The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_1_A11_T7.seq Fgr-S_1_A11_T7 0 0 0 1 464
(464 letters)
Database: nr
719,861 sequences; 228,039,490 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK59990.1| (AY037864) KANADI protein [Arabidopsis thali... 38 0.026
gb|AAK59989.1| (AY030192) KANADI protein [Arabidopsis thali... 38 0.026
gb|AAK23527.1| (AE005829) conserved hypothetical protein [C... 30 5.4
gb|AAF59299.1| (AE003842) CG4471 gene product [Drosophila m... 30 5.4
ref|NP_041168.1| Zn-binding protein [ictalurid herpesvirus ... 30 5.4
gb|AAF63500.1|AF239608_1 (AF239608) SP1070 [Drosophila mela... 30 5.4
gb|AAF52472.1| (AE003615) SP1070 gene product [Drosophila m... 30 5.4
gb|AAK04377.1|AE006265_5 (AE006265) ABC transporter permeas... 30 7.0
gb|AAC06263.1| (U66331) pol [Schistosoma mansoni] 30 7.0
pir||H71278 conserved hypothetical protein TP0819 - syphili... 30 9.1
>gb|AAK59990.1| (AY037864) KANADI protein [Arabidopsis thaliana]
Length = 60
Score = 38.1 bits (87), Expect = 0.026
Identities = 17/38 (44%), Positives = 20/38 (51%)
Frame = -1
Query: 446 RSSPMENMEPCRSTGSQVSNHELSSPSLEFTLGRPDWH 333
RSS + + N +PSLEFTLGRPDWH
Sbjct: 21 RSSIQNQEQRSNDQAKRCGNLSCENPSLEFTLGRPDWH 58
>gb|AAK59989.1| (AY030192) KANADI protein [Arabidopsis thaliana]
Length = 403
Score = 38.1 bits (87), Expect = 0.026
Identities = 17/38 (44%), Positives = 20/38 (51%)
Frame = -1
Query: 446 RSSPMENMEPCRSTGSQVSNHELSSPSLEFTLGRPDWH 333
RSS + + N +PSLEFTLGRPDWH
Sbjct: 364 RSSIQNQEQRSNDQAKRCGNLSCENPSLEFTLGRPDWH 401
>gb|AAK23527.1| (AE005829) conserved hypothetical protein [Caulobacter crescentus]
Length = 183
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 439 LQWRTWSPADQPARKCRTTS*AARAWSSRWGDRT 338
L+ R W P+D PA TS +R W S W D T
Sbjct: 17 LRLRCWRPSDAPALSANMTSKVSR-WLSSWPDPT 49
>gb|AAF59299.1| (AE003842) CG4471 gene product [Drosophila melanogaster]
Length = 250
Score = 30.4 bits (67), Expect = 5.4
Identities = 31/95 (32%), Positives = 39/95 (40%), Gaps = 7/95 (7%)
Frame = -1
Query: 386 HELSSPSLEFTLGRPD-----WHGADHD*PLSHQIDKKNLATLIFGPR*YTGTDHLLVEF 222
H SPSL G WHG D D L HQ + G Y HLLV
Sbjct: 95 HHYHSPSLRSPGGAWQQLELAWHGLDRDPELMHQYEASQHCCGYNGADDYKRL-HLLVPA 153
Query: 221 XXXXXXXXSVKKSTATSDI--SLRRNRRSTQHGREKLYIYRI 102
+ S +L R++R QH R+KLY++ I
Sbjct: 154 SCYQAAVNDTAQQIYPSGCLETLNRSQRYIQH-RDKLYMWAI 194
>ref|NP_041168.1| Zn-binding protein [ictalurid herpesvirus 1]
sp|Q00167|VG78_HSVI1 HYPOTHETICAL GENE 78 ZINC-BINDING PROTEIN
pir||ZBBEI4 44.1K zinc-binding protein - ictalurid herpesvirus 1 (strain auburn
1)
gb|AAA88180.1| (M75136) Zn-binding protein [ictalurid herpesvirus 1]
Length = 400
Score = 30.4 bits (67), Expect = 5.4
Identities = 20/47 (42%), Positives = 25/47 (52%)
Frame = -3
Query: 405 RLASVEPRAEQPEPGVHAGETGLAWRGS*LAIESSDRQEKPSNANFR 265
R A +PR QP P VH +TG+ L +ESS R + S NFR
Sbjct: 13 RRAVAQPRTRQPPPKVHREDTGIV---PGLRVESSVRPD--SITNFR 54
