The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_1_B05_T7.seq Fgr-S_1_B05_T7 0 0 0 1 266
(254 letters)
Database: nr
719,861 sequences; 228,039,490 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD20411.1| (AC007019) putative shikimate kinase precurs... 60 4e-09
pir||T09370 shikimate kinase homolog F23K16.170 - Arabidops... 54 2e-07
sp|Q00497|AROK_LYCES SHIKIMATE KINASE PRECURSOR >gi|100253|... 47 3e-05
dbj|BAB01237.1| (AB016889) contains similarity to shikimate... 39 0.007
emb|CAB70104.1| (AL132949) contains similarity to Pfam doma... 31 2.0
emb|CAB52456.1| (AJ007510) hypothetical protein [Bacillus c... 30 3.4
dbj|BAB01716.1| (AB023045) 4-coumarate:CoA ligase 2 [Arabid... 30 4.5
sp|Q9S725|4CL2_ARATH 4-COUMARATE--COA LIGASE 2 (4CL 2) (4-C... 30 4.5
pir||T21569 hypothetical protein F30A10.3 - Caenorhabditis ... 29 7.7
>gb|AAD20411.1| (AC007019) putative shikimate kinase precursor [Arabidopsis
thaliana]
Length = 292
Score = 60.1 bits (144), Expect = 4e-09
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = -2
Query: 232 AFTKLSVLAEQRGDAYAYADVRVSFEELAAKKGHDDVSQLTPTDIAVEALQKIKNFI 62
AF +LS + ++RG+AY A+ RVS E +AAK+G+ +VS LTPT+IA+E Q + +
Sbjct: 234 AFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEVSQVLSQLL 290
>pir||T09370 shikimate kinase homolog F23K16.170 - Arabidopsis thaliana
emb|CAB44689.1| (AL078620) shikimate kinase-like protein [Arabidopsis thaliana]
emb|CAB80617.1| (AL161595) shikimate kinase-like protein [Arabidopsis thaliana]
Length = 305
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/66 (36%), Positives = 41/66 (61%)
Frame = -2
Query: 232 AFTKLSVLAEQRGDAYAYADVRVSFEELAAKKGHDDVSQLTPTDIAVEALQKIKNFITEH 53
A +LS + + RG+AY A RVS E + K G+ VS LTP +IA+EA +++++++ +
Sbjct: 237 ALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 296
Query: 52 SMASGP 35
+ P
Sbjct: 297 DGMARP 302
>sp|Q00497|AROK_LYCES SHIKIMATE KINASE PRECURSOR
pir||S21584 shikimate kinase (EC 2.7.1.71) precursor - tomato
emb|CAA45121.1| (X63560) shikimate kinase precursor [Lycopersicon esculentum]
Length = 300
Score = 47.4 bits (111), Expect = 3e-05
Identities = 24/54 (44%), Positives = 35/54 (64%)
Frame = -2
Query: 223 KLSVLAEQRGDAYAYADVRVSFEELAAKKGHDDVSQLTPTDIAVEALQKIKNFI 62
+L+ L E RG+ YA A RVS E +A K+ DV +TP +I +E L +I+NF+
Sbjct: 239 RLTTLMETRGENYANASARVSLENIALKR-EKDVCHITPAEITLEVLIQIENFL 291
>dbj|BAB01237.1| (AB016889) contains similarity to shikimate kinase
precursor~gene_id:MDJ14.24 [Arabidopsis thaliana]
Length = 280
Score = 39.3 bits (90), Expect = 0.007
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -2
Query: 235 QAFTKLSVLAEQRGDAYAYADVRVSFEELAAKKGHDDVSQLTPTDIAVEALQKIKNFITE 56
+ F L E+ Y ADV +S E++A K +D+ +T DIA+E L++I+
Sbjct: 210 ELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSEDIALEILKEIEKLTRV 269
Query: 55 HSM---ASGPF 32
M AS PF
Sbjct: 270 KKMMEEASRPF 280
