AAD50314.1|AF176674_1 (AF176674) RNA-binding protein HuC... 35 0.24
pir||T19033 hypothetical protein C07A4.1 - Caenorhabditis e... 35 0.24
emb|CAB75429.1| (AJ272011) oligouridylate binding protein [... 35 0.24
sp|P19339|SXL_DROME SEX-LETHAL PROTEIN >gi|85146|pir||B3163... 35 0.24
sp|Q24668|SXL_DROSU SEX-LETHAL PROTEIN 35 0.24
gb|AAF67755.1|AF255335_1 (AF255335) poly(A)-binding protein... 35 0.24
pir||B39725 sex-lethal sex determination protein MS11 - fru... 35 0.24
gb|AAF46241.2| (AE003439) Sxl gene product [alt 3] [Drosoph... 35 0.24
pir||T21822 hypothetical protein F35H8.5 - Caenorhabditis e... 35 0.24
gb|AAB25519.2| (S55886) RRM9 [Drosophila melanogaster] 35 0.24
gb|AAC13645.1| (L04930) RNA-binding protein [Drosophila mel... 35 0.24
ref|XP_010368.5| similar to HETEROGENEOUS NUCLEAR RIBONUCLE... 35 0.24
dbj|BAB09686.1| (AP002544) contains similarity to RNA-bindi... 35 0.24
emb|CAA19655.1| (AL023893) /prediction=(method:''genefinder... 34 0.32
ref|NP_072143.1| nucleolin-related protein NRP (NRP) [Rattu... 34 0.32
ref|XP_048740.1| 41052 [Homo sapiens] >gi|12803083|gb|AAH02... 34 0.32
ref|XP_048739.1| 41060 [Homo sapiens] 34 0.32
ref|NP_071320.1| TIA1 protein, isoform 1; cytotoxic granule... 34 0.32
ref|XP_016463.1| TIA1 protein [Homo sapiens] >gi|14738028|r... 34 0.32
gb|AAC32113.1| (AF051208) putative RNA-binding protein [Pic... 34 0.32
ref|XP_048741.1| 41062 [Homo sapiens] 34 0.32
pir||I51675 ribonucleoprotein - African clawed frog >gi|608... 34 0.32
ref|XP_010858.2| nucleolin [Homo sapiens] >gi|14732708|ref|... 34 0.32
ref|NP_112539.1| cleavage stimulation factor, 3' pre-RNA su... 34 0.32
ref|NP_056050.1| likely ortholog of mouse variant polyadeny... 34 0.32
ref|NP_035715.1| cytotoxic granule-associated RNA-binding p... 34 0.32
ref|NP_071505.1| TIA1 protein, isoform 2; cytotoxic granule... 34 0.32
ref|XP_016462.1| TIA1 protein, isoform 2 [Homo sapiens] 34 0.32
sp|P31483|TIA1_HUMAN NUCLEOLYSIN TIA-1 (RNA-BINDING PROTEIN... 34 0.32
ref|NP_005372.1| nucleolin [Homo sapiens] >gi|128841|sp|P19... 34 0.32
pir||T09704 probable arginine/serine-rich splicing factor -... 34 0.32
gb|AAF66823.1|AF190655_1 (AF190655) poly(A)-binding protein... 34 0.41
gb|AAK43947.1|AF370132_1 (AF370132) unknown protein [Arabid... 34 0.41
gb|AAF25188.1|AF184245_1 (AF184245) ribonucleoprotein [Dani... 34 0.41
dbj|BAA97393.1| (AB023044) contains similarity to transcrip... 34 0.41
gb|AAF54396.1| (AE003683) CG16788 gene product [Drosophila ... 34 0.41
sp|P42731|PAB2_ARATH POLYADENYLATE-BINDING PROTEIN 2 (POLY(... 34 0.41
ref|NP_035010.1| nucleolin [Mus musculus] >gi|128843|sp|P09... 34 0.41
gb|AAH05460.1|AAH05460 (BC005460) nucleolin [Mus musculus] 34 0.41
gb|AAA36961.1| (M13757) nucleolin [Cricetus cricetus] 33 0.54
pir||S18883 ribonucleoprotein precursor - common tobacco (f... 33 0.54
gb|AAF25187.1|AF184244_1 (AF184244) ribonucleoprotein [Dani... 33 0.54
pir||S77714 RNA-binding protein precursor, 33K - wood tobac... 33 0.54
emb|CAB96000.1| (AL360054) Protein with 3 RNA binding domai... 33 0.54
sp|P19684|ROC5_NICSY 33 KDA RIBONUCLEOPROTEIN, CHLOROPLAST ... 33 0.54
pir||T09648 nucleolin homolog nuM1 - alfalfa >gi|1279563|em... 33 0.54
ref|NP_080710.1| RIKEN cDNA 2010004P11 gene [Mus musculus] ... 33 0.70
ref|XP_044886.1| similar to RIKEN cDNA 2010004P11 gene (M. ... 33 0.70
pir||D69805 iron(III) dicitrate transport permease homolog ... 33 0.70
emb|CAC03600.1| (AJ293796) splicing factor SC35 [Arabidopsi... 33 0.70
dbj|BAB09851.1| (AB008268) contains similarity to splicing ... 33 0.70
gb|AAG36874.1|AF242767_1 (AF242767) SF2 [Caenorhabditis ele... 33 0.70
emb|CAC01237.1| (AJ292767) RNA Binding Protein 45 [Nicotian... 33 0.70
pir||T01932 RNA binding protein homolog - common tobacco (f... 33 0.70
gb|AAD01997.1| (AF034741) heterogeneous nuclear ribonucleop... 33 0.70
emb|CAC01238.1| (AJ292768) RNA Binding Protein 47 [Nicotian... 33 0.70
gb|AAF15091.1| (AF110846) sex-lethal homolog [Megaselia sca... 33 0.70
pir||T03934 DNA binding protein ACBF - common tobacco >gi|1... 33 0.70
gb|AAF48215.2| (AE003491) fne gene product [Drosophila mela... 33 0.70
gb|AAF43091.1|AF239667_1 (AF239667) putative RNA binding pr... 33 0.70
emb|CAB77630.1| (AJ390490) spliceosome-associated essential... 33 0.70
sp|O13759|CSX1_SCHPO RNA-BINDING POST-TRANSCRIPTIONAL REGUL... 33 0.70
pir||S49463 RNA-binding protein RNP1 precursor - kidney bea... 33 0.70
dbj|BAA11919.1| (D83418) ORF, start codon and stop codon ar... 33 0.70
gb|AAF15092.1| (AF110846) sex-lethal homolog [Megaselia sca... 33 0.70
gb|AAC16917.1| (U36610) Y-chromosome RNA recognition motif ... 33 0.92
sp|P15771|NUCL_CHICK NUCLEOLIN (PROTEIN C23) >gi|70845|pir|... 33 0.92
ref|XP_018417.2| RNA binding motif protein, Y chromosome, f... 33 0.92
ref|NP_005049.1| RNA binding motif protein, Y chromosome, f... 33 0.92
ref|XP_033819.1| similar to RNA binding motif protein, Y ch... 33 0.92
gb|AAG13056.1|AC011807_15 (AC011807) Putative Poly-A Bindin... 33 0.92
