Score E
Sequences producing significant alignments: (bits) Value
gb|AAK70908.1|AC087551_7 (AC087551) cytoplasmic ribosomal p... 164 2e-40
gb|AAF26138.1|AC011620_14 (AC011620) putative 60S ribosomal... 149 6e-36
sp|P42791|RL18_ARATH 60S RIBOSOMAL PROTEIN L18 >gi|606970|g... 149 6e-36
sp|O65729|RL18_CICAR 60S RIBOSOMAL PROTEIN L18 >gi|3021348|... 140 2e-33
gb|AAF50596.1| (AE003559) CG8615 gene product [Drosophila m... 129 4e-30
pir||T00427 ribosomal protein L18, cytosolic - Arabidopsis ... 127 2e-29
pir||T26939 hypothetical protein Y45F10D.12 - Caenorhabditi... 126 4e-29
ref|NP_112364.1| ribosomal protein L18 [Rattus norvegicus] ... 125 5e-29
dbj|BAB26043.1| (AK009044) putative [Mus musculus] >gi|1284... 125 5e-29
dbj|BAB24923.1| (AK007263) putative [Mus musculus] 125 5e-29
gb|AAF64457.1| (AF240374) ribosomal protein L18 [Oreochromi... 124 2e-28
ref|XP_009113.2| ribosomal protein L18 [Homo sapiens] 123 3e-28
ref|NP_000970.1| ribosomal protein L18 [Homo sapiens] >gi|1... 123 3e-28
sp|P09897|RLNA_XENLA 60S RIBOSOMAL PROTEIN L14A >gi|71233|p... 123 3e-28
emb|CAA24700.1| (V01439) ribosomal protein L14 [Xenopus lae... 123 3e-28
sp|P02412|RL18_XENLA 60S RIBOSOMAL PROTEIN L18 (L14B) 123 3e-28
emb|CAC36993.1| (AJ306691) Ribosomal protein L18 [Salmo salar] 121 1e-27
pir||R5XL14 ribosomal protein L18.b - African clawed frog >... 120 2e-27
emb|CAA28689.1| (X05025) ribosomal protein L14 [Xenopus lae... 119 5e-27
emb|CAB57235.1| (AJ270208) putative ribosomal protein [Ento... 113 3e-25
ref|NP_014098.1| Ribosomal protein L18B (rp28B); Rpl18bp [S... 113 4e-25
gb|AAK06744.1|AF318897_1 (AF318897) putative ribosomal prot... 112 5e-25
sp|Q10192|RL18_SCHPO 60S RIBOSOMAL PROTEIN L18 >gi|2130477|... 112 5e-25
ref|NP_033103.1| ribosomal protein L18 [Mus musculus] >gi|5... 108 9e-24
emb|CAC14654.1| (AL449144) ribosomal protein L18 [Leishmani... 96 4e-20
sp|P50885|RL18_TRYBB 60S RIBOSOMAL PROTEIN L18 >gi|1185006|... 94 2e-19
sp|P24558|RL18_SALSA 60S RIBOSOMAL PROTEIN L18 >gi|71235|pi... 52 1e-06
emb|CAB97995.1| (AL160493) hypothetical protein LM26.377 [L... 33 0.61
emb|CAB97994.1| (AL160493) probable 60S ribosomal protein l... 33 0.61
ref|NP_003568.1| undifferentiated embryonic cell transcript... 32 1.4
emb|CAA32782.1| (X14634) PYR1-3B multifunctional enzyme (10... 32 1.4
sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DE... 32 1.4
pir||QZDOP3 pyrimidine synthesis protein PYR1-3 - slime mol... 32 1.4
ref|NP_003746.1| eukaryotic translation initiation factor 3... 31 1.8
gb|AAB71866.1| (AF020833) eukaryotic translation initiation... 31 1.8
gb|AAC33527.1| (AF036130) collagen type IX alpha I chain, l... 30 3.9
ref|XP_004151.3| collagen, type IX, alpha 1 [Homo sapiens] 30 3.9
gb|AAC33528.1| (AF036130) collagen type IX alpha I chain, s... 30 3.9
ref|XP_032181.1| KIAA1233 protein [Homo sapiens] 30 3.9
dbj|BAA86547.1| (AB033059) KIAA1233 protein [Homo sapiens] 30 3.9
ref|NP_001842.1| collagen, type IX, alpha 1; Collagen IX, a... 30 3.9
dbj|BAA98165.1| (AB025613) receptor protein kinase-like [Ar... 30 5.2
pir||T38538 probable oxidoreductase - fission yeast (Schizo... 30 5.2
ref|NP_055334.1| zinc finger protein 232 [Homo sapiens] >gi... 30 5.2
pir||S77270 hypothetical protein slr0881 - Synechocystis sp... 30 5.2
emb|CAB53759.1| (AJ132106) SCO-spondin [Bos taurus] 29 6.7
gb|AAK65859.1| (AE007305) Putative histidine utilization re... 29 6.7
gb|AAC33839.1| (U93363) 2-aminomuconic acid semialdehyde de... 29 6.7
pir||H82970 hypothetical protein PA5412 [imported] - Pseudo... 29 8.8
ref|NP_113682.1| Zinc finger protein 275 [Mus musculus] >gi... 29 8.8
emb|CAB66134.1| (AL136399) Zinc finger protein 275 [Mus mus... 29 8.8
emb|CAC34554.1| (Y07600) dehydrin [Pistacia vera] 29 8.8
gb|AAK24060.1| (AE005882) sodium dependent nucleoside trans... 29 8.8
pir||A29789 mucin - sheep (fragment) 29 8.8
emb|CAB61669.1| (AL133213) putative membrane protein. [Stre... 29 8.8
pir||G70879 hypothetical protein Rv2752c - Mycobacterium tu... 29 8.8
