Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10554.1| (AB008265) ATP-dependent RNA helicase-like ... 65 9e-11
gb|AAD46404.1|AF096248_1 (AF096248) ethylene-responsive RNA... 53 6e-07
dbj|BAB56090.1| (AP003244) putative ethylene-responsive RNA... 51 2e-06
gb|AAG51573.1|AC027034_19 (AC027034) RNA helicase, 5' parti... 51 2e-06
pir||T51345 RNA helicase RH20 [imported] - Arabidopsis thal... 51 2e-06
gb|AAG50841.1|AC073944_8 (AC073944) ethylene-responsive RNA... 51 2e-06
emb|CAA36873.1| (X52648) p68 protein [Schizosaccharomyces p... 48 2e-05
sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN >gi|7492268|pir||T408... 48 2e-05
gb|AAF50635.1| (AE003560) CG10077 gene product [Drosophila ... 47 3e-05
gb|AAG22212.1| (AE003601) Rm62 gene product [alt 2] [Drosop... 47 5e-05
gb|AAF51927.2| (AE003601) Rm62 gene product [alt 1] [Drosop... 47 5e-05
gb|AAG22213.1| (AE003601) Rm62 gene product [alt 4] [Drosop... 47 5e-05
gb|AAF51926.1| (AE003601) Rm62 gene product [alt 3] [Drosop... 47 5e-05
sp|P19109|RM62_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE P62 47 5e-05
pir||S11485 RNA helicase - fruit fly (Drosophila melanogast... 47 5e-05
gb|AAD38876.1|AF110008_1 (AF110008) p68 RNA helicase [Molgu... 45 1e-04
gb|AAF04377.1|AF188678_1 (AF188678) P72 DEAD box protein [P... 44 3e-04
gb|AAF08584.1|AC011623_17 (AC011623) putative RNA helicase ... 44 4e-04
gb|AAD38874.1|AF110007_1 (AF110007) p68 RNA helicase [Molgu... 44 4e-04
pir||T48634 DRH1 DEAD box protein-like - Arabidopsis thalia... 43 5e-04
ref|NP_006377.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypepti... 43 7e-04
dbj|BAA28347.1| (AB010259) DRH1 [Arabidopsis thaliana] >gi|... 42 9e-04
gb|AAD40318.1|AF158370_1 (AF158370) DEAD-box RNA helicase [... 42 9e-04
gb|AAA62345.1| (L15441) ATP-dependent RNA-helicase [Macropu... 42 0.001
prf||1406327A growth regulated nuclear 68 protein [Homo sap... 42 0.001
dbj|BAB28651.1| (AK013106) putative [Mus musculus] 42 0.001
ref|NP_031866.1| DEAD (aspartate-glutamate-alanine-aspartat... 42 0.001
ref|NP_004387.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypepti... 42 0.001
gb|AAF73861.1|AF218580_1 (AF218580) p68 RNA helicase [Xenop... 42 0.001
gb|AAF46295.1| (AE003442) CG10777 gene product [Drosophila ... 42 0.001
pir||T22917 probable ATP-dependent RNA helicase F58E10.3 [s... 41 0.002
sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10 >gi|108... 39 0.007
ref|NP_014287.1| ATP-dependent RNA helicase of DEAD box fam... 38 0.016
emb|CAA93395.1| (Z69382) RNA elicase [Saccharomyces cerevis... 38 0.016
pir||T51739 RNA helicase RH5 [imported] - Arabidopsis thali... 37 0.027
gb|AAG50723.1|AC079041_16 (AC079041) p68 RNA helicase, puta... 37 0.027
dbj|BAB13306.1| (AB047381) PL10-related protein CnPL10 [Hyd... 37 0.047
ref|NP_057214.1| RNA helicase [Homo sapiens] >gi|5410326|gb... 36 0.080
pir||A57514 RNA helicase HEL117 - rat >gi|897915|gb|AAC5221... 36 0.080
ref|NP_055644.1| KIAA0801 gene product [Homo sapiens] >gi|3... 36 0.080
pir||T48796 probable ATP-dependent RNA helicase DED1 [impor... 35 0.18
ref|NP_015206.1| putative ATP-dependent RNA helicase; Dead ... 33 0.52
emb|CAA39465.1| (X55993) DBP1 [Saccharomyces cerevisiae] 33 0.52
pir||T51349 RNA helicase RH30 [imported] - Arabidopsis thal... 33 0.52
gb|AAD30599.1|AC007369_9 (AC007369) Similar to RNA helicase... 32 1.1
dbj|BAA22535.1| (AB005147) vas [Danio rerio] 31 2.0
