Score E
Sequences producing significant alignments: (bits) Value
sp|Q43704|MCM3_MAIZE DNA REPLICATION LICENSING FACTOR MCM3 ... 144 3e-34
gb|AAD48086.1|AF073330_1 (AF073330) replication origin acti... 143 7e-34
gb|AAD48087.1|AF073331_1 (AF073331) replication origin acti... 143 7e-34
emb|CAA10166.1| (AJ012750) MCM3 protein [Pisum sativum] 61 4e-09
gb|AAH03509.1|AAH03509 (BC003509) Unknown (protein for IMAG... 44 4e-04
dbj|BAA07267.1| (D38073) hRlf beta subunit (p102 protein) [... 44 4e-04
sp|P25205|MCM3_HUMAN DNA REPLICATION LICENSING FACTOR MCM3 ... 44 4e-04
ref|NP_002379.2| minichromosome maintenance deficient (S. c... 44 4e-04
sp|P25206|MCM3_MOUSE DNA REPLICATION LICENSING FACTOR MCM3 ... 42 0.002
pir||S22804 replication licensing factor MCM3 - mouse (frag... 42 0.002
pir||S17100 P1.m protein - mouse (fragment) >gi|53551|emb|C... 42 0.002
gb|AAD45519.1|AF159625_1 (AF159625) arabinosidase [Bacillus... 32 1.7
ref|NP_071733.1| chromosome 11 open reading frame 24 [Homo ... 32 2.8
pir||A45023 lamin B2 - human (fragment) >gi|1054874|gb|AAA8... 31 3.7
sp|Q03252|LAM2_HUMAN LAMIN B2 31 3.7
ref|NP_073473.1| 88L protein [Yaba-like disease virus] >gi|... 31 4.9
dbj|BAB30588.1| (AK017085) putative [Mus musculus] 31 4.9
gb|AAF53430.1| (AE003646) l(2)35Bd gene product [Drosophila... 30 6.3
gb|AAG50948.1|AC079284_23 (AC079284) hypothetical protein [... 30 6.3
gb|AAF44909.1|AE003406_114 (AE003416) symbol=l(2)35Bd; syno... 30 6.3
gb|AAD50978.1|AF170484_1 (AF170484) sialic acid binding Ig-... 30 8.3
>sp|Q43704|MCM3_MAIZE DNA REPLICATION LICENSING FACTOR MCM3 HOMOLOG (REPLICATION ORIGIN
ACTIVATOR) (ROA PROTEIN)
pir||S52247 replication licensing factor MCM3 - maize (fragment)
emb|CAA82556.1| (Z29368) ROA protein [Zea mays]
Length = 600
Score = 144 bits (363), Expect = 3e-34
Identities = 71/95 (74%), Positives = 82/95 (85%)
Frame = -2
Query: 452 DVHGSSGNDPMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVN 273
D HGSSGNDPMDVD GS NDQ+VS++R+EAFEA+LGQHVLANH+DQMSIDE+EQ VN
Sbjct: 510 DGHGSSGNDPMDVDVGS----NDQNVSAERIEAFEALLGQHVLANHIDQMSIDEIEQMVN 565
Query: 272 RDAAVAYTRGQVEFILERMQDANRIMTRDDIVRII 168
R++ YTR QVEFILERMQDANR+M RD +VRII
Sbjct: 566 RESTAPYTRSQVEFILERMQDANRVMIRDGVVRII 600
>gb|AAD48086.1|AF073330_1 (AF073330) replication origin activator 2 [Zea mays]
Length = 768
Score = 143 bits (360), Expect = 7e-34
Identities = 70/95 (73%), Positives = 82/95 (85%)
Frame = -2
Query: 452 DVHGSSGNDPMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVN 273
D HGSSGNDPMDVD GS NDQ+VS++R+EAFEA+LGQHVLANH+DQMSID++EQ VN
Sbjct: 678 DGHGSSGNDPMDVDVGS----NDQNVSAERIEAFEALLGQHVLANHIDQMSIDDIEQMVN 733
Query: 272 RDAAVAYTRGQVEFILERMQDANRIMTRDDIVRII 168
R++ YTR QVEFILERMQDANR+M RD +VRII
Sbjct: 734 RESTAPYTRSQVEFILERMQDANRVMIRDGVVRII 768
>gb|AAD48087.1|AF073331_1 (AF073331) replication origin activator 3 [Zea mays]
Length = 768
Score = 143 bits (360), Expect = 7e-34
Identities = 70/95 (73%), Positives = 82/95 (85%)
Frame = -2
Query: 452 DVHGSSGNDPMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVN 273