sp|P52299|CB20_XENLA 20 KDA NUCLEAR CAP BINDING PROTEIN (NC... 33 0.92
gb|AAD27631.1|AF128457_5 (AF128457) putative nucleolysin [O... 33 0.92
ref|NP_033059.1| RNA binding motif protein, X chromosome re... 33 0.92
ref|XP_003131.3| nuclear cap binding protein subunit 2, 20k... 33 0.92
ref|NP_080830.1| RIKEN cDNA 5930413E18 gene [Mus musculus] ... 33 0.92
ref|NP_033409.1| Tial1 cytotoxic granule-associated RNA-bin... 32 1.2
emb|CAB44733.1| (AL049824) dJ117L23.1 (Cyclophilin 33 (Pept... 32 1.2
gb|AAC00007.1| (AF042386) cyclophilin-33B [Homo sapiens] >g... 32 1.2
ref|NP_003243.1| TIA1 cytotoxic granule-associated RNA-bind... 32 1.2
gb|AAH10496.1|AAH10496 (BC010496) TIA1 cytotoxic granule-as... 32 1.2
ref|NP_071728.1| TIA1 cytotoxic granule-associated RNA-bind... 32 1.2
gb|AAD27678.1|AF119222_10 (AF119222) TIA-1 related protein ... 32 1.2
ref|NP_062362.1| peptidylprolyl isomerase E (cyclophilin E)... 32 1.2
ref|NP_006103.1| peptidylprolyl isomerase E (cyclophilin E)... 32 1.2
sp|Q9V3G3|CYPE_DROME PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E ... 32 1.2
gb|AAC00006.1| (AF042385) cyclophilin-33A [Homo sapiens] 32 1.2
gb|AAF66824.1|AF190656_1 (AF190656) poly(A)-binding protein... 32 1.2
dbj|BAB02953.1| (AP000419) DNA/RNA binding protein-like [Ar... 32 1.2
ref|NP_009210.1| U2 small nuclear ribonucleoprotein auxilia... 32 1.6
pir||S20250 splicing factor U2AF large chain - human >gi|22... 32 1.6
gb|AAA65224.1| (U24123) polyadenylate-binding protein [Caen... 32 1.6
pir||T26427 hypothetical protein Y106G6H.2 - Caenorhabditis... 32 1.6
ref|NP_037425.1| transformer-2 alpha (htra-2 alpha) [Homo s... 32 1.6
emb|CAB89426.1| (AL109839) dJ1069P2.3.4 (novel PABPC1 (poly... 32 1.6
pir||T40350 probable polyadenylation factor - fission yeast... 32 1.6
emb|CAB89423.1| (AL109839) dJ1069P2.3.1 (novel PABPC1 (poly... 32 1.6
gb|AAH04587.1|AAH04587 (BC004587) Unknown (protein for IMAG... 32 1.6
emb|CAB89425.1| (AL109839) dJ1069P2.3.3 (novel PABPC1 (poly... 32 1.6
emb|CAB08591.1| (Z95327) Cleavage Stimulation Factor (CF-1,... 32 1.6
pir||T06458 nucleolin homolog - garden pea >gi|940288|gb|AA... 32 1.6
gb|AAA48983.1| (M21791) nucleolin/C23 [Gallus gallus] 32 1.6
ref|XP_042053.1| 59875 [Homo sapiens] 32 1.6
ref|NP_002559.1| poly(A)-binding protein, cytoplasmic 1 [Ho... 32 1.6
sp|Q15097|PAB2_HUMAN POLYADENYLATE-BINDING PROTEIN 2 (POLY(... 32 1.6
ref|XP_042055.1| poly(A)-binding protein, cytoplasmic 1 [Ho... 32 1.6
gb|AAG31814.1|AF317552_1 (AF317552) polyadenylation protein... 32 1.6
ref|XP_037524.1| testis-specific poly(A)-binding protein 3 ... 32 1.6
ref|NP_112241.1| testis-specific poly(A)-binding protein (P... 32 1.6
emb|CAB66834.1| (AL136900) hypothetical protein [Homo sapiens] 32 1.6
emb|CAC21554.1| (AJ298278) poly(A) binding protein [Rattus ... 32 1.6
sp|P11940|PAB1_HUMAN POLYADENYLATE-BINDING PROTEIN 1 (POLY(... 32 1.6
ref|NP_032800.1| poly A binding protein, cytoplasmic 1; pol... 32 1.6
gb|AAH03870.1|AAH03870 (BC003870) poly A binding protein, c... 32 1.6
ref|XP_042054.1| poly(A)-binding protein, cytoplasmic 1 [Ho... 32 1.6
gb|AAB50269.1| (U17394) polyadenylation factor 64 kDa subun... 32 1.6
emb|CAB41262.1| (Z78021) CSTF2 (cleavage stimulation factor... 32 1.6
sp|Q9QZH3|CYPE_MOUSE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E ... 32 1.6
ref|NP_001316.1| cleavage stimulation factor subunit 2 [Hom... 32 1.6
emb|CAB89424.1| (AL109839) dJ1069P2.3.2 (novel PABPC1 (poly... 32 1.6
dbj|BAB09337.1| (AB016879) contains similarity to RNA-bindi... 32 1.6
gb|AAG59664.1|AC084319_22 (AC084319) putative RNA binding p... 32 2.0
gb|AAF23589.1|AF114818_1 (AF114818) Ro ribonucleoprotein-bi... 32 2.0
gb|AAH10601.1|AAH10601 (BC010601) Similar to siah binding p... 32 2.0
pir||T34506 hypothetical protein ZK1290.4 - Caenorhabditis ... 32 2.0
>ref|NP_067631.1| RNA binding motif protein 8B [Homo sapiens]
ref|XP_016961.1| 33640 [Homo sapiens]
ref|XP_034628.1| 33726 [Homo sapiens]
gb|AAG14951.1|AF182415_1 (AF182415) MDS014 [Homo sapiens]
gb|AAG16782.1|AF231512_1 (AF231512) RNA binding motif protein 8B [Homo sapiens]
Length = 158
Score = 67.4 bits (163), Expect = 3e-11
Identities = 34/66 (51%), Positives = 43/66 (64%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRS 200
RTGY KGY LVEY ++EAQ A+ +NG L+ + I VDW F RGP + R +RRS
Sbjct: 93 RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG--KRRGGRRRS 150
Query: 201 RTPPRR 218
R+P RR
Sbjct: 151 RSPDRR 156
>ref|XP_034627.1| 33716 [Homo sapiens]
ref|XP_034629.1| 33718 [Homo sapiens]
gb|AAF37551.1|AF198620_1 (AF198620) RNA binding motif protein 8 [Homo sapiens]
gb|AAG16781.1|AF231511_1 (AF231511) RNA binding motif protein 8A [Homo sapiens]
dbj|BAB26820.1| (AK010284) putative [Mus musculus]
Length = 173
Score = 67.4 bits (163), Expect = 3e-11
Identities = 34/66 (51%), Positives = 43/66 (64%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRS 200
RTGY KGY LVEY ++EAQ A+ +NG L+ + I VDW F RGP + R +RRS
Sbjct: 108 RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG--KRRGGRRRS 165
