Score E
Sequences producing significant alignments: (bits) Value
pir||T01131 hypothetical protein F26B6.7 - Arabidopsis thal... 138 8e-33
gb|AAF51037.1| (AE003577) CG3714 gene product [Drosophila m... 97 3e-20
emb|CAB16797.1| (Z99707) hypothetical protein [Arabidopsis ... 70 5e-12
ref|XP_049247.1| hypothetical protein XP_049247 [Homo sapiens] 37 0.035
gb|AAH06284.1|AAH06284 (BC006284) Unknown (protein for IMAG... 37 0.035
gb|AAK05198.1|AE006342_4 (AE006342) conserved hypothetical ... 35 0.10
pir||E71302 conserved hypothetical protein TP0628 - syphili... 35 0.13
pir||S52216 viral proteinase - rabies virus 33 0.38
pir||G75580 conserved hypothetical protein - Deinococcus ra... 32 1.5
pir||T32172 hypothetical protein C31B8.12 - Caenorhabditis ... 31 2.5
sp|Q9Z8M3|RS1_CHLPN 30S RIBOSOMAL PROTEIN S1 >gi|7440093|pi... 31 2.5
pir||B70179 conserved hypothetical protein BB0635 - Lyme di... 30 3.3
pir||T34402 hypothetical protein C37C3.1 - Caenorhabditis e... 30 3.3
emb|CAA65114.1| (X95858) phosphoenolpyruvate carboxylase [L... 30 4.2
pir||T34852 probable secreted protein - Streptomyces coelic... 30 5.5
gb|AAK34419.1| (AE006596) putative nicotinate phosphoribosy... 29 7.2
sp|P08117|AMY3_WHEAT ALPHA-AMYLASE AMY3 PRECURSOR (1,4-ALPH... 29 9.5
ref|XP_044957.1| KIAA1542 protein [Homo sapiens] 29 9.5
dbj|BAB30392.1| (AK016712) putative [Mus musculus] 29 9.5
dbj|BAA96066.1| (AB040975) KIAA1542 protein [Homo sapiens] 29 9.5
dbj|BAA36789.1| (AB017352) SF-1/Ad4BP [Rana rugosa] 29 9.5
>pir||T01131 hypothetical protein F26B6.7 - Arabidopsis thaliana
gb|AAC23757.1| (AC003040) unknown protein [Arabidopsis thaliana]
Length = 574
Score = 138 bits (348), Expect = 8e-33
Identities = 64/86 (74%), Positives = 72/86 (83%)
Frame = +2
Query: 20 PSPKAGERILCRHPFLESKRAYVVPQHVEELPHCYWPGSSDKPRAELPSLVKIRSRCMQQ 199
P PK GER+LCRHPF ESKRAYVVPQ VEEL CYW GS+D+ R LP L +IR RC++Q
Sbjct: 472 PPPKVGERLLCRHPFNESKRAYVVPQRVEELLKCYWRGSADEAREVLPPLKEIRDRCIKQ 531
Query: 200 LEKLRPDHIRRLNPTPYKVSVSAKLY 277
LE +RPDH+RRLNPTPYKVSVSAKLY
Sbjct: 532 LENMRPDHMRRLNPTPYKVSVSAKLY 557
>gb|AAF51037.1| (AE003577) CG3714 gene product [Drosophila melanogaster]
Length = 541
Score = 97.1 bits (240), Expect = 3e-20
Identities = 47/86 (54%), Positives = 58/86 (66%)
Frame = +2
Query: 20 PSPKAGERILCRHPFLESKRAYVVPQHVEELPHCYWPGSSDKPRAELPSLVKIRSRCMQQ 199
P P G+++LCRHPF ESKRAYV+P HVE L YW S K +LP+L ++R +
Sbjct: 441 PPPAVGQKVLCRHPFQESKRAYVIPSHVESLYKVYW--KSGKICQQLPTLEQVREKVQIS 498
Query: 200 LEKLRPDHIRRLNPTPYKVSVSAKLY 277
L+ LR DH R LNPTPYKV+VS LY
Sbjct: 499 LKTLRNDHKRTLNPTPYKVAVSDNLY 524
>emb|CAB16797.1| (Z99707) hypothetical protein [Arabidopsis thaliana]
emb|CAB80360.1| (AL161590) hypothetical protein [Arabidopsis thaliana]
Length = 458
Score = 69.7 bits (169), Expect = 5e-12
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +2
Query: 20 PSPKAGERILCRHPFLESKRAYVVPQHVEELPHCYWPGSS 139