dbj|BAB03004.1| (AP001297) gb|AAF34307.1~gene_id:F14O13.5~s... 29 8.8
gb|AAF14221.1|AF108214_1 (AF108214) eukaryotic translation ... 29 8.8
>gb|AAK70908.1|AC087551_7 (AC087551) cytoplasmic ribosomal protein L18 [Oryza sativa]
Length = 188
Score = 164 bits (414), Expect = 2e-40
Identities = 78/82 (95%), Positives = 81/82 (98%)
Frame = +3
Query: 18 QVARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPY 197
+ ARARIVNAGGECLTFDQLALRAPLG+NT+LLRGPKNAREAVRHFGKAPGVPHSHTKPY
Sbjct: 107 ETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPY 166
Query: 198 VRSKGRKFEKARGRRNSRGFKV 263
VRSKGRKFEKARGRRNSRGFKV
Sbjct: 167 VRSKGRKFEKARGRRNSRGFKV 188
>gb|AAF26138.1|AC011620_14 (AC011620) putative 60S ribosomal protein L18 [Arabidopsis
thaliana]
gb|AAK59824.1| (AY037224) AT3g05590/F18C1_14 [Arabidopsis thaliana]
Length = 187
Score = 149 bits (375), Expect = 6e-36
Identities = 70/80 (87%), Positives = 76/80 (94%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
ARARI AGGECLTFDQLALRAPLGQNT+LLRGPKN+REAV+HFG APGVPHSH+KPYVR
Sbjct: 108 ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVR 167
Query: 204 SKGRKFEKARGRRNSRGFKV 263
+KGRKFEKARG+R SRGFKV
Sbjct: 168 AKGRKFEKARGKRKSRGFKV 187
>sp|P42791|RL18_ARATH 60S RIBOSOMAL PROTEIN L18
gb|AAA69928.1| (U15741) cytoplasmic ribosomal protein L18 [Arabidopsis thaliana]
Length = 187
Score = 149 bits (375), Expect = 6e-36
Identities = 70/80 (87%), Positives = 76/80 (94%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
ARARI AGGECLTFDQLALRAPLGQNT+LLRGPKN+REAV+HFG APGVPHSH+KPYVR
Sbjct: 108 ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVR 167
Query: 204 SKGRKFEKARGRRNSRGFKV 263
+KGRKFEKARG+R SRGFKV
Sbjct: 168 AKGRKFEKARGKRKSRGFKV 187
>sp|O65729|RL18_CICAR 60S RIBOSOMAL PROTEIN L18
emb|CAA06246.1| (AJ004961) ribosomal protein L18 [Cicer arietinum]
Length = 183
Score = 140 bits (353), Expect = 2e-33
Identities = 69/82 (84%), Positives = 74/82 (90%)
Frame = +3
Query: 18 QVARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPY 197
+ ARARI AGGECLTFDQLALR PL +T+LLRGPKNAREAV+HFG APGVPHSHTKPY
Sbjct: 103 ETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPY 161
Query: 198 VRSKGRKFEKARGRRNSRGFKV 263
VRSKGRKFEKARGRR SRGF+V
Sbjct: 162 VRSKGRKFEKARGRRKSRGFRV 183
>gb|AAF50596.1| (AE003559) CG8615 gene product [Drosophila melanogaster]
Length = 188
Score = 129 bits (325), Expect = 4e-30
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +3
Query: 18 QVARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPY 197
Q AR RI+ AGGE LTFDQLALR+P G+NTLLL+G + AR A +HFGKAPGVPHSHT+PY
Sbjct: 107 QTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPY 166
Query: 198 VRSKGRKFEKARGRRNSRGFK 260
VRSKGRKFE+ARGRR+S G+K
Sbjct: 167 VRSKGRKFERARGRRSSCGYK 187
>pir||T00427 ribosomal protein L18, cytosolic - Arabidopsis thaliana (fragment)
gb|AAC62853.1| (AC002535) 60S ribosomal protein L18 [Arabidopsis thaliana]
Length = 187
Score = 127 bits (319), Expect = 2e-29
Identities = 63/80 (78%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPL-GQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYV 200
ARARI AGGECLTFDQLAL P +NT+LLRGPKN REAV+HFG APGVPHSHTKPYV
Sbjct: 107 ARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYV 166
Query: 201 RSKGRKFEKARGRRNSRGFKV 263
R G+K E ARGRR SRGFKV
Sbjct: 167 RQTGKKIEIARGRRRSRGFKV 187
>pir||T26939 hypothetical protein Y45F10D.12 - Caenorhabditis elegans
emb|CAA16387.1| (AL021492) contains similarity to Pfam domain: PF00828 (Eukaryotic
ribosomal protein L18), Score=358.0, E-value=3.3e-104,
N=1~cDNA EST EMBL:T00587 comes from this gene; cDNA EST
yk60f4.3 comes from this gene; cDNA EST yk113g7.3 comes
from this gene; cD>
Length = 188
Score = 126 bits (316), Expect = 4e-29
Identities = 58/79 (73%), Positives = 70/79 (88%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
ARARI+ AGGE +T DQLAL++P G+NT+ L+GP++AREA +HFG APGVPHSHTKPYVR
Sbjct: 109 ARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVR 168
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR SR +K
Sbjct: 169 SKGRKFERARGRRASRAYK 187
