The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_7_H03_T7.seq Fgr-S_7_H03_T7 0 0 0 1 282
(282 letters)
Database: nr
722,277 sequences; 228,742,487 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA99532.1| (AP002484) hypothetical protein [Oryza sativa] 35 0.10
gb|AAK54292.1|AC034258_10 (AC034258) putative helicase [Ory... 33 0.39
gb|AAD20107.1| (AC006304) putative helicase [Arabidopsis th... 33 0.67
ref|NP_078952.1| hypothetical protein FLJ22938 [Homo sapien... 30 5.7
pir||T26471 hypothetical protein Y11D7A.13 - Caenorhabditis... 30 5.7
gb|AAK04122.1|AE006242_1 (AE006242) mannitol 1-phosphate 5-... 29 9.7
>dbj|BAA99532.1| (AP002484) hypothetical protein [Oryza sativa]
Length = 1489
Score = 35.4 bits (80), Expect = 0.10
Identities = 18/37 (48%), Positives = 22/37 (58%)
Frame = -2
Query: 128 GMISLPKFGD*PTPLDRLMRFDGDAVSSQFM*LIREY 18
G I LPK P PL L+ F+GDA S +F+ IR Y
Sbjct: 144 GKIQLPKLRPPPEPLATLINFNGDARSKRFLRQIRSY 180
>gb|AAK54292.1|AC034258_10 (AC034258) putative helicase [Oryza sativa]
Length = 1501
Score = 33.5 bits (75), Expect = 0.39
Identities = 22/65 (33%), Positives = 31/65 (46%)
Frame = -2
Query: 212 ALFWFREGSIHHAEATSHSPIYMGCCWAGMISLPKFGD*PTPLDRLMRFDGDAVSSQFM* 33
AL W E S+H +T P + CC G ++LP + P L L+ DG S+ +
Sbjct: 168 ALMWHAERSLH---STVKQPSFGLCCKQGKVALPPLKEQPPYLTSLLTRDGGR-STNYQQ 223
Query: 32 LIREY 18
IR Y
Sbjct: 224 NIRSY 228
>gb|AAD20107.1| (AC006304) putative helicase [Arabidopsis thaliana]
Length = 1230
Score = 32.7 bits (73), Expect = 0.67
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 212 ALFWFREGSIHHAEATSHSPIYMGCCWAGMISLPKFGD*P 93
A+FW+ G + S +P+Y GCC G I LP + P
Sbjct: 73 AIFWY--GERLNRRKKSANPVYTGCCMQGQIVLPMLKESP 110
>ref|NP_078952.1| hypothetical protein FLJ22938 [Homo sapiens]
ref|XP_017443.1| hypothetical protein FLJ22938 [Homo sapiens]
dbj|BAB15504.1| (AK026591) unnamed protein product [Homo sapiens]
Length = 207
Score = 29.6 bits (65), Expect = 5.7
Identities = 17/55 (30%), Positives = 25/55 (44%)
Frame = +2
Query: 47 KKPHPHQSASACPKE*ASHQTSAAKSCPPNNIPCK*ESEKLLQHGV*ILHETKIK 211
+KPHPH+ A+ P+E S+ + P N E L + GV E +K
Sbjct: 28 EKPHPHEEATTLPEEAPSNDERTPEEEAPPNEQRPLREEVLPKEGVASKEEVTLK 82
>pir||T26471 hypothetical protein Y11D7A.13 - Caenorhabditis elegans
emb|CAA21592.1| (AL032632) Y11D7A.13 [Caenorhabditis elegans]
Length = 440
Score = 29.6 bits (65), Expect = 5.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 48 RNRIPIKAHQPVQRSRLVTKLRQRNHARPTT 140
+N P + H P R++ K++ NH PTT
Sbjct: 170 KNTCPARIHTPFDAERVIHKVQVHNHPPPTT 200
>gb|AAK04122.1|AE006242_1 (AE006242) mannitol 1-phosphate 5-dehydrogenase (EC 1.1.1.17)
[Lactococcus lactis subsp. lactis]
Length = 385
Score = 28.9 bits (63), Expect = 9.7
Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Frame = +1
Query: 58 SPSKRISLSKGVG*SPNFGSEIMPAQQH-PM*IGE*EVASAWCIDPSRNQNKAPTCPGR* 234
S S ++ LSK +G I+PAQ+H + E E S W ID S +NK G
Sbjct: 142 SESDKLYLSKFIGFPNAAVDRIVPAQKHKDVLYVEVEPFSEWVIDASHLKNKEIKLEGVH 201
Query: 235 PTTEM 249
TT++
Sbjct: 202 YTTDL 206
Database: nr
Posted date: Jul 23, 2001 8:52 PM
Number of letters in database: 228,742,487
Number of sequences in database: 722,277
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,306,440
Number of Sequences: 722277
Number of extensions: 2431448
Number of successful extensions: 395136996213
Number of sequences better than 10.0: 268722316
Number of HSP's better than 10.0 without gapping: 4872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4981
length of database: 228,742,487
effective HSP length: 69
effective length of database: 178,905,374
effective search space used: 4293728976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)