The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_7_G07_T7.seq Fgr-S_7_G07_T7 0 0 0 1 185
(185 letters)
Database: nr
722,277 sequences; 228,742,487 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA93581.1| (AB038620) ORF1 [TT virus] 32 1.7
gb|AAK11712.1|AF345529_1 (AF345529) Orf1 [TT virus] 32 1.7
pir||T02286 hypothetical protein T13D8.23 - Arabidopsis tha... 31 2.9
dbj|BAA94878.1| (AB028669) ORF1 [TT virus] 30 3.8
dbj|BAA82149.2| (AB025946) ORF1 [TT virus] 29 8.4
>dbj|BAA93581.1| (AB038620) ORF1 [TT virus]
Length = 745
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -1
Query: 176 RPGRYSKTLPLGVQLFRHKHEMVYNNSTWTDGRGKMTP 63
+P Y+KT P+ +F ++ + + WTDGRGK+ P
Sbjct: 504 KPPMYNKTNPMMGYVFYDRN---FGDGKWTDGRGKIEP 538
>gb|AAK11712.1|AF345529_1 (AF345529) Orf1 [TT virus]
Length = 745
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -1
Query: 176 RPGRYSKTLPLGVQLFRHKHEMVYNNSTWTDGRGKMTP 63
+P Y+KT P+ +F ++ + + WTDGRGK+ P
Sbjct: 504 KPPMYNKTNPMMGYVFYDRN---FGDGKWTDGRGKIEP 538
>pir||T02286 hypothetical protein T13D8.23 - Arabidopsis thaliana
gb|AAC24072.1| (AC004473) Contains similarity to goliath protein gb|M97204 from D.
melanogster. [Arabidopsis thaliana]
Length = 327
Score = 30.8 bits (68), Expect = 2.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 35 CVVCASVIALASSSPVHRSMSSCCRPFRVYGGITERPRATFLSTCP 172
C C ++ +ASS+P + C R F V +RPR TF P
Sbjct: 26 CYHCDRMVRIASSNPSEIACPRCLRQFVVEIETRQRPRFTFNHATP 71
>dbj|BAA94878.1| (AB028669) ORF1 [TT virus]
Length = 746
Score = 30.4 bits (67), Expect = 3.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 176 RPGRYSKTLPLGVQLFRHKHEMVYNNSTWTDGRGKMTP 63
+P Y+KT P +F ++ + + WTDGRGK+ P
Sbjct: 505 KPPMYNKTNPAMGYVFYDRN---FGDGKWTDGRGKIEP 539
>dbj|BAA82149.2| (AB025946) ORF1 [TT virus]
Length = 745
Score = 29.3 bits (64), Expect = 8.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 176 RPGRYSKTLPLGVQLFRHKHEMVYNNSTWTDGRGKMTP 63
+P Y+KT P+ +F ++ + + W DGRGK+ P
Sbjct: 504 KPPMYNKTNPMMGYVFYDRN---FGDGKWIDGRGKIEP 538
Database: nr
Posted date: Jul 23, 2001 8:52 PM
Number of letters in database: 228,742,487
Number of sequences in database: 722,277
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,080,572
Number of Sequences: 722277
Number of extensions: 1444283
Number of successful extensions: 3990
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3990
length of database: 228,742,487
effective HSP length: 37
effective length of database: 202,018,238
effective search space used: 4848437712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)