D HGSSGNDPMDVD GS NDQ+VS++R++AFEA+LGQHVLANH+DQMSIDE+EQ VN
Sbjct: 678 DGHGSSGNDPMDVDVGS----NDQNVSAERIQAFEALLGQHVLANHIDQMSIDEIEQMVN 733
Query: 272 RDAAVAYTRGQVEFILERMQDANRIMTRDDIVRII 168
R++ YTR QVEFILERMQDANR+M RD +VRII
Sbjct: 734 RESTAPYTRSQVEFILERMQDANRVMIRDGVVRII 768
>emb|CAA10166.1| (AJ012750) MCM3 protein [Pisum sativum]
Length = 656
Score = 60.8 bits (146), Expect = 4e-09
Identities = 31/90 (34%), Positives = 56/90 (61%)
Frame = -2
Query: 437 SGNDPMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAV 258
S ++ M++D S A ++ +R+EAF ++ GQH+ AN +DQ+SI ++E +NR A
Sbjct: 567 STSEAMELDDTSA-APPAVGLTPERIEAFNSLFGQHMRANPLDQISIADIEDVINRGADS 625
Query: 257 AYTRGQVEFILERMQDANRIMTRDDIVRII 168
Y+ + +LE++Q+ NR+M +V +I
Sbjct: 626 TYSSADILLLLEKLQEDNRLMIVAGMVHMI 655
>gb|AAH03509.1|AAH03509 (BC003509) Unknown (protein for IMAGE:3610786) [Homo sapiens]
Length = 825
Score = 44.3 bits (103), Expect = 4e-04
Identities = 20/86 (23%), Positives = 44/86 (50%)
Frame = -2
Query: 425 PMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVAYTR 246
P D S ++S R++AF+ L H + ++ + +++NRD+ ++
Sbjct: 740 PKTADSQETKESQKVELSESRLKAFKVALLDVFREAHAQSIGMNRLTESINRDSEEPFSS 799
Query: 245 GQVEFILERMQDANRIMTRDDIVRII 168
+++ L +MQD N++M + I+ +I
Sbjct: 800 VEIQAALSKMQDDNQVMVSEGIIFLI 825
>dbj|BAA07267.1| (D38073) hRlf beta subunit (p102 protein) [Homo sapiens]
Length = 808
Score = 44.3 bits (103), Expect = 4e-04
Identities = 20/86 (23%), Positives = 44/86 (50%)
Frame = -2
Query: 425 PMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVAYTR 246
P D S ++S R++AF+ L H + ++ + +++NRD+ ++
Sbjct: 723 PKTADSQETKESQKVELSESRLKAFKVALLDVFREAHAQSIGMNRLTESINRDSEEPFSS 782
Query: 245 GQVEFILERMQDANRIMTRDDIVRII 168
+++ L +MQD N++M + I+ +I
Sbjct: 783 VEIQAALSKMQDDNQVMVSEGIIFLI 808
>sp|P25205|MCM3_HUMAN DNA REPLICATION LICENSING FACTOR MCM3 (DNA POLYMERASE ALPHA
HOLOENZYME-ASSOCIATED PROTEIN P1) (RLF BETA SUBUNIT)
(P102 PROTEIN) (P1-MCM3)
pir||S62594 replication licensing factor MCM3 - human
Length = 808
Score = 44.3 bits (103), Expect = 4e-04
Identities = 20/86 (23%), Positives = 44/86 (50%)
Frame = -2
Query: 425 PMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVAYTR 246
P D S ++S R++AF+ L H + ++ + +++NRD+ ++
Sbjct: 723 PKTADSQETKESQKVELSESRLKAFKVALLDVFREAHAQSIGMNRLTESINRDSEEPFSS 782
Query: 245 GQVEFILERMQDANRIMTRDDIVRII 168
+++ L +MQD N++M + I+ +I
Sbjct: 783 VEIQAALSKMQDDNQVMVSEGIIFLI 808
>ref|NP_002379.2| minichromosome maintenance deficient (S. cerevisiae) 3;
Minichromosome maintenance, S. cerevisiae, homolog of, 3
[Homo sapiens]
ref|XP_004096.3| 54216 [Homo sapiens]
ref|XP_037069.1| minichromosome maintenance deficient (S. cerevisiae) 3 [Homo
sapiens]
ref|XP_037070.1| minichromosome maintenance deficient (S. cerevisiae) 3 [Homo
sapiens]
ref|XP_037068.1| minichromosome maintenance deficient (S. cerevisiae) 3 [Homo
sapiens]
emb|CAA44078.2| (X62153) P1.h protein [Homo sapiens]
emb|CAB75298.1| (AL034343) dJ108C2.1 (minichromosome maintenance deficient (S.