>ref|NP_112364.1| ribosomal protein L18 [Rattus norvegicus]
sp|P12001|RL18_RAT 60S RIBOSOMAL PROTEIN L18
pir||R5RT81 ribosomal protein L18, cytosolic [validated] - rat
gb|AAA42070.1| (M20156) ribosomal protein L18 [Rattus norvegicus]
Length = 188
Score = 125 bits (315), Expect = 5e-29
Identities = 58/79 (73%), Positives = 67/79 (84%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR+RI+ AGG+ LTFDQLAL +P G+ T+LL GP+ RE RHFGKAPG PHSHTKPYVR
Sbjct: 109 ARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVR 168
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR SRG+K
Sbjct: 169 SKGRKFERARGRRASRGYK 187
>dbj|BAB26043.1| (AK009044) putative [Mus musculus]
dbj|BAB26993.1| (AK010510) putative [Mus musculus]
dbj|BAB28332.1| (AK012580) putative [Mus musculus]
Length = 188
Score = 125 bits (315), Expect = 5e-29
Identities = 58/79 (73%), Positives = 67/79 (84%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR+RI+ AGG+ LTFDQLAL +P G+ T+LL GP+ RE RHFGKAPG PHSHTKPYVR
Sbjct: 109 ARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVR 168
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR SRG+K
Sbjct: 169 SKGRKFERARGRRASRGYK 187
>dbj|BAB24923.1| (AK007263) putative [Mus musculus]
Length = 188
Score = 125 bits (315), Expect = 5e-29
Identities = 58/79 (73%), Positives = 67/79 (84%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR+RI+ AGG+ LTFDQLAL +P G+ T+LL GP+ RE RHFGKAPG PHSHTKPYVR
Sbjct: 109 ARSRILRAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVR 168
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR SRG+K
Sbjct: 169 SKGRKFERARGRRASRGYK 187
>gb|AAF64457.1| (AF240374) ribosomal protein L18 [Oreochromis niloticus]
gb|AAF64458.1|AF240375_1 (AF240375) ribosomal protein L18 [Oreochromis niloticus]
gb|AAF64459.1|AF240376_1 (AF240376) ribosomal protein L18 [Oreochromis mossambicus]
Length = 188
Score = 124 bits (311), Expect = 2e-28
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR RI+ AGG+ +TFDQLAL +P GQ T+LL GP+ ARE RHFGKAPG PHSHTKPYVR
Sbjct: 109 ARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVR 168
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR S G+K
Sbjct: 169 SKGRKFERARGRRASCGYK 187
>ref|XP_009113.2| ribosomal protein L18 [Homo sapiens]
Length = 136
Score = 123 bits (309), Expect = 3e-28
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR+RI+ AGG+ LTFDQLAL +P G T+LL GP+ RE RHFGKAPG PHSHTKPYVR
Sbjct: 57 ARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVR 116
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR SRG+K
Sbjct: 117 SKGRKFERARGRRASRGYK 135
>ref|NP_000970.1| ribosomal protein L18 [Homo sapiens]
ref|XP_049965.1| ribosomal protein L18 [Homo sapiens]
ref|XP_049966.1| 25374 [Homo sapiens]
sp|Q07020|RL18_HUMAN 60S RIBOSOMAL PROTEIN L18
pir||S38352 ribosomal protein L18, cytosolic - human
gb|AAA16329.1| (L11566) ribosomal protein L18 [Homo sapiens]
gb|AAH00374.1|AAH00374 (BC000374) ribosomal protein L18 [Homo sapiens]
Length = 188
Score = 123 bits (309), Expect = 3e-28
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR+RI+ AGG+ LTFDQLAL +P G T+LL GP+ RE RHFGKAPG PHSHTKPYVR
Sbjct: 109 ARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVR 168
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR SRG+K
Sbjct: 169 SKGRKFERARGRRASRGYK 187
>sp|P09897|RLNA_XENLA 60S RIBOSOMAL PROTEIN L14A
pir||R5XL8A ribosomal protein L18.a - African clawed frog
emb|CAA29570.1| (X06222) ribosomal preprotein L14a (AA 1 to 188) [Xenopus laevis]
Length = 188
Score = 123 bits (309), Expect = 3e-28
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR+RI+ AGG+ +TFDQLAL AP GQNT+LL GP+ ARE RHFGKAP PHS TKPYV
Sbjct: 109 ARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVL 168
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR SRG+K
Sbjct: 169 SKGRKFERARGRRASRGYK 187
>emb|CAA24700.1| (V01439) ribosomal protein L14 [Xenopus laevis]
Length = 156
Score = 123 bits (308), Expect = 3e-28
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = +3
Query: 27 RARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 206