P PK GER+LCRHPF ESKRAYVVPQ VEEL CYW G++
Sbjct: 418 PPPKVGERLLCRHPFNESKRAYVVPQRVEELLKCYWRGNA 457
>ref|XP_049247.1| hypothetical protein XP_049247 [Homo sapiens]
Length = 310
Score = 37.0 bits (84), Expect = 0.035
Identities = 28/85 (32%), Positives = 41/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 20 PSPKAGERILCRHPFLESKRAYVVPQHVEELPH-CYWPGSSDKPRAELPSLVKIRSRCMQ 196
P P+AG+ + P + V P VE L C G +P LPSL + R+
Sbjct: 216 PVPQAGQELRVWPPGAQEP-CTVRPAQVEPLLRLCLQQGQLCEP---LPSLAESRALAQL 271
Query: 197 QLEKLRPDHIRRLNPTPYKVSVSAKL 274
L +L P+H R +P Y+V +S +L
Sbjct: 272 SLSRLSPEHRRLRSPAQYQVVLSERL 297
>gb|AAH06284.1|AAH06284 (BC006284) Unknown (protein for IMAGE:3957135) [Homo sapiens]
Length = 542
Score = 37.0 bits (84), Expect = 0.035
Identities = 28/85 (32%), Positives = 41/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 20 PSPKAGERILCRHPFLESKRAYVVPQHVEELPH-CYWPGSSDKPRAELPSLVKIRSRCMQ 196
P P+AG+ + P + V P VE L C G +P LPSL + R+
Sbjct: 448 PVPQAGQELRVWPPGAQEP-CTVRPAQVEPLLRLCLQQGQLCEP---LPSLAESRALAQL 503
Query: 197 QLEKLRPDHIRRLNPTPYKVSVSAKL 274
L +L P+H R +P Y+V +S +L
Sbjct: 504 SLSRLSPEHRRLRSPAQYQVVLSERL 529
>gb|AAK05198.1|AE006342_4 (AE006342) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
Length = 495
Score = 35.4 bits (80), Expect = 0.10
Identities = 17/40 (42%), Positives = 26/40 (64%)
Frame = +2
Query: 158 LPSLVKIRSRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLY 277
LPSL +I+ + LE+L ++ R LNP PY V +S +L+
Sbjct: 434 LPSLQEIKEFARENLEELWDEYKRDLNPQPYPVDLSQELW 473
>pir||E71302 conserved hypothetical protein TP0628 - syphilis spirochete
gb|AAC65600.1| (AE001237) conserved hypothetical protein [Treponema pallidum]
Length = 493
Score = 35.0 bits (79), Expect = 0.13
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +2
Query: 26 PKAGERILCRHPFLESKRAYVVPQHVEELPHCYWPGSSDKPRAELPSLVKIRSRCMQQLE 205
P+ +R + HPF + VE L + E S+ +I +R QL+
Sbjct: 402 PQVAQRYI--HPFYNLQSFTFAAHQVEPLLRTVMQAGNRLRAGE--SVQEIHARMRAQLQ 457
Query: 206 KLRPDHIRRLNPTPYKVSVSAKL 274
+L ++R LNP YKVS++ +L
Sbjct: 458 RLDKSYVRLLNPHVYKVSLTERL 480
>pir||S52216 viral proteinase - rabies virus
Length = 522
Score = 33.5 bits (75), Expect = 0.38
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 116 HCYWPGSSDKPRAELPSLVKIRSRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYLPG 286
+ Y+PG + PRA ++V S +++ LR H+R PTPY +L PG
Sbjct: 317 NAYYPGEAPPPRATSRAVV---SSLQREISHLRAQHVR--YPTPYYAPAPPQLLPPG 368
>pir||G75580 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF12485.1|AE001863_110 (AE001863) conserved hypothetical protein [Deinococcus radiodurans]
Length = 474
Score = 31.6 bits (70), Expect = 1.5
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 131 GSSDKPRAELPSLVKIRSRCMQQLEKLRPDHIRRLNPTPYKVSVSAKL 274
G +P LP+L ++R ++L +L P+ R LNP Y+VS++ ++
Sbjct: 416 GQRTRPAEALPAL---QARAREELARLAPETRRLLNPHVYRVSLAPEV 460
>pir||T32172 hypothetical protein C31B8.12 - Caenorhabditis elegans