emb|CAA72735.1| (Y12007) RNA helicase (DEAD box) [Danio rerio] 31 2.0
gb|AAF74278.2| (AF251800) vasa-like protein [Danio dangila] 31 2.0
emb|CAB85446.1| (AL162771) DEAD/DEAH box RNA helicase [Schi... 31 2.6
ref|NP_014847.1| ATP-dependent RNA helicase of DEAD box fam... 31 2.6
gb|AAF23310.1|AC016661_35 (AC016661) putative RNA helicase ... 31 2.6
prf||1705300A ATP dependent RNA helicase [Saccharomyces cer... 31 2.6
gb|AAD23001.1|AC007087_20 (AC007087) putative ATP-dependent... 30 4.4
gb|AAK29964.1| (AC024859) Hypothetical protein Y71H2AM.18 [... 30 4.4
dbj|BAA34993.1| (AB017002) DjVLGA [Dugesia japonica] 30 5.7
emb|CAA73349.1| (Y12819) putative RNA helicase (DEAD box) [... 29 7.5
emb|CAA07483.1| (AJ007376) DBY protein [Mus musculus] 29 7.5
ref|NP_014037.1| Ymr306c-ap [Saccharomyces cerevisiae] >gi|... 29 7.5
sp|Q10202|YBX6_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C1... 29 9.7
>dbj|BAB10554.1| (AB008265) ATP-dependent RNA helicase-like protein [Arabidopsis
thaliana]
Length = 564
Score = 65.5 bits (158), Expect = 9e-11
Identities = 31/44 (70%), Positives = 37/44 (83%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
AGA GMAFTFFTH NAK++R LVKIL+EAGQVV P L A+ +S+
Sbjct: 477 AGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSALVRSS 520
>gb|AAD46404.1|AF096248_1 (AF096248) ethylene-responsive RNA helicase [Lycopersicon
esculentum]
Length = 474
Score = 52.8 bits (125), Expect = 6e-07
Identities = 24/44 (54%), Positives = 34/44 (76%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
AGA+G A+TFFT +NA+++++LV IL EAGQ V+P L M + A
Sbjct: 408 AGASGTAYTFFTAANARFAKDLVNILEEAGQKVSPELAKMGRGA 451
>dbj|BAB56090.1| (AP003244) putative ethylene-responsive RNA helicase [Oryza sativa]
Length = 494
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/44 (52%), Positives = 33/44 (74%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
AGA G A+TFFT +NA+++++L+ IL EAGQ V+P L M + A
Sbjct: 430 AGAKGTAYTFFTAANARFAKDLINILEEAGQKVSPELANMGRGA 473
>gb|AAG51573.1|AC027034_19 (AC027034) RNA helicase, 5' partial; 101954-101280 [Arabidopsis
thaliana]
Length = 155
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKS 127
AGA G A+TFFT +NA++++ L IL+EAGQ V+P L +M +S
Sbjct: 92 AGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRS 134
>pir||T51345 RNA helicase RH20 [imported] - Arabidopsis thaliana (fragment)
emb|CAA09209.1| (AJ010470) RNA helicase [Arabidopsis thaliana]
Length = 187
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKS 127
AGA G A+TFFT +NA++++ L IL+EAGQ V+P L +M +S
Sbjct: 124 AGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRS 166
>gb|AAG50841.1|AC073944_8 (AC073944) ethylene-responsive RNA helicase, putative [Arabidopsis
thaliana]
Length = 501
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKS 127
AGA G A+TFFT +NA++++ L IL+EAGQ V+P L +M +S
Sbjct: 438 AGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRS 480
>emb|CAA36873.1| (X52648) p68 protein [Schizosaccharomyces pombe]
Length = 550
Score = 48.1 bits (113), Expect = 2e-05
Identities = 23/42 (54%), Positives = 30/42 (70%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSK 130
AGA G A+T+FT NAK +R LV IL EA Q ++P LE M++
Sbjct: 463 AGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMAR 504
>sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN
pir||T40810 p68-like protein - fission yeast (Schizosaccharomyces pombe)
