The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S_9_F02_T7.seq Fgr-S_9_F02_T7 0 0 0 1 251
(247 letters)
Database: nr
722,277 sequences; 228,742,487 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA32798.1| (AB012391) Na+/K+-ATPase alpha-subunit [Dug... 30 6.0
pir||T05930 probable ribosomal protein L13 - barley (fragme... 29 7.8
>dbj|BAA32798.1| (AB012391) Na+/K+-ATPase alpha-subunit [Dugesia japonica]
Length = 1022
Score = 29.6 bits (65), Expect = 6.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 149 MLKAASGFCCYQVLVSEFLFWPSR 78
M++A+ GF Y V+++E FWPSR
Sbjct: 857 MIQASGGFFVYFVIMAEQGFWPSR 880
>pir||T05930 probable ribosomal protein L13 - barley (fragment)
emb|CAA10989.1| (AJ222784) ribosomal like-protein [Hordeum vulgare]
Length = 74
Score = 29.3 bits (64), Expect = 7.8
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -2
Query: 231 VERMNQRQLGARQ 193
VERMNQRQLGARQ
Sbjct: 50 VERMNQRQLGARQ 62
Database: nr
Posted date: Jul 23, 2001 8:52 PM
Number of letters in database: 228,742,487
Number of sequences in database: 722,277
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,120,750
Number of Sequences: 722277
Number of extensions: 1137867
Number of successful extensions: 2111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2111
length of database: 228,742,487
effective HSP length: 57
effective length of database: 187,572,698
effective search space used: 4501744752
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)