>gb|AAF63500.1|AF239608_1 (AF239608) SP1070 [Drosophila melanogaster]
Length = 1551
Score = 30.4 bits (67), Expect = 5.4
Identities = 31/105 (29%), Positives = 41/105 (38%), Gaps = 3/105 (2%)
Frame = +2
Query: 146 SYSGGAICLKLPLISSRKRTDLGPGQTQLKDDQYRC---TILDRKLALLGFSCRSDDSMA 316
S +G C K P+I+ R GPG D + RC D + L CRS
Sbjct: 1131 SEAGQLQCSKCPVIAGRPGVTAGPGARSAADCKERCPAGKYFDAETGL----CRS-CGHG 1185
Query: 317 SHDPRHASPVSPA*TPGSGCSARGSTLASRLICRAPCSPLEKTCPGGR 460
+ P S G G + R + SR CR CS ++ GR
Sbjct: 1186 FYQPNEGS--FSCELCGLGQTTRSTEATSRKECRDECSSGQQLGADGR 1231
>gb|AAF52472.1| (AE003615) SP1070 gene product [Drosophila melanogaster]
Length = 3396
Score = 30.4 bits (67), Expect = 5.4
Identities = 31/105 (29%), Positives = 41/105 (38%), Gaps = 3/105 (2%)
Frame = +2
Query: 146 SYSGGAICLKLPLISSRKRTDLGPGQTQLKDDQYRC---TILDRKLALLGFSCRSDDSMA 316
S +G C K P+I+ R GPG D + RC D + L CRS
Sbjct: 2972 SEAGQLQCSKCPVIAGRPGVTAGPGARSAADCKERCPAGKYFDAETGL----CRS-CGHG 3026
Query: 317 SHDPRHASPVSPA*TPGSGCSARGSTLASRLICRAPCSPLEKTCPGGR 460
+ P S G G + R + SR CR CS ++ GR
Sbjct: 3027 FYQPNEGS--FSCELCGLGQTTRSTEATSRKECRDECSSGQQLGADGR 3072
>gb|AAK04377.1|AE006265_5 (AE006265) ABC transporter permease protein [Lactococcus lactis
subsp. lactis]
Length = 266
Score = 30.0 bits (66), Expect = 7.0
Identities = 21/64 (32%), Positives = 34/64 (52%)
Frame = +1
Query: 103 IRYIYSFSRPCWVLLLFRRSDMSEVAVDFFTEADGLGAGANSTKR*SVPVYYLGPKISVA 282
I +Y F R +VL++F S + + T ADG+ G K+ VPV+ LG +S++
Sbjct: 107 INAVYIFFR--FVLIIFM-STILTLTTPPLTLADGIEKGLGPLKKIKVPVHELGLMLSIS 163
Query: 283 RFFL 294
F+
Sbjct: 164 LRFI 167
>gb|AAC06263.1| (U66331) pol [Schistosoma mansoni]
Length = 730
Score = 30.0 bits (66), Expect = 7.0
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = -2
Query: 169 TYRSAGIGEAPSMVGKSYIYTGLISVSLNSRFLSWFLYMFCRPAHACM 26
+YR + PS + +S IY G++ +S+F S + F R H+CM
Sbjct: 304 SYRPVALLSIPSKIMESLIYDGILEYLSSSKFFSPQQHGF-RKGHSCM 350
>pir||H71278 conserved hypothetical protein TP0819 - syphilis spirochete
gb|AAB61269.1| (U93844) Orf310 [Treponema pallidum]
gb|AAC65782.1| (AE001252) conserved hypothetical protein [Treponema pallidum]
Length = 310
Score = 29.6 bits (65), Expect = 9.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 233 KDDQYRCTILDRKLALLGFSCRSDDSMASHDPRHA 337
KD Q RC LD +G++ D S DPR A
Sbjct: 131 KDFQVRCFCLDHTKPCMGYTLEEQDRPGSFDPRAA 165
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,498,517
Number of Sequences: 719861
Number of extensions: 4799575
Number of successful extensions: 395137002801
Number of sequences better than 10.0: 268722324
Number of HSP's better than 10.0 without gapping: 11315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11564
length of database: 228,039,490
effective HSP length: 108
effective length of database: 150,294,502
effective search space used: 6913547092
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)