pir||S14048 RNA helicase dbp2 [similarity] - fission yeast
(Schizosaccharomyces pombe)
gb|AAA35319.1| (L11574) p68 RNA helicase [Schizosaccharomyces pombe]
emb|CAA21801.1| (AL032684) p68-like protein. [Schizosaccharomyces pombe]
Length = 550
Score = 48.1 bits (113), Expect = 2e-05
Identities = 23/42 (54%), Positives = 30/42 (70%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSK 130
AGA G A+T+FT NAK +R LV IL EA Q ++P LE M++
Sbjct: 463 AGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMAR 504
>gb|AAF50635.1| (AE003560) CG10077 gene product [Drosophila melanogaster]
Length = 811
Score = 47.0 bits (110), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = -3
Query: 246 TGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
TG A+T FTHSNA + +L+++LREA Q +NP L M+
Sbjct: 494 TGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMA 531
>gb|AAG22212.1| (AE003601) Rm62 gene product [alt 2] [Drosophila melanogaster]
Length = 578
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G +F FFT +NAK ++ LV +LREA Q +NPALE +++++
Sbjct: 487 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 526
>gb|AAF51927.2| (AE003601) Rm62 gene product [alt 1] [Drosophila melanogaster]
Length = 578
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G +F FFT +NAK ++ LV +LREA Q +NPALE +++++
Sbjct: 487 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 526
>gb|AAG22213.1| (AE003601) Rm62 gene product [alt 4] [Drosophila melanogaster]
Length = 574
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G +F FFT +NAK ++ LV +LREA Q +NPALE +++++
Sbjct: 483 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 522
>gb|AAF51926.1| (AE003601) Rm62 gene product [alt 3] [Drosophila melanogaster]
Length = 577
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G +F FFT +NAK ++ LV +LREA Q +NPALE +++++
Sbjct: 486 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 525
>sp|P19109|RM62_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE P62
Length = 575
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G +F FFT +NAK ++ LV +LREA Q +NPALE +++++
Sbjct: 484 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 523
>pir||S11485 RNA helicase - fruit fly (Drosophila melanogaster)
emb|CAA37037.1| (X52846) RNA helicase [Drosophila melanogaster]
Length = 575
Score = 46.6 bits (109), Expect = 5e-05
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G +F FFT +NAK ++ LV +LREA Q +NPALE +++++
Sbjct: 484 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 523
>gb|AAD38876.1|AF110008_1 (AF110008) p68 RNA helicase [Molgula occulta]
Length = 619
Score = 45.1 bits (105), Expect = 1e-04
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKS 127
G A+TFFT+ NAK +++LV IL+EA Q VNP L M S
Sbjct: 494 GTAYTFFTYDNAKQAKDLVGILQEAKQAVNPKLLEMGMS 532
>gb|AAF04377.1|AF188678_1 (AF188678) P72 DEAD box protein [Pisum sativum]
Length = 716
Score = 43.9 bits (102), Expect = 3e-04
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
AGATG+A+TFF +AK++ +L+KIL A Q V P L +S
Sbjct: 490 AGATGIAYTFFGDQDAKHASDLIKILEGANQKVPPELRELS 530
>gb|AAF08584.1|AC011623_17 (AC011623) putative RNA helicase [Arabidopsis thaliana]
Length = 1088
Score = 43.5 bits (101), Expect = 4e-04
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNP 151
AGATG+AFTFFT + KY+ +L+K+L A Q V P
Sbjct: 773 AGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPP 807
>gb|AAD38874.1|AF110007_1 (AF110007) p68 RNA helicase [Molgula oculata]