Query: 201 RTPPRR 218
R+P RR
Sbjct: 166 RSPDRR 171
>ref|NP_080151.1| RNA binding motif protein [Mus musculus]
dbj|BAB26605.1| (AK009953) putative [Mus musculus]
Length = 173
Score = 67.4 bits (163), Expect = 3e-11
Identities = 34/66 (51%), Positives = 43/66 (64%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRS 200
RTGY KGY LVEY ++EAQ A+ +NG L+ + I VDW F RGP + R +RRS
Sbjct: 108 RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG--KRRGGRRRS 165
Query: 201 RTPPRR 218
R+P RR
Sbjct: 166 RSPDRR 171
>ref|NP_005096.1| RNA binding motif protein 8A; RNA binding motif protein 8B [Homo
sapiens]
ref|XP_016960.1| 33712 [Homo sapiens]
ref|XP_034626.1| 33652 [Homo sapiens]
sp|Q9Y5S9|RBM8_HUMAN RNA-BINDING PROTEIN 8 (RNA BINDING MOTIF PROTEIN 8)
(RIBONUCLEOPROTEIN RBM8) (RNA-BINDING PROTEIN Y14)
gb|AAD21089.1| (AF127761) ribonucleoprotein RBM8 [Homo sapiens]
gb|AAF29078.1|AF161463_1 (AF161463) HSPC114 [Homo sapiens]
gb|AAG27091.1|AF299118_1 (AF299118) RNA-binding protein Y14 [Homo sapiens]
Length = 174
Score = 67.4 bits (163), Expect = 3e-11
Identities = 34/66 (51%), Positives = 43/66 (64%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRS 200
RTGY KGY LVEY ++EAQ A+ +NG L+ + I VDW F RGP + R +RRS
Sbjct: 109 RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG--KRRGGRRRS 166
Query: 201 RTPPRR 218
R+P RR
Sbjct: 167 RSPDRR 172
>ref|XP_002094.3| RNA binding motif protein 8A [Homo sapiens]
Length = 174
Score = 67.4 bits (163), Expect = 3e-11
Identities = 33/66 (50%), Positives = 43/66 (65%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRS 200
RTGY KGY LVEY ++EAQ A+ +NG L+ + I +DW F RGP + R +RRS
Sbjct: 109 RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGRPISIDWCFVRGPPKG--KRRGGRRRS 166
Query: 201 RTPPRR 218
R+P RR
Sbjct: 167 RSPDRR 172
>gb|AAG27092.1|AF299119_1 (AF299119) RNA-binding protein Y14 [Xenopus laevis]
Length = 174
Score = 64.7 bits (156), Expect = 2e-10
Identities = 32/66 (48%), Positives = 43/66 (64%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRS 200
RTG+ KGYALVEY ++EA A+ +NG L+ + + VDW F RGP + R +RRS
Sbjct: 109 RTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG--KRRSGRRRS 166
Query: 201 RTPPRR 218
R+P RR
Sbjct: 167 RSPERR 172
>gb|AAG52616.1|AC024261_3 (AC024261) RNA-binding protein, putative; 35994-37391 [Arabidopsis
thaliana]
Length = 191
Score = 64.7 bits (156), Expect = 2e-10
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGP 158
R+GY KGYAL+EY EEAQ+AI +MNG +LLT+ + VDWAF+ GP
Sbjct: 131 RSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 176
>gb|AAF58987.1| (AE003834) CG8781 gene product [Drosophila melanogaster]
Length = 165
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGP 158
RTG+ KGYALVEY ++A A ++NG +++ +TI VDW F +GP
Sbjct: 109 RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154
>pir||S43599 Snf5 homolog R07E5.3 - Caenorhabditis elegans
Length = 529
Score = 49.3 bits (116), Expect = 9e-06
Identities = 24/45 (53%), Positives = 29/45 (64%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
RTG+ KGYALVEY +EA AI N T LL + + VDW F +G
Sbjct: 478 RTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVDWCFVKG 522
>emb|CAA83626.1| (Z32683) contains similarity to Pfam domain: PF00076 (RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)),
Score=81.1, E-value=7.5e-21, N=1~cDNA EST yk106b2.3
comes from this gene; cDNA EST yk97f6.3 comes from this
gene~cDNA EST yk89g10.5 comes fr>
Length = 142
Score = 49.3 bits (116), Expect = 9e-06
Identities = 24/45 (53%), Positives = 29/45 (64%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
RTG+ KGYALVEY +EA AI N T LL + + VDW F +G
Sbjct: 91 RTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVDWCFVKG 135
>pir||T38229 probable ribonucleoprotein - fission yeast (Schizosaccharomyces
pombe)
emb|CAA16983.1| (AL021813) putative ribonucleoprotein [Schizosaccharomyces pombe]
Length = 121
Score = 47.4 bits (111), Expect = 4e-05
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRS 200
RTGY KGYAL+EY E+AQ A+ N LL + + VD+AF P + + + RS
Sbjct: 46 RTGYVKGYALIEYATLEQAQKAVDEKN-LSLLDEKLEVDFAFLEPPERAPRPSISTRSRS 104
Query: 201 RTP 209
++P
Sbjct: 105 QSP 107
>dbj|BAB16700.1| (AB041639) TIA-1 like protein [Bombyx mori]
Length = 285
Score = 45.4 bits (106), Expect = 1e-04
Identities = 20/68 (29%), Positives = 39/68 (56%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARP 185
+ + +T KGYA V + +A+ AI++MNG L +++I +W+ + P + V P
Sbjct: 127 IVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAP 186
Query: 186 AQRRSRTP 209
+ +R++ P
Sbjct: 187 SSKRAKQP 194
Score = 33.5 bits (75), Expect = 0.54
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 42 YALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
YA +E+ C A TA+ +MN +L K + V+WA + G
Sbjct: 48 YAFLEFTCHTAAATALAAMNKRVVLDKEMKVNWATSPG 85
>dbj|BAA32663.1| (AB017339) similar to TIA-1 [Bombyx mori]
Length = 285
Score = 45.4 bits (106), Expect = 1e-04
Identities = 20/68 (29%), Positives = 39/68 (56%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARP 185
