The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_8_D01_T7.seq Fgr-S_8_D01_T7 0 0 0 1 316
(316 letters)
Database: nr
722,277 sequences; 228,742,487 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02262.1| (AP002053) gene_id:T13O13.1~unknown protein... 49 7e-06
gb|AAK42360.1| (AE006824) Pterin-4-alpha-carbinolamine dehy... 29 9.3
>dbj|BAB02262.1| (AP002053) gene_id:T13O13.1~unknown protein [Arabidopsis thaliana]
Length = 249
Score = 49.3 bits (116), Expect = 7e-06
Identities = 22/34 (64%), Positives = 28/34 (81%)
Frame = +3
Query: 21 LVLEITPFPVGTLTESDYRKAERLEMVLRMSASL 122
LV+EITPFP G LTE+DY KAE+LE +LR A++
Sbjct: 216 LVVEITPFPAGPLTENDYLKAEKLERILRSGANI 249
>gb|AAK42360.1| (AE006824) Pterin-4-alpha-carbinolamine dehydratase, putative
[Sulfolobus solfataricus]
Length = 114
Score = 28.9 bits (63), Expect = 9.3
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 21 LVLEITPFPVGTLTESDYRKAERLEMVLRMSAS 119
+V+E+T VG LT+ DY+ A +L+ + +M S
Sbjct: 82 VVVELTTHDVGGLTDLDYKLAIKLDELYKMKTS 114
Database: nr
Posted date: Jul 23, 2001 8:52 PM
Number of letters in database: 228,742,487
Number of sequences in database: 722,277
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,932,609
Number of Sequences: 722277
Number of extensions: 2590627
Number of successful extensions: 5450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5449
length of database: 228,742,487
effective HSP length: 80
effective length of database: 170,960,327
effective search space used: 4103047848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)