gb|AAD38877.1|AF110009_1 (AF110009) p68 RNA helicase [Molgula oculata]
Length = 618
Score = 43.5 bits (101), Expect = 4e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
G A+TFFT+ NAK +++L+ IL+EA Q VNP L
Sbjct: 492 GTAYTFFTYDNAKQAKDLIAILQEAKQAVNPKL 524
>pir||T48634 DRH1 DEAD box protein-like - Arabidopsis thaliana
emb|CAB87628.1| (AL163792) DRH1 DEAD box protein-like [Arabidopsis thaliana]
Length = 713
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/41 (48%), Positives = 29/41 (69%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
AGATG+A+TFF +AK++ +L+KIL A Q V P + M+
Sbjct: 567 AGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMA 607
>ref|NP_006377.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, isoform 1;
DEAD-box protein p72; probable RNA-dependent helicase
p72 [Homo sapiens]
ref|XP_039290.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD)
(H. sapiens) [Homo sapiens]
ref|XP_039289.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD)
(H. sapiens) [Homo sapiens]
ref|XP_039291.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD)
(H. sapiens) [Homo sapiens]
sp|Q92841|DD17_HUMAN PROBABLE RNA-DEPENDENT HELICASE P72 (DEAD-BOX PROTEIN P72) (DEAD
BOX PROTEIN 17)
pir||S72367 ATP-dependent RNA helicase - human
gb|AAC50787.1| (U59321) DEAD-box protein p72 [Homo sapiens]
emb|CAB09792.1| (Z97056) dJ434P1.3 (DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17
(72kD)) [Homo sapiens]
gb|AAH00595.1|AAH00595 (BC000595) DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD)
[Homo sapiens]
Length = 650
Score = 42.7 bits (99), Expect = 7e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
G A+TFFT N K +R L+K+L EA Q +NP L
Sbjct: 437 GTAYTFFTPGNLKQARELIKVLEEANQAINPKL 469
>dbj|BAA28347.1| (AB010259) DRH1 [Arabidopsis thaliana]
gb|AAF01539.1|AC009325_9 (AC009325) RNA helicase, DRH1 [Arabidopsis thaliana]
Length = 619
Score = 42.4 bits (98), Expect = 9e-04
Identities = 20/41 (48%), Positives = 28/41 (67%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
AGATG AFTFF ++K++ +L+KIL A Q V P + M+
Sbjct: 496 AGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>gb|AAD40318.1|AF158370_1 (AF158370) DEAD-box RNA helicase [Gallus gallus]
Length = 595
Score = 42.4 bits (98), Expect = 9e-04
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = -3
Query: 246 TGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
TG A+TFFT +N K +L+ +LREA Q +NP L
Sbjct: 426 TGTAYTFFTPNNIKQVNDLISVLREANQAINPKL 459
>gb|AAA62345.1| (L15441) ATP-dependent RNA-helicase [Macropus eugenii]
Length = 200
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = -3
Query: 246 TGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
TG A+TFFT +N K +L+ +LREA Q +NP L
Sbjct: 52 TGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 85
>prf||1406327A growth regulated nuclear 68 protein [Homo sapiens]
Length = 594
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = -3
Query: 246 TGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
TG A+TFFT +N K +L+ +LREA Q +NP L
Sbjct: 418 TGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 451
>dbj|BAB28651.1| (AK013106) putative [Mus musculus]
Length = 304
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = -3
Query: 246 TGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
TG A+TFFT +N K +L+ +LREA Q +NP L
Sbjct: 127 TGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 160