+ + +T KGYA V + +A+ AI++MNG L +++I +W+ + P + V P
Sbjct: 127 IVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAP 186
Query: 186 AQRRSRTP 209
+ +R++ P
Sbjct: 187 SSKRAKQP 194
Score = 33.1 bits (74), Expect = 0.70
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 42 YALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
YA +E+ C A TA+ +MN +L K + V+WA + G
Sbjct: 48 YAFLEFTCHTAAVTALAAMNKRVVLDKEMKVNWATSPG 85
>gb|AAK21429.1| (U00052) contains similarity to Pfam domain PF00076 (rrm),
Score=72.6, E-value=2.6e-18, N=1 [Caenorhabditis
elegans]
Length = 205
Score = 42.7 bits (99), Expect = 9e-04
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 36 KGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRSRTPPR 215
+GY VEY E+A+ +I+ M+G Q+ +HV+ R + + P +RRS P
Sbjct: 91 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGRQSVPFQRRSSPFRRRSPPPRD 150
Query: 216 RLAAM 230
R++ M
Sbjct: 151 RMSPM 155
>pir||T16535 hypothetical protein K02F3.11 - Caenorhabditis elegans
Length = 304
Score = 42.7 bits (99), Expect = 9e-04
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 36 KGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRSRTPPR 215
+GY VEY E+A+ +I+ M+G Q+ +HV+ R + + P +RRS P
Sbjct: 190 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGRQSVPFQRRSSPFRRRSPPPRD 249
Query: 216 RLAAM 230
R++ M
Sbjct: 250 RMSPM 254
>sp|Q09442|YP85_CAEEL HYPOTHETICAL 40.9 KDA PROTEIN C08B11.5 IN CHROMOSOME II
pir||T19069 hypothetical protein C08B11.5 - Caenorhabditis elegans
Length = 379
Score = 42.0 bits (97), Expect = 0.002
Identities = 18/49 (36%), Positives = 29/49 (58%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
+ +V +G KG+A + + FE + TA+ +MNG L + I V +AF R
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 180
>emb|CAB60993.1| (Z46676) contains similarity to Pfam domain: PF00076 (RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)),
Score=161.0, E-value=6.5e-45, N=2~cDNA EST yk68c11.5
comes from this gene~cDNA EST yk68c11.3 comes from this
gene~cDNA EST yk158d11.3 comes >
Length = 389
Score = 42.0 bits (97), Expect = 0.002
Identities = 18/49 (36%), Positives = 29/49 (58%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
+ +V +G KG+A + + FE + TA+ +MNG L + I V +AF R
Sbjct: 142 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 190
>gb|AAC47514.1| (U24189) RRM-type RNA binding protein [Caenorhabditis elegans]
Length = 398
Score = 42.0 bits (97), Expect = 0.002
Identities = 18/49 (36%), Positives = 29/49 (58%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
+ +V +G KG+A + + FE + TA+ +MNG L + I V +AF R
Sbjct: 142 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 190
>pir||JC5437 spliceosome-associated protein 49 - Caenorhabditis elegans
Length = 388
Score = 42.0 bits (97), Expect = 0.002
Identities = 18/49 (36%), Positives = 29/49 (58%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
+ +V +G KG+A + + FE + TA+ +MNG L + I V +AF R
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 180
>ref|NP_005841.1| splicing factor 3b, subunit 4, 49kD; spliceosome-associated protein
(U2 snRNP) [Homo sapiens]
ref|XP_001943.1| splicing factor 3b, subunit 4, 49kD [Homo sapiens]
ref|XP_051919.1| splicing factor 3b, subunit 4, 49kD [Homo sapiens]
sp|Q15427|SP49_HUMAN SPLICEOSOME ASSOCIATED PROTEIN 49 (SAP 49) (SF3B53)
pir||A54964 spliceosome-associated protein SAP-49 - human
gb|AAA60300.1| (L35013) spliceosomal protein [Homo sapiens]
gb|AAH04273.1|AAH04273 (BC004273) splicing factor 3b, subunit 4, 49kD [Homo sapiens]
Length = 424
Score = 41.6 bits (96), Expect = 0.002
Identities = 26/81 (32%), Positives = 35/81 (43%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRSR 203
TG KGYA + + F+ + AI +MNG L + I V +AF + +R
Sbjct: 138 TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD--------SKGERHGS 189
Query: 204 TPPRRLAAMTY*EGAARPAML 266
R LAA A RP L
Sbjct: 190 AAERLLAAQNPLSQADRPHQL 210
Score = 30.0 bits (66), Expect = 6.0
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG +GY VE+ E+A AI+ MN +L K I V+ A
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKA 89
>pir||T38618 probable splicosome associated proteinRNA binding protein - fission
yeast (Schizosaccharomyces pombe) (fragment)
emb|CAB11685.1| (Z98979) RNA binding protein; possibly spiceosome associated by
similarity [Schizosaccharomyces pombe]
Length = 229
Score = 41.2 bits (95), Expect = 0.003
Identities = 21/47 (44%), Positives = 24/47 (50%)
Frame = +3
Query: 12 AEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
A G KGY V Y FE A AI +MN L+ K I V +AF R
Sbjct: 26 ARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR 72
>emb|CAB60356.1| (AL110485) contains similarity to Pfam domain: PF00076 (RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)),
Score=204.9, E-value=4e-58, N=3~cDNA EST yk345b8.5 comes
from this gene [Caenorhabditis elegans]
Length = 434
Score = 40.4 bits (93), Expect = 0.004
