The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_1_B02_T7.seq Fgr-S_1_B02_T7 0 0 0 1 239
(239 letters)
Database: nr
719,861 sequences; 228,039,490 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||S32578 ribosomal protein L17.1, cytosolic - barley 34 0.32
sp|P49606|CYAA_USTMA ADENYLATE CYCLASE (ATP PYROPHOSPHATE-L... 33 0.54
sp|P35266|R171_HORVU 60S RIBOSOMAL PROTEIN L17-1 >gi|19102|... 32 1.2
pir||S26295 transcription factor, CCAAT-binding - chicken >... 30 6.0
sp|P57485|GSH1_BUCAI GLUTAMATE--CYSTEINE LIGASE (GAMMA-GLUT... 29 7.8
gb|AAG49551.1|AF264022_1 (AF264022) ribosomal protein L17-1... 29 7.8
>pir||S32578 ribosomal protein L17.1, cytosolic - barley
Length = 170
Score = 33.9 bits (76), Expect = 0.32
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 20 EEPVKKEAESQIARKA 67
EEPVKKEAESQIARKA
Sbjct: 155 EEPVKKEAESQIARKA 170
>sp|P49606|CYAA_USTMA ADENYLATE CYCLASE (ATP PYROPHOSPHATE-LYASE) (ADENYLYL CYCLASE)
pir||A55481 adenylate cyclase (EC 4.6.1.1) uac1 - smut fungus (Ustilago maydis)
gb|AAA57469.1| (L33918) uac1 [Ustilago maydis]
Length = 2493
Score = 33.1 bits (74), Expect = 0.54
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = -1
Query: 206 HQKVSQSMS*QYLDDR*QAKNFDSARPDATNCSNE*ADRLCRASFSRPSWQSGIQPPSSP 27
H+ +S QY D +F S++PD T S+ + RL A++SRP ++ P +P
Sbjct: 52 HRAYPPPLSQQYDDT--STNSFHSSQPDITASSSTLSSRLVSANYSRPRFEHAHTQPPTP 109
>sp|P35266|R171_HORVU 60S RIBOSOMAL PROTEIN L17-1
emb|CAA44598.1| (X62724) ribosomal protein L17-1 [Hordeum vulgare]
Length = 170
Score = 32.0 bits (71), Expect = 1.2
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 20 EEPVKKEAESQIARKA 67
EEPVKKEAES IARKA
Sbjct: 155 EEPVKKEAESHIARKA 170
>pir||S26295 transcription factor, CCAAT-binding - chicken
emb|CAA47320.1| (X66844) CCAAT/Enhancer binding protein [Gallus gallus]
Length = 324
Score = 29.6 bits (65), Expect = 6.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 160 DNRPKISTQPDQMLQTALTNRQIGYVELPSLGLPGNLGFSL 38
D+RP +S+ LQT L GY E PS P G L
Sbjct: 10 DSRPPMSSGQHHQLQTPLPGSAYGYREAPSAAAPAAGGAEL 50
>sp|P57485|GSH1_BUCAI GLUTAMATE--CYSTEINE LIGASE (GAMMA-GLUTAMYLCYSTEINE SYNTHETASE)
(GAMMA-ECS) (GCS)
dbj|BAB13108.1| (AP001119) glutamate-cysteine ligase [Buchnera sp. APS]
Length = 518
Score = 29.3 bits (64), Expect = 7.8
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 163 TDNRPKISTQPDQMLQTALTNRQIGYVELPSL 68
T RPK T+ + L AL NR I YVE+ SL
Sbjct: 302 TQIRPKRKTKDGESLLEALKNRGIEYVEIRSL 333
>gb|AAG49551.1|AF264022_1 (AF264022) ribosomal protein L17-1 [Poa secunda]
Length = 171
Score = 29.3 bits (64), Expect = 7.8
Identities = 16/16 (100%), Positives = 16/16 (100%), Gaps = 1/16 (6%)
Frame = +2
Query: 20 EEPVKKEAESQIA-RKA 67
EEPVKKEAESQIA RKA
Sbjct: 155 EEPVKKEAESQIAPRKA 171
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,381,790
Number of Sequences: 719861
Number of extensions: 1513127
Number of successful extensions: 3298
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3298
length of database: 228,039,490
effective HSP length: 55
effective length of database: 188,447,135
effective search space used: 4522731240
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)