>ref|NP_031866.1| DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 5;
D-E-A-D (aspartate-glutamate-alanine-aspartate) box
polypeptide 5 [Mus musculus]
sp|Q61656|DDX5_MOUSE PROBABLE RNA-DEPENDENT HELICASE P68 (DEAD-BOX PROTEIN P68)
(DEAD-BOX PROTEIN 5) (DEAD-BOX RNA HELICASE DEAD1)
(MDEAD1)
pir||I48385 RNA helicase TNZ2 - mouse
emb|CAA46581.1| (X65627) p68 RNA helicase [Mus musculus]
Length = 614
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = -3
Query: 246 TGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
TG A+TFFT +N K +L+ +LREA Q +NP L
Sbjct: 438 TGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>ref|NP_004387.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5; DEAD/H box-5; RNA
helicase p68; p68 nuclear antigen; RNA-dependent ATPase
[Homo sapiens]
ref|XP_008344.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD)
[Homo sapiens]
ref|XP_034209.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD)
[Homo sapiens]
ref|XP_034210.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD)
[Homo sapiens]
sp|P17844|DDX5_HUMAN PROBABLE RNA-DEPENDENT HELICASE P68 (DEAD-BOX PROTEIN P68)
(DEAD-BOX PROTEIN 5)
pir||JC1087 RNA helicase, ATP-dependent - human
emb|CAA36324.1| (X52104) p68 protein (AA 1-614) [Homo sapiens]
emb|CAA33751.1| (X15729) protein p68 (AA 1-614) [Homo sapiens]
gb|AAB84094.1| (AF015812) RNA helicase p68 [Homo sapiens]
Length = 614
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = -3
Query: 246 TGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
TG A+TFFT +N K +L+ +LREA Q +NP L
Sbjct: 438 TGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>gb|AAF73861.1|AF218580_1 (AF218580) p68 RNA helicase [Xenopus laevis]
Length = 608
Score = 41.6 bits (96), Expect = 0.001
Identities = 18/34 (52%), Positives = 23/34 (66%)
Frame = -3
Query: 246 TGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
TG A+TFFT N K +L+ +LREA Q +NP L
Sbjct: 436 TGTAYTFFTPGNIKQVNDLISVLREANQAINPNL 469
>gb|AAF46295.1| (AE003442) CG10777 gene product [Drosophila melanogaster]
Length = 945
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 27/39 (68%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKS 127
G A+TFFT NAK +R L+ +L EAGQ + AL +++S
Sbjct: 589 GTAYTFFTPDNAKQARELISVLEEAGQTPSQALLDLARS 627
>pir||T22917 probable ATP-dependent RNA helicase F58E10.3 [similarity] -
Caenorhabditis elegans
emb|CAB04518.1| (Z81555) contains similarity to Pfam domain: PF00270 (DEAD/DEAH box
helicase), Score=205.7, E-value=1.3e-64, N=1; PF00271
(Helicases conserved C-terminal domain), Score=126.7,
E-value=1.3e-34, N=1~cDNA EST EMBL:Z14873 comes from
this gene; cDNA EST EMB>
Length = 561
Score = 41.2 bits (95), Expect = 0.002
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = -3
Query: 243 GMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
G A+TFFTH+NA +++L+K+L EA Q V AL M+
Sbjct: 474 GTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRDMA 510
>sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10
pir||S42639 ATP-dependent RNA helicase DB10 - wood tobacco
dbj|BAA03763.1| (D16247) RNA helicase like protein DB10 [Nicotiana sylvestris]
Length = 607
Score = 39.3 bits (90), Expect = 0.007
Identities = 18/41 (43%), Positives = 29/41 (69%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
AGA+G+A+TFF+ ++K++ +LVK+L A Q V L M+
Sbjct: 483 AGASGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMA 523