Identities = 21/47 (44%), Positives = 28/47 (58%), Gaps = 1/47 (2%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFN-RGPIQN 167
G YA VE+ +A A++S NG +LL K +HV WAF R P +N
Sbjct: 75 GLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGEN 122
Score = 38.9 bits (89), Expect = 0.013
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
T GKGY V Y E+A+ AI MNG L +TI +WA
Sbjct: 169 TNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
Score = 30.0 bits (66), Expect = 6.0
Identities = 19/62 (30%), Positives = 30/62 (47%)
Frame = +3
Query: 15 EVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQR 194
EVRT +GYA V++ E A AI MN + + + W ++ S +P++R
Sbjct: 283 EVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWG------KSGDSGKPSER 336
Query: 195 RS 200
S
Sbjct: 337 GS 338
>gb|AAK20026.1|AF234184_1 (AF234184) sex-lethal protein SXL2 [Lucilia cuprina]
Length = 325
Score = 39.3 bits (90), Expect = 0.010
Identities = 17/46 (36%), Positives = 28/46 (59%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GYA V++ +AQ AI+S+NG + K + V +A
Sbjct: 133 IMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYA 178
>sp|O97018|SXL_CHRRU SEX-LETHAL PROTEIN HOMOLOG
Length = 307
Score = 39.3 bits (90), Expect = 0.010
Identities = 17/46 (36%), Positives = 28/46 (59%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GYA V++ +AQ AI+S+NG + K + V +A
Sbjct: 116 IMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYA 161
>gb|AAK20025.1|AF234183_1 (AF234183) sex-lethal protein SXL1 [Lucilia cuprina]
Length = 324
Score = 39.3 bits (90), Expect = 0.010
Identities = 17/46 (36%), Positives = 28/46 (59%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GYA V++ +AQ AI+S+NG + K + V +A
Sbjct: 133 IMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYA 178
>pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 38.9 bits (89), Expect = 0.013
Identities = 20/46 (43%), Positives = 24/46 (51%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
V + T KGY V Y EEA+ AI MNG L +TI +WA
Sbjct: 206 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 251
Score = 34.7 bits (78), Expect = 0.24
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQN 167
+ + TG YA VE+ +A A+++MN LL + + V+WA G Q+
Sbjct: 114 IHTDTETGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQS 167
>gb|AAK68192.1|U28944_6 (U28944) Hypothetical protein C18A3.5b [Caenorhabditis elegans]
Length = 376
Score = 38.9 bits (89), Expect = 0.013
Identities = 20/46 (43%), Positives = 24/46 (51%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
V + T KGY V Y EEA+ AI MNG L +TI +WA
Sbjct: 134 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 179
>gb|AAK68191.1|U28944_5 (U28944) Hypothetical protein C18A3.5a [Caenorhabditis elegans]
Length = 408
Score = 38.9 bits (89), Expect = 0.013
Identities = 20/46 (43%), Positives = 24/46 (51%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
V + T KGY V Y EEA+ AI MNG L +TI +WA
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 31.6 bits (70), Expect = 2.0
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQN 167
G YA VE+ +A A+++MN LL + + V+WA G Q+
Sbjct: 81 GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQS 127
>emb|CAC18197.1| (AL451015) probable spliceosome-associated protein SAP-49
[Neurospora crassa]
Length = 390
Score = 38.9 bits (89), Expect = 0.013
Identities = 17/39 (43%), Positives = 25/39 (63%)
Frame = +3
Query: 36 KGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
KGY V +G FE + A +MNG LL+K I V++A+ +
Sbjct: 140 KGYGFVSFGSFEASDAARATMNGQYLLSKQITVEYAYKK 178
>gb|AAF50933.1| (AE003573) CG9561 gene product [Drosophila melanogaster]
Length = 708
Score = 38.5 bits (88), Expect = 0.017
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 17/68 (25%)
Frame = +3
Query: 33 GKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVD----------W-------AFNRGPI 161
G+GYA VEY E+ +AI+ MNG Q+ K I V W NR
Sbjct: 576 GRGYAFVEYSRPEDCASAIKHMNGGQIDGKLIRVSAFQESMLKAPWRQYRRYSPVNRRQS 635
Query: 162 QNVTSARPAQRRSRTPPRRLAAMTY 236
Q S + RSR+P R + Y
Sbjct: 636 QRTLSRSGSSSRSRSPSRSASGSEY 660
>gb|AAC38968.1| (AF026145) sex-lethal homolog CcSXL [Ceratitis capitata]
Length = 340
Score = 38.5 bits (88), Expect = 0.017
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GYA V++ ++Q AI+S+NG + K + V +A
Sbjct: 133 IMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYA 178
>gb|AAD23688.1|AC006841_21 (AC006841) hypothetical protein [Arabidopsis thaliana]
Length = 1003
Score = 38.5 bits (88), Expect = 0.017
Identities = 19/55 (34%), Positives = 27/55 (48%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPA 188
TG KG+A V++ C ++A AI+ NG + I VDWA + A A
Sbjct: 368 TGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATTA 422
>sp|O61374|SXL_CERCA SEX-LETHAL PROTEIN HOMOLOG (CCSXL)
Length = 348
Score = 38.5 bits (88), Expect = 0.017
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GYA V++ ++Q AI+S+NG + K + V +A
Sbjct: 141 IMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYA 186
>ref|XP_031044.1| similar to SPLICEOSOME ASSOCIATED PROTEIN 49 (SAP 49) (SF3B53) (H.