>emb|CAB70104.1| (AL132949) contains similarity to Pfam domain: PF01585 (G-patch
domain), Score=59.1, E-value=3e-14, N=1; PF01728 (FtsJ
cell division protein), Score=-30.9, E-value=4.7e-05,
N=1~cDNA EST yk281f8.5 comes from this gene~cDNA EST
yk342h8.5 comes from this >
Length = 955
Score = 31.2 bits (69), Expect = 2.0
Identities = 17/41 (41%), Positives = 23/41 (55%)
Frame = -2
Query: 172 VRVSFEELAAKKGHDDVSQLTPTDIAVEALQKIKNFITEHS 50
V +EL KK HDDV+ L P D+ +EA Q + I H+
Sbjct: 507 VNRKLDELKNKKSHDDVTDLMPLDV-IEADQIFMDEIIRHN 546
>emb|CAB52456.1| (AJ007510) hypothetical protein [Bacillus cereus]
Length = 425
Score = 30.4 bits (67), Expect = 3.4
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 15/62 (24%)
Frame = -2
Query: 229 FTKLSVLAEQRGDAYAYADVRVSFE-------------ELAAKKGHDDVSQLTPTDIAVE 89
+T L LAE+ G+ Y + V + F ELA + G +D P D+AV+
Sbjct: 125 YTALRQLAEETGETYLFEAVILPFTYASKTERAEIKRLELAIQMGTEDRQAYDPVDLAVD 184
Query: 88 ALQK--IKNFITEHSMA 44
Q + +TE+ A
Sbjct: 185 IYQTVVVDKLMTENDYA 201
>dbj|BAB01716.1| (AB023045) 4-coumarate:CoA ligase 2 [Arabidopsis thaliana]
Length = 556
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -2
Query: 196 GDAYAYADVRVSFEELAA------KKGHDDVSQLTPTDIAVEALQKIKNFITEHSMASGP 35
G+ Y YADV V+ +LAA K HD V L P V +FI + ++ P
Sbjct: 61 GEVYTYADVHVTSRKLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANP 120
Query: 34 F 32
F
Sbjct: 121 F 121
>sp|Q9S725|4CL2_ARATH 4-COUMARATE--COA LIGASE 2 (4CL 2) (4-COUMAROYL-COA SYNTHASE 2)
gb|AAD47192.1|AF106085_1 (AF106085) 4-coumarate:CoA ligase 2 [Arabidopsis thaliana]
gb|AAD47193.1|AF106086_1 (AF106086) 4-coumarate:CoA ligase 2 [Arabidopsis thaliana]
Length = 556
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -2
Query: 196 GDAYAYADVRVSFEELAA------KKGHDDVSQLTPTDIAVEALQKIKNFITEHSMASGP 35
G+ Y YADV V+ +LAA K HD V L P V +FI + ++ P
Sbjct: 61 GEVYTYADVHVTSRKLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANP 120
Query: 34 F 32
F
Sbjct: 121 F 121
>pir||T21569 hypothetical protein F30A10.3 - Caenorhabditis elegans
emb|CAB03023.1| (Z81072) cDNA EST EMBL:Z14598 comes from this gene [Caenorhabditis
elegans]
Length = 323
Score = 29.3 bits (64), Expect = 7.7
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -2
Query: 250 GRGRG----QAFTKL-SVLAEQRGDAYAYADVRVSFEELAAKKGHDDVSQLTPTDIAVEA 86
GR R Q +KL S+LAE G + A + ++F+ AA DD ++ D A
Sbjct: 226 GRSRAARIRQKLSKLRSLLAEFEGYRFFSASILIAFDAEAADSSSDDAVKVCIIDFA--- 282
Query: 85 LQKIKNFITEHSMASGPFDDL 23
HS SG F+DL
Sbjct: 283 ----------HSTFSGFFEDL 293
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,240,263
Number of Sequences: 719861
Number of extensions: 1872599
Number of successful extensions: 4802
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4800
length of database: 228,039,490
effective HSP length: 60
effective length of database: 184,847,830
effective search space used: 4436347920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)