The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_1_C05_T7.seq Fgr-S_1_C05_T7 0 0 0 1 270
(270 letters)
Database: nr
719,861 sequences; 228,039,490 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB04758.1| (Z82001) PCPA [Streptococcus pneumoniae] 30 3.4
pir||T16584 hypothetical protein K09C4.8 - Caenorhabditis e... 30 5.8
>emb|CAB04758.1| (Z82001) PCPA [Streptococcus pneumoniae]
Length = 708
Score = 30.4 bits (67), Expect = 3.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 11 GRGTLPWQFRGNAENKPFQAYTRIRIIDYIYETAFVRQQSF 133
G G P +F + KPF T+I + D ++ V Q+F
Sbjct: 76 GNGVTPVEFEAGQDGKPFTIPTKITVGDKVFTVTEVASQAF 116
>pir||T16584 hypothetical protein K09C4.8 - Caenorhabditis elegans
gb|AAA83618.1| (U43375) Similar to sulfatase [Caenorhabditis elegans]
Length = 709
Score = 29.6 bits (65), Expect = 5.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 19 YITMAVQGKCREQAISGLHAHTHHRLHI*NGLC*AAEFPQVH 144
Y+T + R ++GL+ H HH +H N C E+ +VH
Sbjct: 73 YVTTPICCPSRSTILTGLYVHNHH-VHTNNQNCTGVEWRKVH 113
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,641,601
Number of Sequences: 719861
Number of extensions: 2149981
Number of successful extensions: 395136995834
Number of sequences better than 10.0: 268722308
Number of HSP's better than 10.0 without gapping: 4472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4594
length of database: 228,039,490
effective HSP length: 65
effective length of database: 181,248,525
effective search space used: 4349964600
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)