sapiens) [Homo sapiens]
Length = 245
Score = 38.1 bits (87), Expect = 0.022
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
TG KGYA + + F+ + AI +MNG L I V +AF +
Sbjct: 65 TGNSKGYAFINFASFDASVAAIEAMNGQYLCNHPITVSYAFEK 107
>emb|CAA65831.1| (X97197) spliceosomal protein [Drosophila melanogaster]
Length = 366
Score = 37.7 bits (86), Expect = 0.029
Identities = 24/87 (27%), Positives = 36/87 (40%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARP 185
+ + TG K +A + + FE + A+ +MNG L + I V +AF +
Sbjct: 151 IMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKD--------HK 202
Query: 186 AQRRSRTPPRRLAAMTY*EGAARPAML 266
+R R LAA A RP L
Sbjct: 203 GERHGSAAERLLAAQNPSTHADRPHQL 229
>gb|AAF46136.1| (AE003437) Spx gene product [Drosophila melanogaster]
Length = 347
Score = 37.7 bits (86), Expect = 0.029
Identities = 24/87 (27%), Positives = 36/87 (40%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARP 185
+ + TG K +A + + FE + A+ +MNG L + I V +AF +
Sbjct: 132 IMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKD--------HK 183
Query: 186 AQRRSRTPPRRLAAMTY*EGAARPAML 266
+R R LAA A RP L
Sbjct: 184 GERHGSAAERLLAAQNPSTHADRPHQL 210
>gb|AAK48899.1|AF357912_1 (AF357912) ribonucleoprotein [Labeo rohita]
Length = 179
Score = 37.7 bits (86), Expect = 0.029
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSA 179
TG GY V Y ++A+ AI ++NG +L TKTI V+ AF++ P +TSA
Sbjct: 112 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVE-AFSQSPF--LTSA 160
>gb|AAB81985.1| (AF025689) Sex-lethal protein [Musca domestica]
Length = 318
Score = 37.4 bits (85), Expect = 0.037
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GYA V++ +AQ AI+++NG + K + V +A
Sbjct: 126 IMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYA 171
>sp|O17310|SXL_MUSDO SEX-LETHAL PROTEIN HOMOLOG
gb|AAB81986.1| (AF025690) Sex-lethal protein [Musca domestica]
Length = 324
Score = 37.4 bits (85), Expect = 0.037
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GYA V++ +AQ AI+++NG + K + V +A
Sbjct: 133 IMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYA 178
>dbj|BAB02974.1| (AP000600) RNA binding protein nucleolysin; oligouridylate binding
protein [Arabidopsis thaliana]
Length = 427
Score = 37.0 bits (84), Expect = 0.049
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+TG +G+ V + ++AQTAI MNG L ++ I +WA
Sbjct: 180 KTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/45 (35%), Positives = 23/45 (50%)
Frame = +3
Query: 42 YALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTS 176
Y V Y A AI S+NG L + I V+WA+ G ++ +S
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSS 142
>gb|AAA02808.1| (L01797) RNA-binding protein [Saccharomyces cerevisiae]
Length = 429
Score = 36.6 bits (83), Expect = 0.064
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 15 EVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
+++TG +GY V + ++AQ A+ SM G L + + ++WA R
Sbjct: 196 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 33.9 bits (76), Expect = 0.41
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 42 YALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAF 146
YA VEY +A A++++NG Q+ + ++WAF
Sbjct: 117 YAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 151
>sp|Q60900|ELV3_MOUSE ELAV-LIKE PROTEIN 3 (HU-ANTIGEN C) (HUC)
gb|AAC52999.1| (U29148) mHuC-L [Mus musculus]
Length = 367
Score = 36.6 bits (83), Expect = 0.064
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y +A AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>pir||JC2116 hippocampal 38K autoantigen protein - human
dbj|BAA21838.1| (D26158) PLE21 protein [Homo sapiens]
Length = 350
Score = 36.6 bits (83), Expect = 0.064
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y +A AI ++NG +L TKTI V +A
Sbjct: 67 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 106
>dbj|BAB02219.1| (AP001303) contains similarity to nucleolin, protein localized in
the nucleoli~gene_id:K24M9.10 [Arabidopsis thaliana]
Length = 610
Score = 36.6 bits (83), Expect = 0.064
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQ-RRSR 203
G KGY +E+ EEAQ A+ MNG LL + + +D A RG +N R + +SR
Sbjct: 395 GSFKGYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSR 453
Query: 204 T 206
T
Sbjct: 454 T 454
>ref|NP_014382.1| poly(A)+ RNA-binding protein; Pub1p [Saccharomyces cerevisiae]
pir||S62928 polyadenylated RNA-binding protein PUB1 - yeast (Saccharomyces
cerevisiae)
emb|CAA95877.1| (Z71292) ORF YNL016w [Saccharomyces cerevisiae]
Length = 453
Score = 36.6 bits (83), Expect = 0.064
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 15 EVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
+++TG +GY V + ++AQ A+ SM G L + + ++WA R
Sbjct: 196 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 33.9 bits (76), Expect = 0.41
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 42 YALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAF 146
YA VEY +A A++++NG Q+ + ++WAF
Sbjct: 117 YAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 151
>ref|XP_032784.1| Hu antigen C [Homo sapiens]
Length = 352
Score = 36.6 bits (83), Expect = 0.064
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y +A AI ++NG +L TKTI V +A
Sbjct: 68 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 107
>sp|P32588|PUB1_YEAST NUCLEAR AND CYTOPLASMIC POLYADENYLATED RNA-BINDING PROTEIN PUB1
(ARS CONSENSUS BINDING PROTEIN ACBP-60) (POLY(U)-BINDING
PROTEIN) (POLY URIDYLATE-BINDING PROTEIN)
gb|AAC37348.1| (L13725) RNA-binding protein [Saccharomyces cerevisiae]
gb|AAC37364.1| (L20767) poly(A)-binding protein [Saccharomyces cerevisiae]
Length = 453
Score = 36.6 bits (83), Expect = 0.064
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 15 EVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
+++TG +GY V + ++AQ A+ SM G L + + ++WA R
Sbjct: 196 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 33.9 bits (76), Expect = 0.41
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 42 YALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAF 146
YA VEY +A A++++NG Q+ + ++WAF
Sbjct: 117 YAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 151
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 36.6 bits (83), Expect = 0.064
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y +A AI ++NG +L TKTI V +A
Sbjct: 42 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 81
>sp|Q14576|ELV3_HUMAN ELAV-LIKE PROTEIN 3 (HU-ANTIGEN C) (HUC) (PARANEOPLASTIC CEREBELLAR