>ref|NP_014287.1| ATP-dependent RNA helicase of DEAD box family; Dbp2p [Saccharomyces
cerevisiae]
sp|P24783|DBP2_YEAST P68-LIKE PROTEIN
pir||S13757 RNA helicase DBP2 - yeast (Saccharomyces cerevisiae)
emb|CAA36874.1| (X52649) p68 protein [Saccharomyces cerevisiae]
emb|CAA95991.1| (Z71388) ORF YNL112w [Saccharomyces cerevisiae]
Length = 546
Score = 38.1 bits (87), Expect = 0.016
Identities = 18/37 (48%), Positives = 22/37 (58%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
AGATG A +FFT N L+ I+REA Q + P L
Sbjct: 454 AGATGTAISFFTEQNKGLGAKLISIMREANQNIPPEL 490
>emb|CAA93395.1| (Z69382) RNA elicase [Saccharomyces cerevisiae]
Length = 547
Score = 38.1 bits (87), Expect = 0.016
Identities = 18/37 (48%), Positives = 22/37 (58%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
AGATG A +FFT N L+ I+REA Q + P L
Sbjct: 455 AGATGTAISFFTEQNKGLGAKLISIMREANQNIPPEL 491
>pir||T51739 RNA helicase RH5 [imported] - Arabidopsis thaliana (fragment)
emb|CAA09197.1| (AJ010458) RNA helicase [Arabidopsis thaliana]
Length = 411
Score = 37.4 bits (85), Expect = 0.027
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVV 157
AG G+A TFFT N + LV +LREAGQVV
Sbjct: 334 AGKKGVAHTFFTPLNKGLAGELVNVLREAGQVV 366
>gb|AAG50723.1|AC079041_16 (AC079041) p68 RNA helicase, putative [Arabidopsis thaliana]
gb|AAG50784.1|AC074309_1 (AC074309) RNA helicase, putative [Arabidopsis thaliana]
Length = 537
Score = 37.4 bits (85), Expect = 0.027
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVV 157
AG G+A TFFT N + LV +LREAGQVV
Sbjct: 460 AGKKGVAHTFFTPLNKGLAGELVNVLREAGQVV 492
>dbj|BAB13306.1| (AB047381) PL10-related protein CnPL10 [Hydra magnipapillata]
Length = 628
Score = 36.6 bits (83), Expect = 0.047
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
AG TG+A +FF N +R+L+ IL EA Q + LE+M A
Sbjct: 525 AGHTGLAISFFNDKNRNVARDLMDILAEAKQEIPSWLESMGYQA 568
>ref|NP_057214.1| RNA helicase [Homo sapiens]
gb|AAD43033.1| (AF106680) RNA helicase [Homo sapiens]
Length = 1031
Score = 35.8 bits (81), Expect = 0.080
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAM 136
AG G A+TF T A+Y+ +++K L +G V P LE +
Sbjct: 712 AGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 751
>pir||A57514 RNA helicase HEL117 - rat
gb|AAC52210.1| (U25746) RNA helicase [Rattus norvegicus]
Length = 1032
Score = 35.8 bits (81), Expect = 0.080
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAM 136
AG G A+TF T A+Y+ +++K L +G V P LE +
Sbjct: 713 AGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
>ref|NP_055644.1| KIAA0801 gene product [Homo sapiens]
dbj|BAA34521.1| (AB018344) KIAA0801 protein [Homo sapiens]
Length = 1032
Score = 35.8 bits (81), Expect = 0.080
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAM 136
AG G A+TF T A+Y+ +++K L +G V P LE +
Sbjct: 713 AGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
>pir||T48796 probable ATP-dependent RNA helicase DED1 [imported] - Neurospora
crassa
emb|CAB88635.1| (AL353822) probable ATP-dependent RNA helicase DED1 [Neurospora
crassa]
Length = 688
Score = 34.7 bits (78), Expect = 0.18
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
AG TG+A FF N R L+++L+EA Q V LE +++ +
Sbjct: 547 AGNTGIATAFFNRGNRGVVRELLELLKEANQEVPAFLETIARES 590
>ref|NP_015206.1| putative ATP-dependent RNA helicase; Dead box protein; Dbp1p
[Saccharomyces cerevisiae]
sp|P24784|DBP1_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE DBP1 (HELICASE CA1)