R+RI+ +GG+ +TFDQLAL AP GQNT+LL GP+ ARE RHFGKAPG PHS TKPYV S
Sbjct: 78 RSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLS 137
Query: 207 KGRKFEKARGRRNSRGFK 260
KGRKFE+ARGRR SRG+K
Sbjct: 138 KGRKFERARGRRASRGYK 155
>sp|P02412|RL18_XENLA 60S RIBOSOMAL PROTEIN L18 (L14B)
Length = 188
Score = 123 bits (308), Expect = 3e-28
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = +3
Query: 27 RARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 206
R+RI+ +GG+ +TFDQLAL AP GQNT+LL GP+ ARE RHFGKAPG PHS TKPYV S
Sbjct: 110 RSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLS 169
Query: 207 KGRKFEKARGRRNSRGFK 260
KGRKFE+ARGRR SRG+K
Sbjct: 170 KGRKFERARGRRASRGYK 187
>emb|CAC36993.1| (AJ306691) Ribosomal protein L18 [Salmo salar]
Length = 180
Score = 121 bits (304), Expect = 1e-27
Identities = 56/78 (71%), Positives = 64/78 (81%)
Frame = +3
Query: 27 RARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 206
R RI+ AGG+ +TFDQLAL AP GQ T+LL GP+ A + RHFGK PG PHSHTKPYVRS
Sbjct: 103 RTRILKAGGQIMTFDQLALAAPKGQGTVLLSGPRKAPDVSRHFGKVPGTPHSHTKPYVRS 162
Query: 207 KGRKFEKARGRRNSRGFK 260
KGRKFE+ARGRR SRG+K
Sbjct: 163 KGRKFERARGRRASRGYK 180
>pir||R5XL14 ribosomal protein L18.b - African clawed frog
emb|CAB40827.1| (X06223) ribosomal preprotein L14b (AA 1-180) [Xenopus laevis]
Length = 188
Score = 120 bits (302), Expect = 2e-27
Identities = 56/78 (71%), Positives = 65/78 (82%)
Frame = +3
Query: 27 RARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 206
R+RI+ +GG+ +TFDQLAL AP GQNT+LL GP+ ARE RHFGKAP PHS TKPYV S
Sbjct: 110 RSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLS 169
Query: 207 KGRKFEKARGRRNSRGFK 260
KGRKFE+ARGRR SRG+K
Sbjct: 170 KGRKFERARGRRASRGYK 187
>emb|CAA28689.1| (X05025) ribosomal protein L14 [Xenopus laevis]
Length = 188
Score = 119 bits (298), Expect = 5e-27
Identities = 56/78 (71%), Positives = 65/78 (82%)
Frame = +3
Query: 27 RARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 206
R+RI+ +GG+ +TFDQLAL AP GQNT+LL GP+ ARE RHFGKA G PHS TKPYV S
Sbjct: 110 RSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKALGTPHSRTKPYVLS 169
Query: 207 KGRKFEKARGRRNSRGFK 260
KGRKFE+ARGRR SRG+K
Sbjct: 170 KGRKFERARGRRASRGYK 187
>emb|CAB57235.1| (AJ270208) putative ribosomal protein [Entodinium caudatum]
Length = 169
Score = 113 bits (283), Expect = 3e-25
Identities = 54/79 (68%), Positives = 66/79 (83%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR RI A G+C+TFDQLA+ P G+N +LLRG ++ REA +HFGKAPG+P S+TKPYVR
Sbjct: 91 ARERITAAKGKCITFDQLAINRPQGENVILLRGTRD-REAKKHFGKAPGLPDSNTKPYVR 149
Query: 204 SKGRKFEKARGRRNSRGFK 260
SKGRKFE+ARGRR SRG+K
Sbjct: 150 SKGRKFERARGRRRSRGYK 168
>ref|NP_014098.1| Ribosomal protein L18B (rp28B); Rpl18bp [Saccharomyces cerevisiae]
ref|NP_014521.1| Ribosomal protein L18A (rp28A); Rpl18ap [Saccharomyces cerevisiae]
sp|P07279|RL18_YEAST 60S RIBOSOMAL PROTEIN L18 (RP28)
pir||R5BY8E ribosomal protein L18.e, cytosolic - yeast (Saccharomyces
cerevisiae)
emb|CAA25573.1| (X01099) rp 28 [Saccharomyces pastorianus]
emb|CAA26481.1| (X02635) rp 28 [Saccharomyces cerevisiae]
emb|CAA25574.1| (X01100) rp 28 [Saccharomyces pastorianus]
gb|AAC49097.1| (U23084) ribosomal protein Rp28ap [Saccharomyces cerevisiae]
emb|CAA96219.1| (Z71577) ORF YNL301c [Saccharomyces cerevisiae]
emb|CAA99139.1| (Z74862) ORF YOL120c [Saccharomyces cerevisiae]
emb|CAA64550.1| (X95258) ribosomal protein L18 [Saccharomyces cerevisiae]
Length = 186
Score = 113 bits (282), Expect = 4e-25
Identities = 55/80 (68%), Positives = 64/80 (79%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
ARA+IV AGGEC+T DQLA+RAP GQNTL+LRGP+N+REAVRHFG PH P +
Sbjct: 110 ARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRIL 166
Query: 204 SKGRKFEKARGRRNSRGFKV 263
S GRKFE+ARGRR S+GFKV
Sbjct: 167 STGRKFERARGRRRSKGFKV 186
>gb|AAK06744.1|AF318897_1 (AF318897) putative ribosomal protein [Strongylocentrotus
purpuratus]
Length = 133
Score = 112 bits (281), Expect = 5e-25
Identities = 52/79 (65%), Positives = 64/79 (80%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