DEGENERATION-ASSOCIATED ANTIGEN) (PARANEOPLASTIC LIMBIC
ENCEPHALITIS ANTIGEN 21)
Length = 359
Score = 36.6 bits (83), Expect = 0.064
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y +A AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>ref|XP_012805.3| Hu antigen C [Homo sapiens]
gb|AAK57545.1| (AY034002) Hu antigen C long [Homo sapiens]
Length = 318
Score = 36.6 bits (83), Expect = 0.064
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y +A AI ++NG +L TKTI V +A
Sbjct: 27 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 66
>ref|XP_032785.1| Hu antigen C [Homo sapiens]
Length = 360
Score = 36.6 bits (83), Expect = 0.064
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y +A AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>gb|AAD00327.1| (U79565) RBM1 [Macropus eugenii]
Length = 402
Score = 36.2 bits (82), Expect = 0.083
Identities = 24/66 (36%), Positives = 33/66 (49%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRSR 203
T +G+A V + A+ A R MNG L K+I V+ A N+ ++ P RSR
Sbjct: 44 TNKSRGFAFVTFESPAAAKDAARDMNGKALDGKSIKVEQA-NKPSFESGRRGPPPAPRSR 102
Query: 204 TPPRRL 221
PPR L
Sbjct: 103 GPPRGL 108
>ref|NP_034618.1| HU-antigen D [Mus musculus]
gb|AAC40080.1| (AF041341) RNA binding protein Elavl4 [Mus musculus]
Length = 346
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>emb|CAC42819.1| (AJ299082) Poly(A)-binding protein [Macaca mulatta]
emb|CAC42821.1| (AJ299081) Poly(A)-binding protein [Miopithecus talapoin]
Length = 382
Score = 36.2 bits (82), Expect = 0.083
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 18 VRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHV 134
+ G GKG+ +V + FEEA A+ MNG + +K +HV
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373
>emb|CAC01696.1| (AJ245662) sex-lethal homologue [Megaselia scalaris]
Length = 321
Score = 36.2 bits (82), Expect = 0.083
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GY V++G +A AI ++NG + K I V +A
Sbjct: 109 IMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFA 154
>ref|XP_005409.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 [Homo
sapiens]
Length = 346
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>pir||I39077 RNA-binding protein Hel-N2 - human
gb|AAA70417.1| (U29943) Hel-N2 [Homo sapiens]
Length = 346
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/49 (32%), Positives = 26/49 (52%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
V + T KG+ V ++EA AIRS+NG +L + + V + N+
Sbjct: 294 VIRDFNTNKCKGFGFVTMTNYDEAAMAIRSLNGYRLGDRVLQVSFKTNK 342
>ref|XP_027588.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Homo sapiens]
ref|XP_027585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Homo sapiens]
Length = 380
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
>pir||I50513 ribonucleoprotein - zebra fish
gb|AAA96940.1| (U17602) ribonucleoprotein [Danio rerio]
Length = 367
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 81 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 120
>ref|NP_068771.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D); Embryonic lethal, abnormal vision,
Drosophila, homolog of, like-4 [Homo sapiens]
sp|P26378|ELV4_HUMAN ELAV-LIKE PROTEIN 4 (PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD)
(HU-ANTIGEN D)
pir||A40348 Elav/Sex-lethal related protein, brain - human
gb|AAA58396.1| (M62843) brain protein [Homo sapiens]
gb|AAK57541.1| (AY033998) HUDPRO1 [Homo sapiens]
Length = 380
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
>ref|XP_017931.1| 61842 [Homo sapiens]
Length = 256
Score = 36.2 bits (82), Expect = 0.083
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRGPIQNVTSARPAQRRSR 203
T G+A V + +A+ A R MNG L K I V+ A N+ ++ P RSR
Sbjct: 45 TNKSGGFAFVTFESPADAKDAARDMNGKSLDGKAIEVEQA-NKPSFESGRRGPPPPPRSR 103
Query: 204 TPPRRL 221
PPR L
Sbjct: 104 GPPRGL 109
>ref|XP_035852.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 [Homo
sapiens]
emb|CAC22160.1| (AL161628) bA31K16.2 (ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2) [Homo sapiens]
Length = 359
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ref|NP_004423.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2;
Embryonic lethal, abnormal vision, Drosophila, homolog
of, like-2; HuB [Homo sapiens]
sp|Q12926|ELV2_HUMAN ELAV-LIKE PROTEIN 2 (HU-ANTIGEN B) (HUB) (ELAV-LIKE NEURONAL
PROTEIN 1) (NERVOUS SYSTEM-SPECIFIC RNA BINDING PROTEIN
HEL-N1)
pir||I38726 ELAV-like neuronal protein 1 - human
gb|AAA69698.1| (U12431) ELAV-like neuronal protein 1 [Homo sapiens]
Length = 359
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/49 (32%), Positives = 26/49 (52%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
V + T KG+ V ++EA AIRS+NG +L + + V + N+
Sbjct: 307 VIRDFNTNKCKGFGFVTMTNYDEAAMAIRSLNGYRLGDRVLQVSFKTNK 355
>ref|XP_027586.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Homo sapiens]
gb|AAK57539.1| (AY033996) HUD4 [Homo sapiens]
Length = 383
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 100 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
>ref|XP_027587.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Homo sapiens]
gb|AAK57538.1| (AY033995) HUD3 [Homo sapiens]
Length = 366
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
>ref|XP_018255.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Homo sapiens]
gb|AAK57540.1| (AY033997) HUD1 [Homo sapiens]
Length = 366
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
>pir||I51678 ribonucleoprotein - African clawed frog
gb|AAA96945.1| (U17599) ribonucleoprotein [Xenopus laevis]
Length = 366
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
>gb|AAD50508.1|AF176675_1 (AF176675) RNA-binding protein HuD [Gallus gallus]
Length = 371
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
>dbj|BAB29173.1| (AK014133) putative [Mus musculus]
Length = 371
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
>sp|Q61701|ELV4_MOUSE ELAV-LIKE PROTEIN 4 (PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD)
(HU-ANTIGEN D)
pir||JC2298 RNA-binding protein HuD homolog - mouse
dbj|BAA06723.1| (D31953) HuD [Mus musculus]
Length = 385
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
>sp|O09032|ELV4_RAT ELAV-LIKE PROTEIN 4 (PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD)
(HU-ANTIGEN D)
gb|AAB50733.1| (S83320) HuD=neurospecific RNA binding protein [rats, hypothalamus,
Peptide, 373 aa] [Rattus sp.]