pir||S62003 probable ATP-dependent RNA helicase DBP1 - yeast (Saccharomyces
cerevisiae)
gb|AAB68243.1| (U43503) Dbp1p,Lph8p [Saccharomyces cerevisiae]
Length = 617
Score = 33.1 bits (74), Expect = 0.52
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSK 130
AG TG+A +FF +N + L++IL EA Q V L +S+
Sbjct: 505 AGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSR 546
>emb|CAA39465.1| (X55993) DBP1 [Saccharomyces cerevisiae]
Length = 618
Score = 33.1 bits (74), Expect = 0.52
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSK 130
AG TG+A +FF +N + L++IL EA Q V L +S+
Sbjct: 506 AGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSR 547
>pir||T51349 RNA helicase RH30 [imported] - Arabidopsis thaliana (fragment)
emb|CAA09215.1| (AJ010476) RNA helicase [Arabidopsis thaliana]
Length = 263
Score = 33.1 bits (74), Expect = 0.52
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNA 208
AGA GMAFTFFTH NA
Sbjct: 248 AGAKGMAFTFFTHDNA 263
>gb|AAD30599.1|AC007369_9 (AC007369) Similar to RNA helicases [Arabidopsis thaliana]
Length = 1166
Score = 32.0 bits (71), Expect = 1.1
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
AG G A TF + +AKY+ +LVK L + Q V L+A++
Sbjct: 870 AGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALA 910
>dbj|BAA22535.1| (AB005147) vas [Danio rerio]
Length = 716
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 252 GATGMAFTFFT-HSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G TG A +FF S+ +R+LVK+L A QVV LE ++ SA
Sbjct: 624 GNTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWLEEVAFSA 667
>emb|CAA72735.1| (Y12007) RNA helicase (DEAD box) [Danio rerio]
Length = 700
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 252 GATGMAFTFFT-HSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G TG A +FF S+ +R+LVK+L A QVV LE ++ SA
Sbjct: 608 GNTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWLEEVAFSA 651
>gb|AAF74278.2| (AF251800) vasa-like protein [Danio dangila]
Length = 399
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 252 GATGMAFTFFT-HSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
G TG A +FF S+ +R+LVK+L A QVV LE ++ SA
Sbjct: 307 GNTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWLEEVAFSA 350
>emb|CAB85446.1| (AL162771) DEAD/DEAH box RNA helicase [Schizosaccharomyces pombe]
Length = 1014
Score = 30.8 bits (68), Expect = 2.6
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
AG TG+A TF T KY+ ++ K L+ + Q V L+ ++
Sbjct: 762 AGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLA 802
>ref|NP_014847.1| ATP-dependent RNA helicase of DEAD box family; Ded1p [Saccharomyces
cerevisiae]
sp|P06634|DED1_YEAST PUTATIVE ATP-DEPENDENT RNA HELICASE DED1
pir||S13653 ATP-dependent RNA helicase DED1 - yeast (Saccharomyces cerevisiae)
emb|CAA40546.1| (X57278) Ded1p (Spp81p) [Saccharomyces cerevisiae]
emb|CAA99419.1| (Z75110) ORF YOR204w [Saccharomyces cerevisiae]
Length = 604
Score = 30.8 bits (68), Expect = 2.6
Identities = 18/44 (40%), Positives = 23/44 (51%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
AG TG+A FF N+ + L +IL EA Q V L+ SA
Sbjct: 493 AGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSA 536
>gb|AAF23310.1|AC016661_35 (AC016661) putative RNA helicase [Arabidopsis thaliana]
Length = 989
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSK 130
AG G A TF + +AKY+ +LVK L + Q V ++A+++
Sbjct: 708 AGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAE 749