ARARI+ AGGE +TFDQLAL++P GQNT+L++G + R+ RHFG+APG P +HT PYVR
Sbjct: 54 ARARIIKAGGEIITFDQLALQSPKGQNTVLMQGCRTHRKVYRHFGRAPGTPSAHTAPYVR 113
Query: 204 SKGRKFEKARGRRNSRGFK 260
+ GRKFE ARGRRN GFK
Sbjct: 114 AVGRKFETARGRRNRCGFK 132
>sp|Q10192|RL18_SCHPO 60S RIBOSOMAL PROTEIN L18
pir||S67377 ribosomal protein L18.e, cytosolic - fission yeast
(Schizosaccharomyces pombe)
pir||T39323 60s ribosomal protein l18 - fission yeast (Schizosaccharomyces
pombe)
emb|CAA20689.1| (AL031528) 60s ribosomal protein l18 [Schizosaccharomyces pombe]
Length = 187
Score = 112 bits (281), Expect = 5e-25
Identities = 57/80 (71%), Positives = 63/80 (78%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
ARARI+ AGGE LT DQLALRAP G NT+L+RG K+AREA RHFG PH H PYVR
Sbjct: 111 ARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVR 167
Query: 204 SKGRKFEKARGRRNSRGFKV 263
S+GRKFE+ARGRR SR FKV
Sbjct: 168 SEGRKFERARGRRKSRAFKV 187
>ref|NP_033103.1| ribosomal protein L18 [Mus musculus]
sp|P35980|RL18_MOUSE 60S RIBOSOMAL PROTEIN L18
pir||JN0779 ribosomal protein L18 - mouse
gb|AAA40067.1| (L04128) ribosomal protein L18 [Mus musculus]
Length = 188
Score = 108 bits (270), Expect = 9e-24
Identities = 49/78 (62%), Positives = 61/78 (77%)
Frame = +3
Query: 27 RARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 206
R+RI+ GG+ LTFDQLAL +P G+ T+LL GP+ R+ HFGK PG P+S TKPYVRS
Sbjct: 110 RSRILKGGGKILTFDQLALESPKGRGTVLLSGPRKGRDVFPHFGKVPGTPYSQTKPYVRS 169
Query: 207 KGRKFEKARGRRNSRGFK 260
KGR+ E+ARGRR SRG+K
Sbjct: 170 KGRRLERARGRRASRGYK 187
>emb|CAC14654.1| (AL449144) ribosomal protein L18 [Leishmania major]
Length = 198
Score = 96.3 bits (238), Expect = 4e-20
Identities = 50/79 (63%), Positives = 59/79 (74%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR IV AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VRHFG A GVP SH+KPY
Sbjct: 116 ARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYAT 174
Query: 204 SKGRKFEKARGRRNSRGFK 260
++G+ E RGRR R +K
Sbjct: 175 NRGK--ETKRGRRTGRSYK 191
>sp|P50885|RL18_TRYBB 60S RIBOSOMAL PROTEIN L18
gb|AAC47428.1| (U47286) ribosomal protein L18 [Trypanosoma brucei]
Length = 193
Score = 94.4 bits (233), Expect = 2e-19
Identities = 45/75 (60%), Positives = 60/75 (80%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 203
AR RI AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+V+HFG A GVP SH KP+V
Sbjct: 116 ARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVS 174
Query: 204 SKGRKFEKARGRRNS 248
S+G++ +++ RR++
Sbjct: 175 SRGKERQRSSKRRHA 189
>sp|P24558|RL18_SALSA 60S RIBOSOMAL PROTEIN L18
pir||R5ON18 ribosomal protein L18 - Atlantic salmon
emb|CAA36483.1| (X52238) ribosomal protein [Salmo salar]
Length = 179
Score = 52.0 bits (123), Expect = 1e-06
Identities = 26/51 (50%), Positives = 33/51 (63%)
Frame = +3
Query: 54 ECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 206
+ + F LAL AP Q ++LL P+NAR+ RHF AP +P HTKPYV S
Sbjct: 117 QIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165
>emb|CAB97995.1| (AL160493) hypothetical protein LM26.377 [Leishmania major]
Length = 134
Score = 32.7 bits (73), Expect = 0.61
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 79 ASWSKVRHSPPALTIL 32
+SWSKVRHSPPA T+L
Sbjct: 26 SSWSKVRHSPPAATML 41
>emb|CAB97994.1| (AL160493) probable 60S ribosomal protein l18 [Leishmania major]
Length = 136
Score = 32.7 bits (73), Expect = 0.61
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +3
Query: 24 ARARIVNAGGECLTFDQL 77
AR IV AGGECLTFDQL
Sbjct: 89 ARQSIVAAGGECLTFDQL 106
>ref|NP_003568.1| undifferentiated embryonic cell transcription factor 1 [Homo
sapiens]
dbj|BAA33463.1| (AB011076) UTF1 [Homo sapiens]
Length = 341
Score = 31.6 bits (70), Expect = 1.4
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = -1
Query: 103 FCPSGARSASWSKVRHSPPALTILALATC 17
F PS +SA S+ R SPPA ALATC
Sbjct: 204 FSPSPPKSADASRARGSPPAPAPTALATC 232
>emb|CAA32782.1| (X14634) PYR1-3B multifunctional enzyme (1014 AA) [Dictyostelium
discoideum]
Length = 1014
Score = 31.6 bits (70), Expect = 1.4