gb|AAG23971.1| (AF022971) Hypothetical protein C31B8.12 [Caenorhabditis elegans]
Length = 375
Score = 30.8 bits (68), Expect = 2.5
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 56 HPFLESKRAYVVP--QHVEELPHCYWPGSSDKPRAELPSLVKIRSRCMQQLEKLRPDHIR 229
+ F + K+ + P + +E+LP C + R ++P L++ +C+ + D ++
Sbjct: 47 YKFAKEKKIVMDPRFEKLEQLPTCDLSVDKENSRIDIPKLMESFQKCITPIVNQWRDDLK 106
Query: 230 RLNPTPYKVSVSAKLYL 280
+N K V K+++
Sbjct: 107 AMNTKWQKTEVCDKVFI 123
>sp|Q9Z8M3|RS1_CHLPN 30S RIBOSOMAL PROTEIN S1
pir||D72093 ribosomal protein S1 CP0442 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39)
gb|AAD18464.1| (AE001616) S1 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
gb|AAF38281.1| (AE002205) ribosomal protein S1 [Chlamydophila pneumoniae AR39]
dbj|BAA98525.1| (AP002546) S1 ribosomal protein [Chlamydophila pneumoniae J138]
Length = 580
Score = 30.8 bits (68), Expect = 2.5
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +2
Query: 98 HVEELPHCYWPGSSDKPRAELPSLVKIRSRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLY 277
HV EL SDKP A++ ++ I ++ KL PDH KVS+S K Y
Sbjct: 507 HVSEL--------SDKPFAKIEDIISIGENVSAKVIKLDPDH--------KKVSLSVKEY 550
Query: 278 L 280
L
Sbjct: 551 L 551
>pir||B70179 conserved hypothetical protein BB0635 - Lyme disease spirochete
gb|AAB91532.1| (AE001165) conserved hypothetical protein [Borrelia burgdorferi]
Length = 481
Score = 30.4 bits (67), Expect = 3.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 164 SLVKIRSRCMQQLEKLRPDHIRRLNPTPYKVSVSAKL 274
SL IR++ L KL + R +NP YKVS+S L
Sbjct: 431 SLTNIRNKTKLDLSKLEHTYKRIINPHIYKVSISKNL 467
>pir||T34402 hypothetical protein C37C3.1 - Caenorhabditis elegans
gb|AAC25858.1| (U64857) Hypothetical protein C37C3.1 [Caenorhabditis elegans]
Length = 470
Score = 30.4 bits (67), Expect = 3.3
Identities = 24/82 (29%), Positives = 31/82 (37%)
Frame = +2
Query: 44 ILCRHPFLESKRAYVVPQHVEELPHCYWPGSSDKPRAELPSLVKIRSRCMQQLEKLRPDH 223
+L L R+Y+ P LP WP K PSL I + LR
Sbjct: 224 LLFEEELLTDDRSYITPDIQRLLPDWAWPPILVKNEPIQPSLPVIID--FPRSSPLRAAE 281
Query: 224 IRRLNPTPYKVSVSAKLYLPGR 289
I R T + S+S + YL R
Sbjct: 282 ISRRKSTSHSTSLSKRRYLRSR 303
>emb|CAA65114.1| (X95858) phosphoenolpyruvate carboxylase [Lycopodium annotinum]
Length = 365
Score = 30.0 bits (66), Expect = 4.2
Identities = 18/49 (36%), Positives = 31/49 (62%), Gaps = 5/49 (10%)
Frame = +2
Query: 23 SPKAGERILCRHPF---LESKRAYVVPQHVEELPHCYWPGS--SDKPRAELPSL 169
+P +R+ R P+ L ++AY + + +E +C +PGS +KP AEL +L
Sbjct: 283 NPTLKQRLRLREPYITVLNVQQAYTLKKMRDESQYCSFPGSVTLNKPAAELVTL 336
>pir||T34852 probable secreted protein - Streptomyces coelicolor
emb|CAB36606.1| (AL035478) putative secreted protein [Streptomyces coelicolor
A3(2)]
Length = 1156
Score = 29.6 bits (65), Expect = 5.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 193 ATARKTAAGSHQAAKSNTLQGECECKAVPARAAA 294