cerevisiae) 3 (DNA replication licensing factor, DNA
polymerase alpha holoenzyme-associated protein P1, RLF
beta subunit)) [Homo sapiens]
gb|AAH01626.1|AAH01626 (BC001626) minichromosome maintenance deficient (S. cerevisiae) 3
[Homo sapiens]
Length = 808
Score = 44.3 bits (103), Expect = 4e-04
Identities = 20/86 (23%), Positives = 44/86 (50%)
Frame = -2
Query: 425 PMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVAYTR 246
P D S ++S R++AF+ L H + ++ + +++NRD+ ++
Sbjct: 723 PKTADSQETKESQKVELSESRLKAFKVALLDVFREAHAQSIGMNRLTESINRDSEEPFSS 782
Query: 245 GQVEFILERMQDANRIMTRDDIVRII 168
+++ L +MQD N++M + I+ +I
Sbjct: 783 VEIQAALSKMQDDNQVMVSEGIIFLI 808
>sp|P25206|MCM3_MOUSE DNA REPLICATION LICENSING FACTOR MCM3 (DNA POLYMERASE ALPHA
HOLOENZYME-ASSOCIATED PROTEIN P1) (P1-MCM3)
Length = 812
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/94 (26%), Positives = 48/94 (50%), Gaps = 2/94 (2%)
Frame = -2
Query: 449 VHGSSGNDPMDVDGGSGNASNDQDV--SSQRMEAFEAILGQHVLANHVDQMSIDEVEQTV 276
VH +D + S + Q V S R++AF+A L + H + + + +++
Sbjct: 717 VHTPKTDDSQEKTDDSQETQDSQKVELSEPRLKAFKAALLEVFQEAHEQSVGMLHLTESI 776
Query: 275 NRDAAVAYTRGQVEFILERMQDANRIMTRDDIVRII 168
NR+ ++ +++ L RMQD N++M + IV +I
Sbjct: 777 NRNREEPFSSEEIQACLSRMQDDNQVMVSEGIVFLI 812
>pir||S22804 replication licensing factor MCM3 - mouse (fragment)
Length = 795
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/94 (26%), Positives = 48/94 (50%), Gaps = 2/94 (2%)
Frame = -2
Query: 449 VHGSSGNDPMDVDGGSGNASNDQDV--SSQRMEAFEAILGQHVLANHVDQMSIDEVEQTV 276
VH +D + S + Q V S R++AF+A L + H + + + +++
Sbjct: 700 VHTPKTDDSQEKTDDSQETQDSQKVELSEPRLKAFKAALLEVFQEAHEQSVGMLHLTESI 759
Query: 275 NRDAAVAYTRGQVEFILERMQDANRIMTRDDIVRII 168
NR+ ++ +++ L RMQD N++M + IV +I
Sbjct: 760 NRNREEPFSSEEIQACLSRMQDDNQVMVSEGIVFLI 795
>pir||S17100 P1.m protein - mouse (fragment)
emb|CAA44079.1| (X62154) P1.m protein [Mus musculus]
Length = 795
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/94 (26%), Positives = 48/94 (50%), Gaps = 2/94 (2%)
Frame = -2
Query: 449 VHGSSGNDPMDVDGGSGNASNDQDV--SSQRMEAFEAILGQHVLANHVDQMSIDEVEQTV 276
VH +D + S + Q V S R++AF+A L + H + + + +++
Sbjct: 700 VHTPKTDDSQEKTDDSQETQDSQKVELSEPRLKAFKAALLEVFQEAHEQSVGMLHLTESI 759
Query: 275 NRDAAVAYTRGQVEFILERMQDANRIMTRDDIVRII 168
NR+ ++ +++ L RMQD N++M + IV +I
Sbjct: 760 NRNREEPFSSEEIQACLSRMQDDNQVMVSEGIVFLI 795
>gb|AAD45519.1|AF159625_1 (AF159625) arabinosidase [Bacillus stearothermophilus]
Length = 220
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 359 EAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVAYTRGQ 240
+A A L H+ NH D++ + + QTVN AV TRG+
Sbjct: 36 DALVAALHFHIFHNHCDRVRMANIAQTVNVLQAVILTRGE 75
>ref|NP_071733.1| chromosome 11 open reading frame 24 [Homo sapiens]
gb|AAG36936.1|AF264781_1 (AF264781) DM4E3 [Homo sapiens]
Length = 449
Score = 31.6 bits (70), Expect = 2.8
Identities = 21/64 (32%), Positives = 31/64 (47%)
Frame = +1
Query: 259 TAASLLTVCSTSSMDI*STWFASTCCPRIASNASILCEETS*SFDALPEPPSTSIGSLPE 438
TAAS +TV S++ S+ ++ P A+++ T + ALP P STS G P
Sbjct: 121 TAASSMTVASSAPTTAASSTTVASIAPTTAASSMTAASSTPMTL-ALPAPTSTSTGRTPS 179
Query: 439 LPCT 450
T
Sbjct: 180 TTAT 183
>pir||A45023 lamin B2 - human (fragment)
gb|AAA80979.1| (M94362) lamin B2 [Homo sapiens]
Length = 515
Score = 31.2 bits (69), Expect = 3.7
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -1