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 140 LPGVLGTPQEKRVLSKRSTERELVKGKALATGIDNPGPR 24
L + G E R+L KRS +L+KGK LAT P R
Sbjct: 725 LHALFGIAHEMRILVKRSGGSDLLKGKVLATLFYEPSTR 763
>sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DEPENDENT CARBAMOYL-PHOSPHATE
SYNTHASE ; ASPARTATE CARBAMOYLTRANSFERASE ;
DIHYDROOROTASE ]
Length = 2185
Score = 31.6 bits (70), Expect = 1.4
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 140 LPGVLGTPQEKRVLSKRSTERELVKGKALATGIDNPGPR 24
L + G E R+L KRS +L+KGK LAT P R
Sbjct: 1896 LHALFGIAHEMRILVKRSGGSDLLKGKVLATLFYEPSTR 1934
>pir||QZDOP3 pyrimidine synthesis protein PYR1-3 - slime mold (Dictyostelium
discoideum) (fragments)
Length = 1481
Score = 31.6 bits (70), Expect = 1.4
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 140 LPGVLGTPQEKRVLSKRSTERELVKGKALATGIDNPGPR 24
L + G E R+L KRS +L+KGK LAT P R
Sbjct: 1192 LHALFGIAHEMRILVKRSGGSDLLKGKVLATLFYEPSTR 1230
>ref|NP_003746.1| eukaryotic translation initiation factor 3, subunit 4 (delta,
44kD); eukaryotic translation initiation factor 3
subunit p42 [Homo sapiens]
sp|O75821|IF34_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 4 (EIF-3 DELTA)
(EIF3 P44) (EIF-3 RNA-BINDING SUBUNIT) (EIF3 P42)
gb|AAC78728.1| (U96074) translation initiation factor eIF3 p44 subunit [Homo
sapiens]
Length = 320
Score = 31.2 bits (69), Expect = 1.8
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -3
Query: 77 ELVKGKALATGIDNPGPRHLPGRPL 3
EL+KG LATG +P P LPG PL
Sbjct: 29 ELLKGIPLATGDTSPEPELLPGAPL 53
>gb|AAB71866.1| (AF020833) eukaryotic translation initiation factor 3 subunit [Homo
sapiens]
gb|AAG15396.1|AF092453_1 (AF092453) eukaryotic translation initiation factor 3 subunit
p42/p44 [Homo sapiens]
gb|AAG15419.1|AF094850_1 (AF094850) eukaryotic translation initiation factor 3 subunit
p42/p44 [Homo sapiens]
gb|AAH00733.1|AAH00733 (BC000733) eukaryotic translation initiation factor 3, subunit 4
(delta, 44kD) [Homo sapiens]
gb|AAH08469.1|AAH08469 (BC008469) eukaryotic translation initiation factor 3, subunit 4
(delta, 44kD) [Homo sapiens]
Length = 320
Score = 31.2 bits (69), Expect = 1.8
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -3
Query: 77 ELVKGKALATGIDNPGPRHLPGRPL 3
EL+KG LATG +P P LPG PL
Sbjct: 29 ELLKGIPLATGDTSPEPELLPGAPL 53
>gb|AAC33527.1| (AF036130) collagen type IX alpha I chain, long form [Homo sapiens]
Length = 921
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 149 PNSLPGVLGTPQEKRVLSKRSTERELVKGKALATGIDN-PGPRHLPGRP 6
PN LPG +G P + S R+ +G GI PGP PG P
Sbjct: 850 PNGLPGAIGLPGDPGPASYGKNGRDGERGPPGLAGIPGVPGPPGPPGLP 898
>ref|XP_004151.3| collagen, type IX, alpha 1 [Homo sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 149 PNSLPGVLGTPQEKRVLSKRSTERELVKGKALATGIDN-PGPRHLPGRP 6
PN LPG +G P + S R+ +G GI PGP PG P
Sbjct: 300 PNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGLP 348
>gb|AAC33528.1| (AF036130) collagen type IX alpha I chain, short form [Homo
sapiens]
Length = 678
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 149 PNSLPGVLGTPQEKRVLSKRSTERELVKGKALATGIDN-PGPRHLPGRP 6
PN LPG +G P + S R+ +G GI PGP PG P
Sbjct: 607 PNGLPGAIGLPGDPGPASYGKNGRDGERGPPGLAGIPGVPGPPGPPGLP 655
>ref|XP_032181.1| KIAA1233 protein [Homo sapiens]
Length = 1005
Score = 30.0 bits (66), Expect = 3.9
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +1
Query: 127 RTPGRLLGTLARLQECHTATPSHMSAPRAGNSRRQ--EEGGTAGAS----RFKPWSFRHP 288
R PGR +G R+Q+ HTA + S + +R T+GA PW P
Sbjct: 866 RCPGRCMGRAVRMQQRHTACQHNSSDSNCDDRKRPTLRRNCTSGACDVCWHTGPWK---P 922
Query: 289 CHICCYR 309
C C R
Sbjct: 923 CTAACGR 929
>dbj|BAA86547.1| (AB033059) KIAA1233 protein [Homo sapiens]
Length = 1023
Score = 30.0 bits (66), Expect = 3.9
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +1
Query: 127 RTPGRLLGTLARLQECHTATPSHMSAPRAGNSRRQ--EEGGTAGAS----RFKPWSFRHP 288
R PGR +G R+Q+ HTA + S + +R T+GA PW P
Sbjct: 884 RCPGRCMGRAVRMQQRHTACQHNSSDSNCDDRKRPTLRRNCTSGACDVCWHTGPWK---P 940
Query: 289 CHICCYR 309
C C R
Sbjct: 941 CTAACGR 947
>ref|NP_001842.1| collagen, type IX, alpha 1; Collagen IX, alpha-1 polypeptide [Homo