ATAR +AA + QAA + G + +A ARAAA
Sbjct: 414 ATARDSAAAAQQAAVAAQASGAAQSEAAVARAAA 447
>gb|AAK34419.1| (AE006596) putative nicotinate phosphoribosyltransferase
[Streptococcus pyogenes M1 GAS]
Length = 484
Score = 29.3 bits (64), Expect = 7.2
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 155 ELPSLVKIRSRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLY 277
+LP+L +I++ ++ +KL ++ R LNP Y V ++ ++
Sbjct: 425 QLPTLAEIKAYAKKEFDKLWDEYKRVLNPQDYPVDLARDVW 465
>sp|P08117|AMY3_WHEAT ALPHA-AMYLASE AMY3 PRECURSOR (1,4-ALPHA-D-GLUCAN GLUCANOHYDROLASE)
pir||ALWT3 alpha-amylase (EC 3.2.1.1) 3 precursor - wheat
emb|CAA29252.1| (X05809) alpha-amylase [Triticum aestivum]
gb|AAA34259.1| (M16991) alpha-amylase [Triticum aestivum]
prf||1404375A alpha amylase [Triticum aestivum]
Length = 413
Score = 28.9 bits (63), Expect = 9.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 97 LGDNISPLGFKERVAAKNSLSCLW 26
+GDN+ P GFK +AAK + C+W
Sbjct: 387 IGDNVIPSGFK--IAAKGNNYCVW 408
>ref|XP_044957.1| KIAA1542 protein [Homo sapiens]
Length = 1190
Score = 28.9 bits (63), Expect = 9.5
Identities = 19/55 (34%), Positives = 26/55 (46%)
Frame = +2
Query: 2 RGRGRGPSPKAGERILCRHPFLESKRAYVVPQHVEELPHCYWPGSSDKPRAELPS 166
R RGR SP + LCRH + +R++ P E + WP K R+ PS
Sbjct: 601 RPRGRECSPTSSLERLCRHKH-QRERSHERPDRKESVA---WPRDRRKRRSRSPS 651
>dbj|BAB30392.1| (AK016712) putative [Mus musculus]
Length = 685
Score = 28.9 bits (63), Expect = 9.5
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = +2
Query: 149 RAELPSLVKIRSRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYLP 283
R PSL +IR+ C Q ++ +R L+P+P VS A L P
Sbjct: 258 RDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEP 302
>dbj|BAA96066.1| (AB040975) KIAA1542 protein [Homo sapiens]
Length = 1654
Score = 28.9 bits (63), Expect = 9.5
Identities = 19/55 (34%), Positives = 26/55 (46%)
Frame = +2
Query: 2 RGRGRGPSPKAGERILCRHPFLESKRAYVVPQHVEELPHCYWPGSSDKPRAELPS 166
R RGR SP + LCRH + +R++ P E + WP K R+ PS
Sbjct: 1122 RPRGRECSPTSSLERLCRHKH-QRERSHERPDRKESVA---WPRDRRKRRSRSPS 1172
>dbj|BAA36789.1| (AB017352) SF-1/Ad4BP [Rana rugosa]
Length = 468
Score = 28.9 bits (63), Expect = 9.5
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 38 ERILCRHPFLESKRAYVVPQHVEELPHCYWPGSSDKPRAELPSLVKIRSRCMQQLEKLRP 217
E+ L H +S + V + E C++P +DK R L L +IRS MQ E L
Sbjct: 388 EKFLENHSLAKSAQEKV-DSALMEYTMCHYPHCTDKYRLLLLRLAEIRSISMQAEEYLYH 446
Query: 218 DHI 226
H+
Sbjct: 447 KHL 449
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,606,614
Number of Sequences: 719861
Number of extensions: 3061673
Number of successful extensions: 9906
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 9666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9900
length of database: 228,039,490
effective HSP length: 74
effective length of database: 174,769,776
effective search space used: 4194474624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)