Score E
Sequences producing significant alignments: (bits) Value
dbj|AU072945.1|AU072945 AU072945 Dictyostelium discoideum S... 29 0.99
gb|AW350036.1|AW350036 GM210006B20H3 Gm-r1021 Glycine max c... 30 1.1
gb|BF180012.1|BF180012 601806359F1 NCI_CGAP_Mam5 Mus muscul... 34 2.8
gb|AW344489.1|AW344489 24395 MARC 3BOV Bos taurus cDNA 5'. 34 3.9
gb|AW219147.1|AW219147 EST301629 tomato root during/after f... 34 3.9
gb|BF044005.1|BF044005 BP250014A20E3 Soares normalized bovi... 34 3.9
gb|BF044083.1|BF044083 BP250004A20E3 Soares normalized bovi... 34 3.9
dbj|AV086905.1|AV086905 AV086905 Mus musculus tongue C57BL/... 26 4.4
gb|BE038147.1|BE038147 AA09E05 AA Arabidopsis thaliana cDNA... 33 5.3
gb|BE909260.1|BE909260 601502907F1 NIH_MGC_70 Homo sapiens ... 26 6.4
dbj|AV434538.1|AV434538 AV434538 Porphyra yezoensis TU-1 Po... 33 7.3
dbj|BB476312.1|BB476312 BB476312 RIKEN full-length enriched... 33 7.3
gb|BF689501.1|BF689501 602186873F1 NIH_MGC_49 Homo sapiens ... 25 9.9
>dbj|AU072945.1|AU072945 AU072945 Dictyostelium discoideum SS (H.Urushihara) Dictyostelium
discoideum cDNA clone SSF513.
Length = 240
Score = 29.5 bits (58), Expect(2) = 0.99
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -2 / -2
Query: 111 NSSALLVSFCKFGCKMIVMWVCL 43
N +L +SFC F C + ++VCL
Sbjct: 236 NCFSLSISFCLFVCLFVCLFVCL 168
Score = 20.3 bits (38), Expect(2) = 0.99
Identities = 6/14 (42%), Positives = 9/14 (63%)
Frame = -3 / -3
Query: 56 CGFVCYLT*ICLKW 15
C FVC +C+K+
Sbjct: 133 CLFVCLFIVVCMKF 92
>gb|AW350036.1|AW350036 GM210006B20H3 Gm-r1021 Glycine max cDNA clone Gm-r1021-2286 3'.
Length = 646
Score = 30.4 bits (60), Expect(2) = 1.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2 / +1
Query: 177 F*SVHE*RGAKEAPI*IIGWYFNSSALLVSFCKF 76
F +E RG +E ++ W+FNS+++L F F
Sbjct: 487 FGGFNELRGIQETSDMVVDWFFNSNSILXXFNLF 588
Score = 20.8 bits (39), Expect(2) = 1.1
Identities = 9/22 (40%), Positives = 12/22 (53%)
Frame = -1 / +1
Query: 232 GRFKALPQC*WIP*LGSIILIC 167
GRF ++P+ WI I L C
Sbjct: 253 GRFNSIPKLLWINICFKIRLPC 318
>gb|BF180012.1|BF180012 601806359F1 NCI_CGAP_Mam5 Mus musculus cDNA clone IMAGE:4037006 5'.
Length = 1694
Score = 34.1 bits (68), Expect = 2.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -3
Query: 114 FNSSALLVSFCKFGCKMIVMWVCLLSY 34
F S+ + VS GC +V W CLLSY
Sbjct: 993 FGSAVVAVSSVVVGCAAVVDWCCLLSY 913
>gb|AW344489.1|AW344489 24395 MARC 3BOV Bos taurus cDNA 5'.
Length = 429
Score = 33.6 bits (67), Expect = 3.9
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = -2 / +2
Query: 156 RGAKEAPI*IIGWYFNSSALLVSFCKFGCKM 64
RGA + II WYF +S L S FGC+M
Sbjct: 20 RGAGACLVNIIYWYFAASHLTSSLSLFGCQM 112
>gb|AW219147.1|AW219147 EST301629 tomato root during/after fruit set, Cornell University
Lycopersicon esculentum cDNA clone cLEX2L24.
Length = 647
Score = 33.6 bits (67), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = +1 / +3
Query: 16 HFKQIHVR*QTNPHHNHFTTKLTKTNK*CRAIKIPTN 126
HF +I+ R* T HHNH + *CR + T+
Sbjct: 420 HFTKINTR*STLQHHNHRKQRNVLVRN*CRLVLTSTS 530
>gb|BF044005.1|BF044005 BP250014A20E3 Soares normalized bovine placenta Bos taurus cDNA
clone BP250014A20E3 5'.