Length = 373
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>emb|CAB61831.1| (X98771) Sex-lethal orthologous protein [Megaselia scalaris]
Length = 121
Score = 36.2 bits (82), Expect = 0.083
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GY V++G +A AI ++NG + K I V +A
Sbjct: 48 IMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFA 93
>ref|NP_034616.1| HU-antigen; HU-antigen B [Mus musculus]
sp|Q60899|ELV2_MOUSE ELAV-LIKE PROTEIN 2 (HU-ANTIGEN B) (HUB) (ELAV-LIKE NEURONAL
PROTEIN 1) (NERVOUS SYSTEM-SPECIFIC RNA BINDING PROTEIN
MEL-N1)
pir||JC6057 RNA-binding protein Mel-N1, nervous system-specific - mouse
gb|AAC52644.1| (U29088) nervous system-specific RNA binding protein Mel-N1 [Mus
musculus]
Length = 360
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>dbj|BAB03001.1| (AP001297) glycine-rich RNA binding protein-like [Arabidopsis
thaliana]
Length = 136
Score = 36.2 bits (82), Expect = 0.083
Identities = 17/49 (34%), Positives = 27/49 (54%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
V A+ TG +G+ V + C + A AI+ M+G +L + I V+ A R
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>sp|O01671|SXL_MEGSC SEX-LETHAL PROTEIN HOMOLOG
Length = 307
Score = 36.2 bits (82), Expect = 0.083
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GY V++G +A AI ++NG + K I V +A
Sbjct: 95 IMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFA 140
>emb|CAA04179.2| (AJ000546) Sex-lethal orthologous protein [Megaselia scalaris]
Length = 307
Score = 36.2 bits (82), Expect = 0.083
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GY V++G +A AI ++NG + K I V +A
Sbjct: 95 IMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFA 140
>emb|CAB61832.1| (X98769) Sex-lethal orthologous protein [Megaselia scalaris]
Length = 167
Score = 36.2 bits (82), Expect = 0.083
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+ + +TGY GY V++G +A AI ++NG + K I V +A
Sbjct: 95 IMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFA 140
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 36.2 bits (82), Expect = 0.083
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 24 TGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
TG GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 40 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79
>emb|CAC42817.1| (AJ299078) Poly(A)-binding protein [Gorilla gorilla]
emb|CAC42818.1| (AJ299080) Poly(A)-binding protein [Hylobates lar]
emb|CAC42822.1| (AJ299079) Poly(A)-binding protein [Pongo pygmaeus]
emb|CAC42823.1| (AJ299077) poly(A)-binding protein [Pan troglodytes]
emb|CAC42826.1| (AJ278963) Poly(A)-binding protein [Homo sapiens]
Length = 382
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 18 VRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHV 134
+ G GKG+ +V + FEEA A+ MNG + +K +HV
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
>ref|NP_011471.1| component of the cleavage and polyadenylation factor CF I involved
in pre-mRNA 3'-end processing; Rna15p [Saccharomyces
cerevisiae]
sp|P25299|RN15_YEAST MRNA 3'-END PROCESSING PROTEIN RNA15
pir||B40257 RNA15 protein - yeast (Saccharomyces cerevisiae)
gb|AAA34984.1| (M73462) RNA15 [Saccharomyces cerevisiae]
emb|CAA96746.1| (Z72566) ORF YGL044c [Saccharomyces cerevisiae]
Length = 296
Score = 35.8 bits (81), Expect = 0.11
Identities = 15/43 (34%), Positives = 28/43 (64%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFN 149
+TG KGYA +E+ E + +A+R++NG QL ++ + ++ N
Sbjct: 54 QTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 96
>emb|CAC42812.1| (AJ299083) Poly(A)-binding protein [Callithrix jacchus]
Length = 382
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 18 VRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHV 134
+ G GKG+ +V + FEEA A+ MNG + +K +HV
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
>pir||I51676 ribonucleoprotein - African clawed frog
gb|AAA96943.1| (U17597) ribonucleoprotein [Xenopus laevis]
Length = 389
Score = 35.8 bits (81), Expect = 0.11
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 3 VVAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+V ++ G GY V Y ++A+ AI ++NG +L TKTI V +A
Sbjct: 97 LVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 143
>pir||T34543 hypothetical protein DKFZp434O1221.1 - human (fragment)
emb|CAB59276.1| (AL122118) hypothetical protein [Homo sapiens]
Length = 367
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 18 VRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHV 134
+ G GKG+ +V + FEEA A+ MNG + +K +HV
Sbjct: 320 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 358
>pir||A27441 nucleolin - Chinese hamster
Length = 713
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
G KGYA +E+ FE+A+ A+ S N ++ +TI ++ RG
Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 561
Score = 31.2 bits (69), Expect = 2.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
+ + TG KG+ V++ E+A+ A +M ++ + +DWA +G
Sbjct: 599 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 648
>ref|NP_036881.1| nucleolin [Rattus norvegicus]
sp|P13383|NUCL_RAT NUCLEOLIN (PROTEIN C23)
gb|AAA41732.1| (M55022) nucleolin [Rattus norvegicus]
Length = 713
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
G KGYA +E+ FE+A+ A+ S N ++ +TI ++ RG
Sbjct: 523 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 565
Score = 31.2 bits (69), Expect = 2.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
+ + TG KG+ V++ E+A+ A +M ++ + +DWA +G
Sbjct: 603 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 652
>gb|AAD25780.1|AC006577_16 (AC006577) Similar to gb|U55861 RNA binding protein nucleolysin
(TIAR) from Mus musculus and contains several PF|00076
RNA recognition motif domains. ESTs gb|T21032 and
gb|T44127 come from this gene. [Arabidopsis thaliana]
gb|AAK15558.1|AF348587_1 (AF348587) putative RNA binding protein [Arabidopsis thaliana]
gb|AAK32807.1|AF361639_1 (AF361639) At1g54080/F15I1_16 [Arabidopsis thaliana]
Length = 426
Score = 35.8 bits (81), Expect = 0.11
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 21 RTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
+TG +G+ V + ++AQTAI MNG + ++ I +WA
Sbjct: 184 KTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
>ref|XP_008947.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
ref|XP_049290.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gb|AAH03376.1|AAH03376 (BC003376) ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R) [Homo sapiens]
Length = 326
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
G+ GY V Y ++A+ AI ++NG +L +KTI V +A
Sbjct: 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 30.8 bits (68), Expect = 3.5
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
V + T KG+ V +EEA AI S+NG +L K + V + N+
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
>gb|AAD50313.1|AF176673_1 (AF176673) RNA-binding protein HuA [Gallus gallus]
Length = 326
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
G+ GY V Y ++A+ AI ++NG +L +KTI V +A
Sbjct: 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 30.8 bits (68), Expect = 3.5
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
V + T KG+ V +EEA AI S+NG +L K + V + N+
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
>ref|NP_001410.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R); Embryonic lethal, abnormal vision,
drosophila, homolog-like 1 [Homo sapiens]
sp|Q15717|ELV1_HUMAN ELAV-LIKE PROTEIN 1 (HU-ANTIGEN R) (HUR)
gb|AAB41913.1| (U38175) HuR RNA binding protein [Homo sapiens]
Length = 326
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWA 143
G+ GY V Y ++A+ AI ++NG +L +KTI V +A
Sbjct: 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 30.8 bits (68), Expect = 3.5
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNR 152
V + T KG+ V +EEA AI S+NG +L K + V + N+
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
>sp|P08199|NUCL_MESAU NUCLEOLIN (PROTEIN C23)
Length = 714
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
G KGYA +E+ FE+A+ A+ S N ++ +TI ++ RG
Sbjct: 520 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 562
Score = 31.2 bits (69), Expect = 2.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
+ + TG KG+ V++ E+A+ A +M ++ + +DWA +G
Sbjct: 600 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 649
>pir||JH0148 nucleolin - rat
Length = 712
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
G KGYA +E+ FE+A+ A+ S N ++ +TI ++ RG
Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 564
Score = 31.2 bits (69), Expect = 2.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
+ + TG KG+ V++ E+A+ A +M ++ + +DWA +G
Sbjct: 602 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 651
>gb|AAA36966.1| (M15825) nucleolin, C23 [Cricetulus griseus]
Length = 679
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 27 GYGKGYALVEYGCFEEAQTAIRSMNGTQLLTKTIHVDWAFNRG 155
G KGYA +E+ FE+A+ A+ S N ++ +TI ++ RG
Sbjct: 485 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 527
Score = 31.2 bits (69), Expect = 2.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 6 VAAEVRTGYGKGYALVEYGCF