sapiens]
sp|P20849|CA19_HUMAN COLLAGEN ALPHA 1(IX) CHAIN PRECURSOR
pir||S13580 collagen alpha 1(IX) chain precursor, long splice form - human
emb|CAA38276.1| (X54412) alpha1(IX) collagen precursor [Homo sapiens]
Length = 931
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 149 PNSLPGVLGTPQEKRVLSKRSTERELVKGKALATGIDN-PGPRHLPGRP 6
PN LPG +G P + S R+ +G GI PGP PG P
Sbjct: 850 PNGLPGAIGLPGDPGPASYGKNGRDGERGPPGLAGIPGVPGPPGPPGLP 898
>dbj|BAA98165.1| (AB025613) receptor protein kinase-like [Arabidopsis thaliana]
Length = 946
Score = 29.6 bits (65), Expect = 5.2
Identities = 17/43 (39%), Positives = 23/43 (52%)
Frame = +1
Query: 49 VASALPLTSSRSVLRLDRTRFS*GVPRTPGRLLGTLARLQECH 177
+ +L L + +VLRLDR R S +P + L L LQE H
Sbjct: 237 IPESLGLVQNLTVLRLDRNRLSGDIPSS----LNNLTNLQELH 275
>pir||T38538 probable oxidoreductase - fission yeast (Schizosaccharomyces pombe)
emb|CAB16262.1| (Z99165) Aldo/keto reductase family oxidoreductase
[Schizosaccharomyces pombe]
Length = 275
Score = 29.6 bits (65), Expect = 5.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 131 VLGTPQEKRVLSKRSTERELVKGKALATGIDNPGPRHL 18
+L +P R+ S ++ E+ + +GK A G+ N GP H+
Sbjct: 109 LLHSPYGDRIESWKALEKGVEEGKLRAIGVSNFGPHHI 146
>ref|NP_055334.1| zinc finger protein 232 [Homo sapiens]
ref|XP_008529.4| zinc finger protein 232 [Homo sapiens]
ref|XP_028401.1| zinc finger protein 232 [Homo sapiens]
sp|Q9UNY5|Z232_HUMAN ZINC FINGER PROTEIN 232
gb|AAD46135.1| (AF080171) zinc finger protein ZNF232 [Homo sapiens]
emb|CAB95963.1| (Y15067) ZNF232 [Homo sapiens]
Length = 417
Score = 29.6 bits (65), Expect = 5.2
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 69 DQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGR--KFEKARGRR 242
+ LAL+ GQ +++ GPK ++ + + PG HS ++ R + R ++++ G R
Sbjct: 9 ETLALQGTQGQEKMMMMGPKEEEQSCEYETRLPG-NHSTSQEIFRQRFRHLRYQETPGPR 67
Query: 243 NSRG-FKV*AVEFSAPLSH 296
+ +V E+ P H
Sbjct: 68 EALSQLRVLCCEWLRPEKH 86
>pir||S77270 hypothetical protein slr0881 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17604.1| (D90907) ORF_ID:slr0881~unknown protein [Synechocystis sp. PCC
6803]
Length = 103
Score = 29.6 bits (65), Expect = 5.2
Identities = 16/31 (51%), Positives = 20/31 (63%)
Frame = +3
Query: 201 RSKGRKFEKARGRRNSRGFKV*AVEFSAPLS 293
R GRK +RGRR+S GFK A++ S P S
Sbjct: 20 RRSGRKIAWSRGRRHSSGFKQ-AIQASRPTS 49
>emb|CAB53759.1| (AJ132106) SCO-spondin [Bos taurus]
Length = 685
Score = 29.3 bits (64), Expect = 6.7
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 10/54 (18%)
Frame = +1
Query: 151 TLARLQECHTATPSHMSAP---RAGNSRRQEEGGTAGAS-------RFKPWSFRHPCHIC 300
T R + C P H AP AG + Q + T ++ + PW PC +C
Sbjct: 511 TRTRSRACSCPAPQHGGAPCPGEAGEAGAQHQRETCASTPECPVDGAWSPWGPWSPCEVC 570
Query: 301 CYRS 312
RS
Sbjct: 571 LGRS 574
>gb|AAK65859.1| (AE007305) Putative histidine utilization repressor protein
[Sinorhizobium meliloti]
Length = 315
Score = 29.3 bits (64), Expect = 6.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 61 LPLTSSRSVLRLDRTRFS*GVPRTPGRLL--GTLARLQECHTATPSHMSAPR 210
L + SS+ L LDR+ + GVP T R + G RL+ H A S ++ R
Sbjct: 252 LQIDSSQPCLLLDRSTWREGVPVTRSRFIYPGDRYRLRSSHEARQSRIATTR 303
>gb|AAC33839.1| (U93363) 2-aminomuconic acid semialdehyde dehydrogenase
[Pseudomonas pseudoalcaligenes]
Length = 542
Score = 29.3 bits (64), Expect = 6.7
Identities = 19/53 (35%), Positives = 24/53 (44%), Gaps = 1/53 (1%)
Frame = +1
Query: 124 PRTPGRL-LGTLARLQECHTATPSHMSAPRAGNSRRQEEGGTAGASRFKPWSFR 282
P PG LGT + H A + AP AG +RQ G ++ R P S R
Sbjct: 417 PHVPGGYPLGTAGATRRVHRAAGAAGGAPGAGGGKRQRAGLSSRPGRDPPRSRR 470
>pir||H82970 hypothetical protein PA5412 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG08797.1|AE004953_11 (AE004953) hypothetical protein [Pseudomonas aeruginosa]
Length = 837
Score = 28.9 bits (63), Expect = 8.8
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -3
Query: 260 LEAPAVPPSSCLLEFPALGADIWLGVAVWHSWSLAKVPNSLPGVLGTP 117
LE A+ S F A+G D+WL + W WS LP LG P
Sbjct: 268 LELQALKAGSEAEAFVAIG-DLWLPESEWQRWSGDLRAQPLPSPLGGP 314