Length = 520
Score = 33.6 bits (67), Expect = 3.9
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = -2 / +1
Query: 156 RGAKEAPI*IIGWYFNSSALLVSFCKFGCKM 64
RGA + II WYF +S L S FGC+M
Sbjct: 310 RGAGACLVNIIYWYFAASHLTSSLSLFGCQM 402
>gb|BF044083.1|BF044083 BP250004A20E3 Soares normalized bovine placenta Bos taurus cDNA
clone BP250004A20E3 5'.
Length = 526
Score = 33.6 bits (67), Expect = 3.9
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = -2 / +1
Query: 156 RGAKEAPI*IIGWYFNSSALLVSFCKFGCKM 64
RGA + II WYF +S L S FGC+M
Sbjct: 310 RGAGACLVNIIYWYFAASHLTSSLSLFGCQM 402
>dbj|AV086905.1|AV086905 AV086905 Mus musculus tongue C57BL/6J adult Mus musculus cDNA clone
2310024L15.
Length = 239
Score = 25.8 bits (50), Expect(2) = 4.4
Identities = 11/28 (39%), Positives = 14/28 (49%)
Frame = +1 / -3
Query: 10 KGHFKQIHVR*QTNPHHNHFTTKLTKTN 93
K H + HVR T+ H T LT T+
Sbjct: 174 KNHCSRAHVRAHTHAHKGTHTQTLTHTH 91
Score = 21.7 bits (41), Expect(2) = 4.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2 / -1
Query: 125 IIYMGASLAPLYSC 166
I+Y G S PL+ C
Sbjct: 62 ILYFGGSKNPLFCC 21
>gb|BE038147.1|BE038147 AA09E05 AA Arabidopsis thaliana cDNA 5' similar to nitrate
reductase 2.
Length = 736
Score = 33.1 bits (66), Expect = 5.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3 / -3
Query: 15 PF*TNSRKITDKPTSQSFYNQTYKN 89
P+ TN RKIT KPT+ N Y+N
Sbjct: 407 PYETNHRKITQKPTNNRV*NPKYRN 333
>gb|BE909260.1|BE909260 601502907F1 NIH_MGC_70 Homo sapiens cDNA clone IMAGE:3904704 5'.
Length = 1298
Score = 26.3 bits (51), Expect(2) = 6.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1 / +2
Query: 46 TNPHHNHFTTKLTKTN 93
T PHH+H T LT +N
Sbjct: 1130 TTPHHHHPTPTLTPSN 1177
Score = 24.0 bits (46), Expect(2) = 6.4
Identities = 13/31 (41%), Positives = 14/31 (44%)
Frame = +2 / +2
Query: 74 PNLQKLTSNAELLKYQPIIYMGASLAPLYSC 166
PNL TS+ L P S APL SC
Sbjct: 1193 PNLHAHTSHHSLAPPPPTPSSPPSFAPLASC 1285
>dbj|AV434538.1|AV434538 AV434538 Porphyra yezoensis TU-1 Porphyra yezoensis cDNA clone
PM044f03_r 5'.
Length = 357
Score = 32.7 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -3
Query: 162 HVQIKIIDPS*GIHQHCGRALNLPGRA 242
H+ +++ P G+ QHC + LPGRA
Sbjct: 292 HIHKRLLRPVGGLIQHCSSDIRLPGRA 212
>dbj|BB476312.1|BB476312 BB476312 RIKEN full-length enriched, 13 days embryo heart Mus
musculus cDNA clone D330017L08 3'.
Length = 211
Score = 32.7 bits (65), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2 / -3
Query: 141 API*IIGWYFNSSALLVSFCKFGCKMIVMWVCLLSYVNL 25
+P * WYFN + ++ K+ C + +VC+ Y+ L
Sbjct: 122 SPT*FGSWYFNITGIITLNKKYVCVCVCKYVCVCMYMYL 6
>gb|BF689501.1|BF689501 602186873F1 NIH_MGC_49 Homo sapiens cDNA clone IMAGE:4298779 5'.
Length = 968
Score = 24.9 bits (48), Expect(2) = 9.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2 / -3
Query: 99 LLVSFCKFGCKMIVMWVCLLSYV 31
L SFC+F C+ +W+ LS +
Sbjct: 903 LFHSFCRFPCRCRSIWLFGLSLI 835
Score = 23.5 bits (45), Expect(2) = 9.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -3 / -3
Query: 50 FVCYLT*ICLKWPFP 6
F+C L+ CL+ P P
Sbjct: 375 FICILSMACLRMPIP 331
Database: preblast_est
Posted date: Jul 23, 2001 7:25 PM
Number of letters in database: -464,519,920
Number of sequences in database: 8,545,239
Lambda K H
0.318 0.135 0.00
Matrix: BLOSUM62
Number of Hits to DB: 2,249,734,142
Number of Sequences: 8545239
Number of extensions: 22948148
Number of successful extensions: 2107800
Number of sequences better than 10.0: 16
length of database: 1,276,815,792
effective HSP length: 51
effective length of database: 841,008,603
effective search space used: 25230258090
frameshift window, decay const: 50, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)