Query: 498 SSGRPGRWRCKRWQCRCAWKLWQRP-NGCGWR 406
++GR GR + KRW+ R W+ +RP +G GW+
Sbjct: 323 ATGRLGRSKRKRWRWRSPWQRPKRPGHGHGWQ 354
>sp|Q03252|LAM2_HUMAN LAMIN B2
Length = 599
Score = 31.2 bits (69), Expect = 3.7
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -1
Query: 498 SSGRPGRWRCKRWQCRCAWKLWQRP-NGCGWR 406
++GR GR + KRW+ R W+ +RP +G GW+
Sbjct: 407 ATGRLGRSKRKRWRWRSPWQRPKRPGHGHGWQ 438
>ref|NP_073473.1| 88L protein [Yaba-like disease virus]
emb|CAC21326.1| (AJ293568) 88L protein [Yaba-like disease virus]
Length = 631
Score = 30.8 bits (68), Expect = 4.9
Identities = 21/69 (30%), Positives = 38/69 (54%), Gaps = 1/69 (1%)
Frame = +2
Query: 23 INLNLTDKNQD-TKYINRQSLSRNSDKAENRSGQRMPQSASPTSIHVLTR*CEQCRPLSL 199
INL L +D YIN++S S N+ K ++G+ + ++P I +L+ ++ +
Sbjct: 312 INLELNTLYKDFVNYINQKSFSDNAIKLF-KAGKGLTGDSNPLDISLLSELKQKSCKFTE 370
Query: 200 SCLHLASSPG 229
CL + +SPG
Sbjct: 371 VCLKILASPG 380
>dbj|BAB30588.1| (AK017085) putative [Mus musculus]
Length = 167
Score = 30.8 bits (68), Expect = 4.9
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -1
Query: 495 SGRPGRWRCKRWQCRC 448
+G PGRW C WQCRC
Sbjct: 45 TGNPGRWCC--WQCRC 58
>gb|AAF53430.1| (AE003646) l(2)35Bd gene product [Drosophila melanogaster]
Length = 410
Score = 30.4 bits (67), Expect = 6.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Frame = -2
Query: 458 NADVHGS-SGNDPMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQM 303
N + H S S + D GG GN S D EA HV+A+H +++
Sbjct: 40 NQEPHVSKSPREYYDEPGGKGNGSGADDQDEPETEAASGAANTHVVAHHYNEL 92
>gb|AAG50948.1|AC079284_23 (AC079284) hypothetical protein [Arabidopsis thaliana]
Length = 520
Score = 30.4 bits (67), Expect = 6.3
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +3
Query: 228 DELYLASSVSNSCISVDCLLNFINGHLINMVCQHMLS 338
+EL+L +S+SC+ VD L + LIN C L+
Sbjct: 142 EELFLLKKLSDSCLVVDALEPSVREELINNFCSRELT 178
>gb|AAF44909.1|AE003406_114 (AE003416) symbol=l(2)35Bd; synonym=BG:DS00929.5;
cDNA=method:''sim4'', score:''990.0'', desc:''LD09819 LD
Drosophila melanogaster embryo BlueScript Drosophila
melanogaster cDNA clone, full length mRNA sequence from
BDGP''; cDNA=method:''sim4'', score:>
Length = 427
Score = 30.4 bits (67), Expect = 6.3
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Frame = -2
Query: 458 NADVHGS-SGNDPMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQM 303
N + H S S + D GG GN S D EA HV+A+H +++
Sbjct: 40 NQEPHVSKSPREYYDEPGGKGNGSGADDQDEPETEAASGAANTHVVAHHYNEL 92
>gb|AAD50978.1|AF170484_1 (AF170484) sialic acid binding Ig-like lectin-5; siglec-5 [Homo
sapiens]
Length = 551
Score = 30.0 bits (66), Expect = 8.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 477 WRCKRWQCRCAWKLWQRPNGCGWRLRQ 397
W + CRC+++ W P+ C WRL +
Sbjct: 344 WEAEGLHCRCSFRAWPAPSLC-WRLEE 369
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,805,457
Number of Sequences: 719861
Number of extensions: 4433298
Number of successful extensions: 395137005678
Number of sequences better than 10.0: 268722346
Number of HSP's better than 10.0 without gapping: 13823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14437
length of database: 228,039,490
effective HSP length: 110
effective length of database: 148,854,780
effective search space used: 8187012900
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)