>ref|NP_113682.1| Zinc finger protein 275 [Mus musculus]
emb|CAB88275.1| (AL049866) Zinc finger protein 275 [Mus musculus]
Length = 464
Score = 28.9 bits (63), Expect = 8.8
Identities = 19/78 (24%), Positives = 30/78 (38%)
Frame = +1
Query: 67 LTSSRSVLRLDRTRFS*GVPRTPGRLLGTLARLQECHTATPSHMSAPRAGNSRRQEEGGT 246
L S L D T+ T + +G A+LQE + + + P A + + GG
Sbjct: 62 LLVSDPTLNTDHTKHPESTSATSHQKMGEEAQLQEMASTSSPRANDPSAEVKQNGDSGGR 121
Query: 247 AGASRFKPWSFRHPCHIC 300
G+ + P C C
Sbjct: 122 GGSPQNLPIEHHFACKEC 139
>emb|CAB66134.1| (AL136399) Zinc finger protein 275 [Mus musculus]
Length = 464
Score = 28.9 bits (63), Expect = 8.8
Identities = 19/78 (24%), Positives = 30/78 (38%)
Frame = +1
Query: 67 LTSSRSVLRLDRTRFS*GVPRTPGRLLGTLARLQECHTATPSHMSAPRAGNSRRQEEGGT 246
L S L D T+ T + +G A+LQE + + + P A + + GG
Sbjct: 62 LLVSDPTLNTDHTKHPESTSATSHQKMGEEAQLQEMASTSSPRANDPSAEVKQNGDSGGR 121
Query: 247 AGASRFKPWSFRHPCHIC 300
G+ + P C C
Sbjct: 122 GGSPQNLPIEHHFACKEC 139
>emb|CAC34554.1| (Y07600) dehydrin [Pistacia vera]
Length = 230
Score = 28.9 bits (63), Expect = 8.8
Identities = 14/53 (26%), Positives = 26/53 (48%)
Frame = +2
Query: 119 GSQERQGGC*ALWQGSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLSRGV 277
G Q+++G L+QG + H +C + E +EG ++ + + G GV
Sbjct: 15 GGQKKEGEQKGLYQGEAHKVEQHHGVCKPEHGEHKEGMVQKIKNKVPGQGDGV 67
>gb|AAK24060.1| (AE005882) sodium dependent nucleoside transporter, putative
[Caulobacter crescentus]
Length = 426
Score = 28.9 bits (63), Expect = 8.8
Identities = 17/35 (48%), Positives = 19/35 (53%)
Frame = -1
Query: 205 ERTYGLVWLCGTPGALPKCLTASLAFLGPLRRSVF 101
+ GLVW G L CLTASL L P RS+F
Sbjct: 392 QEVLGLVWKAMMAGFLATCLTASLVGLMP--RSLF 424
>pir||A29789 mucin - sheep (fragment)
Length = 50
Score = 28.9 bits (63), Expect = 8.8
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -3
Query: 146 NSLPGVLGTPQEKRVLSKRSTERELVKGKALAT----GIDNPGPRHLPG 12
+S+PG TPQ+ LS+ +T+ V G + T G+ + G LPG
Sbjct: 1 SSVPGESATPQQPGALSESTTQLPGVTGTSAVTGSEPGLPSTGVSGLPG 49
>emb|CAB61669.1| (AL133213) putative membrane protein. [Streptomyces coelicolor
A3(2)]
Length = 194
Score = 28.9 bits (63), Expect = 8.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 254 APAVPPSSCLLEFPALGADIWLGVAVW 174
+PA PP S L F LGA WL + +W
Sbjct: 10 SPARPPRSRLRTFLPLGAAAWLVLEIW 36
>pir||G70879 hypothetical protein Rv2752c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15548.1| (AL008967) hypothetical protein Rv2752c [Mycobacterium
tuberculosis]
gb|AAK47141.1| (AE007110) metallo-beta-lactamase superfamily protein
[Mycobacterium tuberculosis CDC1551]
Length = 558
Score = 28.9 bits (63), Expect = 8.8
Identities = 15/53 (28%), Positives = 24/53 (44%)
Frame = -3
Query: 170 SWSLAKVPNSLPGVLGTPQEKRVLSKRSTERELVKGKALATGIDNPGPRHLPG 12
+W + + L G PQE +L++ +LV GKA +G G + G
Sbjct: 399 TWRMLRANAKLAASTGVPQESILLAENGVSVDLVAGKASISGAVPVGKMFVDG 451
>dbj|BAB03004.1| (AP001297) gb|AAF34307.1~gene_id:F14O13.5~similar to unknown
protein [Arabidopsis thaliana]
Length = 335
Score = 28.9 bits (63), Expect = 8.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 267 AVEFSAPLSHLLLSVNLHFFGYLG 338
++ FSA L+H +L LH FG LG
Sbjct: 89 SIIFSAVLAHFILKEKLHMFGILG 112
>gb|AAF14221.1|AF108214_1 (AF108214) eukaryotic translation initiation factor 3 p42 subunit
[Mus musculus]
gb|AAH08511.1|AAH08511 (BC008511) Similar to eukaryotic translation initiation factor 3,
subunit 4 (delta, 44kD) [Mus musculus]
Length = 320
Score = 28.9 bits (63), Expect = 8.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 77 ELVKGKALATGIDNPGPRHLPGRPL 3
EL+KG L TG +P P LPG PL
Sbjct: 29 ELLKGIPLPTGDTSPEPELLPGDPL 53
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,038,536
Number of Sequences: 719861
Number of extensions: 3725250
Number of successful extensions: 12066
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 11692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12059
length of database: 228,039,490
effective HSP length: 91
effective length of database: 162,532,139
effective search space used: 3900771336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)