>prf||1705300A ATP dependent RNA helicase [Saccharomyces cerevisiae]
Length = 604
Score = 30.8 bits (68), Expect = 2.6
Identities = 18/44 (40%), Positives = 23/44 (51%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
AG TG+A FF N+ + L +IL EA Q V L+ SA
Sbjct: 493 AGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSA 536
>gb|AAD23001.1|AC007087_20 (AC007087) putative ATP-dependent RNA helicase [Arabidopsis
thaliana]
Length = 633
Score = 30.0 bits (66), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVV 157
AG +G+A FF N +R L ++++EA Q V
Sbjct: 512 AGKSGLATAFFNDGNTSLARPLAELMQEANQEV 544
>gb|AAK29964.1| (AC024859) Hypothetical protein Y71H2AM.18 [Caenorhabditis elegans]
Length = 328
Score = 30.0 bits (66), Expect = 4.4
Identities = 15/40 (37%), Positives = 22/40 (54%)
Frame = -3
Query: 252 GATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
G G+A +FF N +R L+ ++ EA Q + LE MS
Sbjct: 207 GNVGLATSFFNDKNRNIARELMDLIVEANQELPDWLEGMS 246
>dbj|BAA34993.1| (AB017002) DjVLGA [Dugesia japonica]
Length = 726
Score = 29.6 bits (65), Expect = 5.7
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = -3
Query: 252 GATGMAFTFFTHSNAKYSRNLVKILREAGQVV 157
G G A +F+T N ++ LV IL EA Q+V
Sbjct: 561 GNLGEAISFYTDKNNNVAKELVDILLEANQIV 592
>emb|CAA73349.1| (Y12819) putative RNA helicase (DEAD box) [Danio rerio]
Length = 688
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = -3
Query: 252 GATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
G G+A +FF N +++L+ IL EA Q V LE+++
Sbjct: 568 GNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLA 607
>emb|CAA07483.1| (AJ007376) DBY protein [Mus musculus]
Length = 658
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = -3
Query: 252 GATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMS 133
G G+A +FF N +++L+ +L EA Q V LE+M+
Sbjct: 535 GNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMA 574
>ref|NP_014037.1| Ymr306c-ap [Saccharomyces cerevisiae]
pir||S69862 hypothetical protein YMR306c-a - yeast (Saccharomyces cerevisiae)
Length = 129
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 248 LLGWHSRSSRIPMQNIQGILLRSCAKLGRL*IQR 147
LLGW S R+P N G+ +S AK G + I+R
Sbjct: 49 LLGWKIPSKRVPSSNSCGLDTKSPAKNGAMSIKR 82
>sp|Q10202|YBX6_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C17D1.06
pir||S67386 probable ATP-dependent RNA helicase - fission yeast
(Schizosaccharomyces pombe)
pir||T39709 probable atp-dependent rna helicase - fission yeast
(Schizosaccharomyces pombe)
emb|CAA20430.1| (AL031322) putative atp-dependent rna helicase [Schizosaccharomyces
pombe]
Length = 578
Score = 28.9 bits (63), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPAL 145
A G A TFFT + ++ LV +LR+A Q + L
Sbjct: 510 ANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGL 546
Database: nr
Posted date: Jul 19, 2001 11:49 AM
Number of letters in database: 228,039,490
Number of sequences in database: 719,861
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,860,911
Number of Sequences: 719861
Number of extensions: 1628584
Number of successful extensions: 3926
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 3905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3926
length of database: 228,039,490
effective HSP length: 67
effective length of database: 179,808,803
effective search space used: 4315411272
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)